Wall clock time and date at job start Wed Apr 1 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47233 * 2 1 4 4 C 1.34778 * 119.99687 * 276.01509 * 3 2 1 5 5 O 1.21557 * 119.99552 * 184.26605 * 4 3 2 6 6 C 1.47859 * 120.00050 * 4.26610 * 4 3 2 7 7 C 1.39623 * 120.10865 * 301.28316 * 6 4 3 8 8 C 1.37977 * 119.99161 * 179.74360 * 7 6 4 9 9 C 1.38254 * 120.22504 * 0.51269 * 8 7 6 10 10 C 1.38943 * 120.22178 * 359.76287 * 9 8 7 11 11 N 1.39960 * 120.00340 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99806 * 333.01191 * 11 10 9 13 13 C 1.50696 * 119.99926 * 183.95900 * 12 11 10 14 14 O 1.21287 * 119.99970 * 3.96055 * 12 11 10 15 15 C 1.38642 * 120.00320 * 359.97438 * 10 9 8 16 16 C 1.50700 * 120.11081 * 180.02562 * 15 10 9 17 17 C 1.46504 * 120.00231 * 96.00818 * 3 2 1 18 18 C 1.53497 * 114.20439 * 120.00124 * 17 3 2 19 19 N 1.47064 * 87.98342 * 87.52142 * 18 17 3 20 20 C 1.36940 * 136.05840 * 207.08170 * 19 18 17 21 21 H 1.07998 * 119.99511 * 358.77395 * 20 19 18 22 22 C 1.38806 * 119.99986 * 178.76473 * 20 19 18 23 23 N 1.31619 * 119.99836 * 185.02398 * 22 20 19 24 24 Si 1.86803 * 120.00093 * 5.03096 * 22 20 19 25 25 H 1.48501 * 109.46648 * 174.03819 * 24 22 20 26 26 H 1.48502 * 109.46782 * 294.03609 * 24 22 20 27 27 H 1.48493 * 109.47200 * 54.03620 * 24 22 20 28 28 C 1.47066 * 87.88624 * 27.33948 * 19 18 17 29 29 H 1.09001 * 109.47165 * 299.99984 * 1 2 3 30 30 H 1.08991 * 109.47127 * 60.00144 * 1 2 3 31 31 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47442 * 239.99954 * 2 1 3 33 33 H 1.09008 * 109.47202 * 119.99906 * 2 1 3 34 34 H 1.07996 * 120.00076 * 0.02562 * 7 6 4 35 35 H 1.08000 * 119.88523 * 180.25115 * 8 7 6 36 36 H 1.07995 * 119.89143 * 179.74252 * 9 8 7 37 37 H 0.97003 * 120.00579 * 153.00651 * 11 10 9 38 38 H 1.08994 * 109.47619 * 89.99966 * 13 12 11 39 39 H 1.09004 * 109.46890 * 209.99923 * 13 12 11 40 40 H 1.09003 * 109.47266 * 329.99843 * 13 12 11 41 41 H 1.09002 * 109.47070 * 274.59213 * 16 15 10 42 42 H 1.08998 * 109.47067 * 34.59897 * 16 15 10 43 43 H 1.09003 * 109.46493 * 154.59569 * 16 15 10 44 44 H 1.08998 * 113.27866 * 346.94122 * 17 3 2 45 45 H 1.09005 * 113.46772 * 332.74486 * 18 17 3 46 46 H 1.08998 * 113.46585 * 202.30275 * 18 17 3 47 47 H 0.97001 * 120.00368 * 5.01711 * 23 22 20 48 48 H 1.09002 * 113.46615 * 87.43899 * 28 19 18 49 49 H 1.09000 * 113.46929 * 217.87642 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1277 2.0573 -1.1608 5 8 2.6053 3.1750 -1.1705 6 6 1.6666 1.4394 -2.4225 7 6 2.2157 0.2294 -2.8514 8 6 1.7799 -0.3477 -4.0265 9 6 0.8074 0.2733 -4.7880 10 6 0.2588 1.4804 -4.3727 11 7 -0.7251 2.1054 -5.1475 12 6 -0.7710 1.8932 -6.4777 13 6 -1.7729 2.6345 -7.3248 14 8 -0.0059 1.1057 -6.9929 15 6 0.6859 2.0659 -3.1908 16 6 0.0921 3.3748 -2.7378 17 6 2.3878 2.0276 1.2618 18 6 3.8508 2.4871 1.3287 19 7 3.4271 3.7533 0.7122 20 6 4.0119 4.7137 -0.0693 21 1 5.0509 4.6227 -0.3498 22 6 3.2694 5.8041 -0.5010 23 7 3.8015 6.6752 -1.3320 24 14 1.5150 6.0354 0.0974 25 1 0.9938 7.3381 -0.3890 26 1 0.6648 4.9357 -0.4253 27 1 1.4918 6.0161 1.5820 28 6 2.1007 3.5373 1.3097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 2.9782 -0.2569 -2.2612 35 1 2.2029 -1.2857 -4.3545 36 1 0.4732 -0.1811 -5.7089 37 1 -1.3741 2.6912 -4.7272 38 1 -1.3336 3.5691 -7.6731 39 1 -2.0484 2.0207 -8.1824 40 1 -2.6617 2.8497 -6.7316 41 1 0.6273 4.1991 -3.2092 42 1 -0.9594 3.4144 -3.0220 43 1 0.1791 3.4575 -1.6544 44 1 2.0508 1.4793 2.1415 45 1 4.5195 1.9001 0.6990 46 1 4.2232 2.6031 2.3466 47 1 4.6852 6.5176 -1.6996 48 1 2.0117 3.9303 2.3225 49 1 1.2784 3.8451 0.6638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957134417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:21 Heat of formation + Delta-G solvation = 79.771851 kcal Electronic energy + Delta-G solvation = -32565.313142 eV Core-core repulsion = 28497.237008 eV Total energy + Delta-G solvation = -4068.076134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.88949 -40.10990 -38.50373 -36.54066 -35.33211 -34.75287 -32.36429 -32.03810 -31.06098 -29.90140 -28.97978 -27.41897 -26.74143 -25.22803 -24.29214 -22.89908 -22.73975 -21.46439 -20.84680 -19.78020 -18.48320 -17.62942 -17.21542 -17.06931 -16.06059 -15.94839 -15.75242 -15.55468 -14.96932 -14.61455 -14.35772 -14.02872 -13.91461 -13.60819 -13.51436 -13.41167 -13.20792 -13.09349 -12.94646 -12.89303 -12.61413 -12.47754 -12.17844 -11.93311 -11.66701 -11.58816 -11.49943 -11.18032 -11.04085 -10.92272 -10.77968 -10.50066 -10.28534 -10.14488 -9.86789 -9.09602 -9.04809 -8.74738 -8.55202 -8.23528 -8.03750 -7.90375 -6.60041 -5.94602 -2.78457 1.25093 1.35896 2.40718 2.88022 3.37741 3.41834 3.51829 3.63818 3.81834 3.94588 4.46212 4.76004 4.86096 4.88637 4.94433 4.99541 5.05738 5.08759 5.10755 5.15249 5.21276 5.40922 5.43527 5.50139 5.54851 5.58611 5.65300 5.74128 5.75871 5.86660 5.91367 5.95461 5.96694 6.13854 6.23945 6.26422 6.30456 6.37771 6.39826 6.46738 6.52373 6.54936 6.62614 6.66767 7.05879 7.24409 7.32513 7.38654 7.90891 8.00557 8.54425 9.08960 9.32174 9.90134 10.71175 11.59296 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.004658 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.931523 B = 6009.944206 C = 7338.043336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.598 5.598 4 C 0.511 3.489 5 O -0.399 6.399 6 C -0.085 4.085 7 C -0.110 4.110 8 C -0.113 4.113 9 C -0.121 4.121 10 C 0.135 3.865 11 N -0.667 5.667 12 C 0.510 3.490 13 C -0.171 4.171 14 O -0.529 6.529 15 C -0.068 4.068 16 C -0.117 4.117 17 C 0.105 3.895 18 C 0.105 3.895 19 N -0.597 5.597 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.020 4.020 23 N -0.954 5.954 24 Si 1.077 2.923 25 H -0.308 1.308 26 H -0.289 1.289 27 H -0.301 1.301 28 C 0.085 3.915 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.411 0.589 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.254 0.746 48 H 0.043 0.957 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 -16.292 -3.256 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.335 5.335 4 C 0.295 3.705 5 O -0.264 6.264 6 C -0.089 4.089 7 C -0.129 4.129 8 C -0.132 4.132 9 C -0.141 4.141 10 C 0.041 3.959 11 N -0.312 5.312 12 C 0.299 3.701 13 C -0.231 4.231 14 O -0.405 6.405 15 C -0.071 4.071 16 C -0.174 4.174 17 C 0.000 4.000 18 C -0.023 4.023 19 N -0.324 5.324 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.216 4.216 23 N -0.600 5.600 24 Si 0.914 3.086 25 H -0.236 1.236 26 H -0.219 1.219 27 H -0.229 1.229 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.248 0.752 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.295 -14.915 -3.931 21.030 hybrid contribution 1.059 -0.917 0.348 1.444 sum -13.236 -15.833 -3.583 20.945 Atomic orbital electron populations 1.22204 0.96559 1.01499 1.02457 1.21640 0.94152 0.83344 1.02887 1.47458 1.67193 1.13201 1.05647 1.18634 0.81237 0.87759 0.82858 1.91566 1.35543 1.15242 1.84040 1.19912 0.97146 0.95095 0.96796 1.21178 1.00130 0.94580 0.97029 1.20925 0.97656 1.00171 0.94441 1.21557 0.97976 0.93449 1.01094 1.17467 0.93283 0.93095 0.92074 1.43634 1.31727 1.48185 1.07639 1.20984 0.84871 0.82443 0.81811 1.21896 0.98320 1.02351 1.00523 1.90662 1.41971 1.35331 1.72547 1.19580 0.96827 0.96503 0.94158 1.20885 0.98640 0.94092 1.03754 1.22678 0.97832 0.94453 0.85052 1.22756 0.94185 0.89059 0.96316 1.45708 1.07840 1.23334 1.55563 1.19796 0.94998 0.99456 1.22879 0.91083 1.25274 1.04071 0.93564 0.98649 1.70899 1.18438 1.37421 1.33197 0.83687 0.76921 0.73413 0.74570 1.23625 1.21893 1.22895 1.23090 0.92460 0.91743 0.96918 0.92488 0.92482 0.92190 0.90219 0.90787 0.85673 0.85650 0.83339 0.75207 0.88271 0.88522 0.89919 0.89855 0.92740 0.90097 0.89213 0.94134 0.94230 0.93666 0.93946 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.13 37.16 0.38 -1.43 16 2 C 0.10 1.21 5.89 -4.04 -0.02 1.19 16 3 N -0.60 -9.81 2.76 -166.83 -0.46 -10.27 16 4 C 0.51 10.07 5.39 -12.32 -0.07 10.01 16 5 O -0.40 -9.98 8.51 5.32 0.05 -9.93 16 6 C -0.09 -1.46 4.22 -104.99 -0.44 -1.90 16 7 C -0.11 -1.58 7.79 -39.16 -0.31 -1.89 16 8 C -0.11 -1.49 10.02 -39.67 -0.40 -1.89 16 9 C -0.12 -1.72 8.77 -39.31 -0.34 -2.07 16 10 C 0.13 1.96 6.41 -83.74 -0.54 1.42 16 11 N -0.67 -7.63 5.14 -9.89 -0.05 -7.68 16 12 C 0.51 5.82 7.82 -10.99 -0.09 5.73 16 13 C -0.17 -1.13 10.30 36.00 0.37 -0.76 16 14 O -0.53 -8.03 14.08 5.55 0.08 -7.95 16 15 C -0.07 -1.10 5.93 -104.02 -0.62 -1.72 16 16 C -0.12 -1.94 9.00 36.01 0.32 -1.62 16 17 C 0.11 1.81 4.86 -67.68 -0.33 1.48 16 18 C 0.11 2.12 8.22 -8.51 -0.07 2.05 16 19 N -0.60 -15.11 2.06 -184.63 -0.38 -15.49 16 20 C -0.25 -7.40 8.99 -15.06 -0.14 -7.53 16 21 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 22 C -0.02 -0.61 5.02 -17.43 -0.09 -0.70 16 23 N -0.95 -31.89 13.70 55.49 0.76 -31.13 16 24 Si 1.08 28.63 24.29 -169.99 -4.13 24.50 16 25 H -0.31 -8.40 7.11 56.52 0.40 -7.99 16 26 H -0.29 -7.06 4.54 56.52 0.26 -6.80 16 27 H -0.30 -7.62 6.72 56.52 0.38 -7.24 16 28 C 0.08 1.83 4.85 -8.37 -0.04 1.79 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.89 4.46 -51.93 -0.23 0.66 16 33 H 0.07 0.72 8.00 -51.92 -0.42 0.30 16 34 H 0.13 1.61 6.99 -52.49 -0.37 1.25 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.15 2.15 5.61 -52.49 -0.29 1.85 16 37 H 0.41 3.55 7.05 -40.82 -0.29 3.26 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.05 0.66 6.62 -51.93 -0.34 0.32 16 43 H 0.08 1.55 5.12 -51.93 -0.27 1.28 16 44 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.25 8.51 8.73 -40.82 -0.36 8.15 16 48 H 0.04 0.89 7.95 -51.93 -0.41 0.47 16 49 H 0.06 1.40 3.67 -51.93 -0.19 1.21 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -39.05 373.45 -8.08 -47.13 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.16 Total: 3.02 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.41 Total: 2.17 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.13 Total: -64.57 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.12 Total: -17.88 kcal Atomic # 14 Polarization: 28.63 SS G_CDS: -4.13 Total: 24.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.05 -8.08 -47.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957134417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.906 kcal (2) G-P(sol) polarization free energy of solvation -39.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds