Wall clock time and date at job start Wed Apr 1 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47233 * 2 1 4 4 C 1.34778 * 119.99687 * 276.01509 * 3 2 1 5 5 O 1.21557 * 119.99552 * 184.26605 * 4 3 2 6 6 C 1.47859 * 120.00050 * 4.26610 * 4 3 2 7 7 C 1.39623 * 120.10865 * 301.28316 * 6 4 3 8 8 C 1.37977 * 119.99161 * 179.74360 * 7 6 4 9 9 C 1.38254 * 120.22504 * 0.51269 * 8 7 6 10 10 C 1.38943 * 120.22178 * 359.76287 * 9 8 7 11 11 N 1.39960 * 120.00340 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99806 * 333.01191 * 11 10 9 13 13 C 1.50696 * 119.99926 * 183.95900 * 12 11 10 14 14 O 1.21287 * 119.99970 * 3.96055 * 12 11 10 15 15 C 1.38642 * 120.00320 * 359.97438 * 10 9 8 16 16 C 1.50700 * 120.11081 * 180.02562 * 15 10 9 17 17 C 1.46504 * 120.00231 * 96.00818 * 3 2 1 18 18 C 1.53497 * 114.20439 * 120.00124 * 17 3 2 19 19 N 1.47064 * 87.98342 * 87.52142 * 18 17 3 20 20 C 1.36940 * 136.05840 * 207.08170 * 19 18 17 21 21 H 1.07998 * 119.99511 * 358.77395 * 20 19 18 22 22 C 1.38806 * 119.99986 * 178.76473 * 20 19 18 23 23 N 1.31619 * 119.99836 * 185.02398 * 22 20 19 24 24 Si 1.86803 * 120.00093 * 5.03096 * 22 20 19 25 25 H 1.48501 * 109.46648 * 174.03819 * 24 22 20 26 26 H 1.48502 * 109.46782 * 294.03609 * 24 22 20 27 27 H 1.48493 * 109.47200 * 54.03620 * 24 22 20 28 28 C 1.47066 * 87.88624 * 27.33948 * 19 18 17 29 29 H 1.09001 * 109.47165 * 299.99984 * 1 2 3 30 30 H 1.08991 * 109.47127 * 60.00144 * 1 2 3 31 31 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47442 * 239.99954 * 2 1 3 33 33 H 1.09008 * 109.47202 * 119.99906 * 2 1 3 34 34 H 1.07996 * 120.00076 * 0.02562 * 7 6 4 35 35 H 1.08000 * 119.88523 * 180.25115 * 8 7 6 36 36 H 1.07995 * 119.89143 * 179.74252 * 9 8 7 37 37 H 0.97003 * 120.00579 * 153.00651 * 11 10 9 38 38 H 1.08994 * 109.47619 * 89.99966 * 13 12 11 39 39 H 1.09004 * 109.46890 * 209.99923 * 13 12 11 40 40 H 1.09003 * 109.47266 * 329.99843 * 13 12 11 41 41 H 1.09002 * 109.47070 * 274.59213 * 16 15 10 42 42 H 1.08998 * 109.47067 * 34.59897 * 16 15 10 43 43 H 1.09003 * 109.46493 * 154.59569 * 16 15 10 44 44 H 1.08998 * 113.27866 * 346.94122 * 17 3 2 45 45 H 1.09005 * 113.46772 * 332.74486 * 18 17 3 46 46 H 1.08998 * 113.46585 * 202.30275 * 18 17 3 47 47 H 0.97001 * 120.00368 * 5.01711 * 23 22 20 48 48 H 1.09002 * 113.46615 * 87.43899 * 28 19 18 49 49 H 1.09000 * 113.46929 * 217.87642 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1277 2.0573 -1.1608 5 8 2.6053 3.1750 -1.1705 6 6 1.6666 1.4394 -2.4225 7 6 2.2157 0.2294 -2.8514 8 6 1.7799 -0.3477 -4.0265 9 6 0.8074 0.2733 -4.7880 10 6 0.2588 1.4804 -4.3727 11 7 -0.7251 2.1054 -5.1475 12 6 -0.7710 1.8932 -6.4777 13 6 -1.7729 2.6345 -7.3248 14 8 -0.0059 1.1057 -6.9929 15 6 0.6859 2.0659 -3.1908 16 6 0.0921 3.3748 -2.7378 17 6 2.3878 2.0276 1.2618 18 6 3.8508 2.4871 1.3287 19 7 3.4271 3.7533 0.7122 20 6 4.0119 4.7137 -0.0693 21 1 5.0509 4.6227 -0.3498 22 6 3.2694 5.8041 -0.5010 23 7 3.8015 6.6752 -1.3320 24 14 1.5150 6.0354 0.0974 25 1 0.9938 7.3381 -0.3890 26 1 0.6648 4.9357 -0.4253 27 1 1.4918 6.0161 1.5820 28 6 2.1007 3.5373 1.3097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 2.9782 -0.2569 -2.2612 35 1 2.2029 -1.2857 -4.3545 36 1 0.4732 -0.1811 -5.7089 37 1 -1.3741 2.6912 -4.7272 38 1 -1.3336 3.5691 -7.6731 39 1 -2.0484 2.0207 -8.1824 40 1 -2.6617 2.8497 -6.7316 41 1 0.6273 4.1991 -3.2092 42 1 -0.9594 3.4144 -3.0220 43 1 0.1791 3.4575 -1.6544 44 1 2.0508 1.4793 2.1415 45 1 4.5195 1.9001 0.6990 46 1 4.2232 2.6031 2.3466 47 1 4.6852 6.5176 -1.6996 48 1 2.0117 3.9303 2.3225 49 1 1.2784 3.8451 0.6638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957134417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:20 Heat of formation + Delta-G solvation = 51.242143 kcal Electronic energy + Delta-G solvation = -32566.550283 eV Core-core repulsion = 28497.237008 eV Total energy + Delta-G solvation = -4069.313275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07672 -41.38852 -39.73649 -38.05551 -36.62702 -35.84184 -34.25760 -33.55398 -31.97951 -31.14421 -29.97635 -29.16932 -27.95458 -26.90439 -25.65952 -24.34864 -23.78564 -22.82253 -21.96017 -21.28483 -19.88002 -19.28548 -18.71565 -18.16161 -17.41062 -17.19015 -16.90501 -16.77292 -16.37768 -16.03102 -15.77617 -15.57474 -15.14248 -15.08292 -14.94753 -14.72435 -14.53792 -14.40422 -14.20448 -13.81632 -13.43614 -13.36840 -13.29567 -13.16415 -13.06496 -12.98170 -12.78643 -12.57035 -12.52980 -12.31129 -12.16894 -12.05497 -11.81401 -11.53591 -11.09923 -10.99598 -10.93997 -10.73159 -10.15209 -9.72219 -9.37332 -9.09187 -8.63784 -8.38944 -5.10120 0.09422 0.21284 1.35140 1.49805 1.50518 1.66738 1.89866 2.13990 2.20019 2.71296 2.75151 3.21322 3.47984 3.58163 3.69218 3.71691 3.78278 3.95509 4.08227 4.19961 4.32480 4.38970 4.43356 4.48147 4.50074 4.54646 4.58751 4.60536 4.63855 4.64841 4.71100 4.75612 4.79917 4.84383 4.95372 5.05682 5.07367 5.13958 5.15667 5.19966 5.31125 5.38906 5.43145 5.43948 5.45462 5.94830 5.99474 6.16833 6.36788 6.66515 6.92310 7.02991 7.61955 7.69312 8.54199 9.18737 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.004658 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.931523 B = 6009.944206 C = 7338.043336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.594 5.594 4 C 0.511 3.489 5 O -0.468 6.468 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.102 4.102 9 C -0.128 4.128 10 C 0.135 3.865 11 N -0.661 5.661 12 C 0.504 3.496 13 C -0.163 4.163 14 O -0.570 6.570 15 C -0.086 4.086 16 C -0.108 4.108 17 C 0.133 3.867 18 C 0.102 3.898 19 N -0.629 5.629 20 C -0.213 4.213 21 H 0.024 0.976 22 C -0.083 4.083 23 N -0.997 5.997 24 Si 1.120 2.880 25 H -0.324 1.324 26 H -0.265 1.265 27 H -0.278 1.278 28 C 0.075 3.925 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.424 0.576 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.151 0.849 45 H 0.027 0.973 46 H 0.067 0.933 47 H 0.231 0.769 48 H 0.061 0.939 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 -19.875 -1.984 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.329 5.329 4 C 0.296 3.704 5 O -0.339 6.339 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.120 4.120 9 C -0.148 4.148 10 C 0.040 3.960 11 N -0.308 5.308 12 C 0.296 3.704 13 C -0.222 4.222 14 O -0.450 6.450 15 C -0.090 4.090 16 C -0.164 4.164 17 C 0.028 3.972 18 C -0.025 4.025 19 N -0.356 5.356 20 C -0.341 4.341 21 H 0.041 0.959 22 C -0.271 4.271 23 N -0.647 5.647 24 Si 0.951 3.049 25 H -0.255 1.255 26 H -0.192 1.192 27 H -0.205 1.205 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.263 0.737 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.168 0.832 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.266 -18.607 -2.590 25.516 hybrid contribution 2.039 -0.017 -0.071 2.040 sum -15.227 -18.624 -2.662 24.204 Atomic orbital electron populations 1.22139 0.95451 1.02960 1.01516 1.21985 0.94985 0.80582 1.04835 1.47626 1.65979 1.14823 1.04521 1.19056 0.79929 0.87005 0.84393 1.91514 1.38864 1.18136 1.85340 1.19873 0.98202 0.96410 0.96310 1.21314 1.00183 0.93777 0.97684 1.21254 0.96526 1.00885 0.93322 1.21733 0.98390 0.93507 1.01194 1.17559 0.93649 0.93159 0.91599 1.43710 1.31251 1.48004 1.07787 1.21918 0.84942 0.81868 0.81703 1.21947 0.97979 1.01959 1.00277 1.90637 1.43844 1.37349 1.73144 1.19582 0.97685 0.96494 0.95190 1.20729 1.00809 0.93415 1.01482 1.22541 0.94803 0.92650 0.87225 1.23038 0.96323 0.86575 0.96590 1.45664 1.10200 1.23866 1.55881 1.19465 0.92795 0.99959 1.21844 0.95851 1.26487 1.07473 0.94084 0.99045 1.71027 1.17811 1.39559 1.36307 0.83178 0.73282 0.73081 0.75351 1.25451 1.19209 1.20475 1.23316 0.89833 0.95170 0.96716 0.92314 0.94561 0.89486 0.89654 0.87477 0.84159 0.82472 0.83331 0.73676 0.87394 0.87658 0.86824 0.93263 0.88706 0.92854 0.83184 0.95501 0.91595 0.95995 0.92115 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.13 71.98 0.73 -2.08 16 2 C 0.10 1.87 5.89 86.38 0.51 2.38 16 3 N -0.59 -17.92 2.76 -800.01 -2.21 -20.13 16 4 C 0.51 19.96 5.39 86.79 0.47 20.43 16 5 O -0.47 -24.15 8.51 -3.89 -0.03 -24.18 16 6 C -0.10 -3.49 4.22 -20.10 -0.08 -3.58 16 7 C -0.11 -2.99 7.79 22.54 0.18 -2.82 16 8 C -0.10 -2.44 10.02 22.21 0.22 -2.22 16 9 C -0.13 -3.47 8.77 22.44 0.20 -3.28 16 10 C 0.14 3.81 6.41 38.11 0.24 4.05 16 11 N -0.66 -14.24 5.14 -303.59 -1.56 -15.80 16 12 C 0.50 10.79 7.82 87.65 0.69 11.48 16 13 C -0.16 -1.72 10.30 71.23 0.73 -0.99 16 14 O -0.57 -16.91 14.08 -3.05 -0.04 -16.96 16 15 C -0.09 -2.80 5.93 -19.48 -0.12 -2.92 16 16 C -0.11 -3.63 9.00 71.24 0.64 -2.99 16 17 C 0.13 4.08 4.86 45.55 0.22 4.30 16 18 C 0.10 3.91 8.22 83.18 0.68 4.59 16 19 N -0.63 -31.91 2.06 -738.04 -1.52 -33.44 16 20 C -0.21 -13.48 8.99 84.03 0.76 -12.73 16 21 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 22 C -0.08 -5.41 5.02 84.86 0.43 -4.98 16 23 N -1.00 -71.06 13.70 21.65 0.30 -70.76 16 24 Si 1.12 59.97 24.29 68.60 1.67 61.63 16 25 H -0.32 -18.01 7.11 99.48 0.71 -17.31 16 26 H -0.26 -12.92 4.54 99.48 0.45 -12.46 16 27 H -0.28 -13.57 6.72 99.48 0.67 -12.90 16 28 C 0.08 3.09 4.85 83.26 0.40 3.49 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.79 7.39 -2.39 -0.02 0.77 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.58 4.46 -2.39 -0.01 1.57 16 33 H 0.11 1.42 8.00 -2.38 -0.02 1.40 16 34 H 0.14 3.28 6.99 -2.91 -0.02 3.26 16 35 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.15 4.11 5.61 -2.91 -0.02 4.09 16 37 H 0.42 6.50 7.05 -92.71 -0.65 5.85 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.09 2.23 6.62 -2.39 -0.02 2.21 16 43 H 0.05 2.07 5.12 -2.39 -0.01 2.06 16 44 H 0.15 2.97 8.07 -2.39 -0.02 2.95 16 45 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.23 16.85 8.73 -92.71 -0.81 16.04 16 48 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16 49 H 0.04 1.98 3.67 -2.39 -0.01 1.97 16 Total: -1.00 -95.13 373.45 3.49 -91.63 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.00 Total: 15.85 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.90 Total: 12.15 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -4.99 Total: -140.12 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.08 Total: -41.14 kcal Atomic # 14 Polarization: 59.97 SS G_CDS: 1.67 Total: 61.63 kcal Total: -95.13 3.49 -91.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957134417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.876 kcal (2) G-P(sol) polarization free energy of solvation -95.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds