Wall clock time and date at job start Wed Apr 1 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47283 * 2 1 4 4 C 1.34773 * 120.00070 * 99.24044 * 3 2 1 5 5 O 1.21549 * 120.00129 * 186.67984 * 4 3 2 6 6 C 1.47862 * 119.99965 * 6.68200 * 4 3 2 7 7 C 1.39711 * 120.07257 * 328.88487 * 6 4 3 8 8 C 1.38058 * 120.14295 * 180.02562 * 7 6 4 9 9 C 1.38095 * 120.29650 * 359.97438 * 8 7 6 10 10 C 1.39663 * 120.14907 * 359.97438 * 9 8 7 11 11 C 1.47861 * 120.07505 * 179.97438 * 10 9 8 12 12 O 1.21549 * 119.99532 * 201.96628 * 11 10 9 13 13 N 1.34771 * 119.99969 * 21.97122 * 11 10 9 14 14 C 1.46502 * 119.99875 * 185.06903 * 13 11 10 15 15 C 1.46501 * 119.99835 * 5.05936 * 13 11 10 16 16 C 1.39294 * 120.07402 * 149.12330 * 6 4 3 17 17 C 1.46500 * 119.99760 * 279.24798 * 3 2 1 18 18 C 1.53950 * 113.73913 * 222.66088 * 17 3 2 19 19 N 1.47813 * 86.03786 * 222.08345 * 18 17 3 20 20 C 1.36928 * 134.45706 * 204.64273 * 19 18 17 21 21 H 1.08002 * 120.00017 * 184.79710 * 20 19 18 22 22 C 1.38813 * 120.00283 * 4.79497 * 20 19 18 23 23 N 1.31619 * 119.99604 * 5.10648 * 22 20 19 24 24 Si 1.86800 * 120.00193 * 185.10500 * 22 20 19 25 25 H 1.48491 * 109.47323 * 95.00062 * 24 22 20 26 26 H 1.48508 * 109.46816 * 214.99830 * 24 22 20 27 27 H 1.48500 * 109.47231 * 334.99256 * 24 22 20 28 28 C 1.47586 * 91.04815 * 24.54990 * 19 18 17 29 29 H 1.09001 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47418 * 299.99826 * 1 2 3 31 31 H 1.08996 * 109.47039 * 60.00403 * 1 2 3 32 32 H 1.09002 * 109.46947 * 239.99574 * 2 1 3 33 33 H 1.09005 * 109.47210 * 120.00145 * 2 1 3 34 34 H 1.07999 * 119.92408 * 359.97438 * 7 6 4 35 35 H 1.07995 * 119.84700 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.92167 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46889 * 179.97438 * 14 13 11 38 38 H 1.08994 * 109.47257 * 59.99601 * 14 13 11 39 39 H 1.08999 * 109.46860 * 299.99480 * 14 13 11 40 40 H 1.09003 * 109.47398 * 264.25519 * 15 13 11 41 41 H 1.08997 * 109.47340 * 24.26103 * 15 13 11 42 42 H 1.09002 * 109.46803 * 144.25956 * 15 13 11 43 43 H 1.07998 * 120.14614 * 359.97438 * 16 6 4 44 44 H 1.08991 * 112.94589 * 354.24843 * 17 3 2 45 45 H 1.09002 * 113.76671 * 336.34691 * 18 17 3 46 46 H 1.08994 * 113.76873 * 107.74396 * 18 17 3 47 47 H 0.96997 * 120.00010 * 179.97438 * 23 22 20 48 48 H 1.08999 * 113.76428 * 221.14967 * 28 19 18 49 49 H 1.08996 * 113.77032 * 89.75983 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4197 1.9540 1.1520 5 8 2.7094 3.1342 1.1752 6 6 2.5076 1.1468 2.3877 7 6 1.6359 0.0731 2.5861 8 6 1.7164 -0.6812 3.7395 9 6 2.6579 -0.3810 4.7040 10 6 3.5362 0.6889 4.5180 11 6 4.5433 1.0093 5.5520 12 8 5.0247 2.1241 5.6067 13 7 4.9277 0.0652 6.4337 14 6 5.8407 0.4113 7.5259 15 6 4.4322 -1.3070 6.3001 16 6 3.4564 1.4581 3.3588 17 6 2.0703 2.1397 -1.2523 18 6 3.3586 2.9648 -1.4241 19 7 2.4805 4.0391 -1.9337 20 6 2.6618 5.1132 -2.7634 21 1 1.8552 5.8130 -2.9250 22 6 3.8823 5.3028 -3.3968 23 7 4.8315 4.3984 -3.2805 24 14 4.1776 6.8413 -4.4143 25 1 4.8541 7.8653 -3.5784 26 1 5.0362 6.5071 -5.5791 27 1 2.8774 7.3743 -4.8946 28 6 1.3301 3.4881 -1.1913 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.8970 -0.1666 1.8358 35 1 1.0404 -1.5104 3.8877 36 1 2.7158 -0.9754 5.6039 37 1 6.0354 -0.4742 8.1310 38 1 5.3875 1.1834 8.1475 39 1 6.7783 0.7822 7.1118 40 1 3.5643 -1.4444 6.9451 41 1 4.1478 -1.4913 5.2641 42 1 5.2159 -2.0062 6.5916 43 1 4.1304 2.2891 3.2119 44 1 1.8150 1.5380 -2.1244 45 1 3.8521 3.2098 -0.4836 46 1 4.0416 2.5622 -2.1721 47 1 5.6843 4.5306 -3.7235 48 1 0.3966 3.5028 -1.7538 49 1 1.2265 3.8872 -0.1823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957286396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:37 Heat of formation + Delta-G solvation = 87.635270 kcal Electronic energy + Delta-G solvation = -30717.288804 eV Core-core repulsion = 26649.553653 eV Total energy + Delta-G solvation = -4067.735151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02274 -40.12677 -38.32584 -36.70147 -36.03143 -35.69582 -32.31403 -31.56073 -31.34674 -30.24405 -28.48117 -27.29214 -26.86073 -24.62156 -24.43657 -23.65933 -23.06932 -22.44486 -20.59931 -20.04350 -18.67501 -17.45127 -17.10229 -16.66721 -16.63493 -16.20844 -16.05948 -15.44517 -15.16820 -14.61783 -14.58288 -14.50844 -14.18852 -13.86999 -13.67087 -13.49185 -13.45090 -13.23400 -12.92815 -12.89843 -12.64013 -12.42695 -12.27815 -12.17462 -11.67965 -11.49451 -11.42520 -11.35295 -11.19045 -11.02460 -10.78027 -10.54285 -10.16798 -10.05259 -9.88124 -9.47030 -9.35181 -9.25065 -9.04117 -8.96119 -8.58661 -8.08681 -6.68604 -5.63499 -2.95599 0.50249 0.93574 2.44690 2.61100 3.07408 3.22182 3.47700 3.52944 3.54174 3.69497 4.13906 4.36469 4.50758 4.58200 4.63014 4.71536 4.81174 4.86295 4.88108 5.02348 5.08974 5.15303 5.18100 5.24909 5.29072 5.36366 5.40446 5.47789 5.59865 5.62455 5.67546 5.70780 5.75927 5.88328 5.97144 5.98086 6.08584 6.11021 6.16550 6.41998 6.52595 6.67819 6.68297 6.95536 7.00855 7.41471 7.65247 7.67702 7.78920 7.87414 8.11195 8.54571 9.16629 9.83379 10.74568 11.52430 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002745 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.094866 B =10199.513662 C =11757.278605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 N -0.594 5.594 4 C 0.548 3.452 5 O -0.502 6.502 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.139 4.139 9 C -0.095 4.095 10 C -0.145 4.145 11 C 0.558 3.442 12 O -0.524 6.524 13 N -0.621 5.621 14 C 0.090 3.910 15 C 0.061 3.939 16 C -0.005 4.005 17 C 0.092 3.908 18 C 0.148 3.852 19 N -0.603 5.603 20 C -0.214 4.214 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.145 0.855 44 H 0.105 0.895 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -21.847 19.684 30.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.051 4.051 3 N -0.327 5.327 4 C 0.335 3.665 5 O -0.377 6.377 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.157 4.157 9 C -0.113 4.113 10 C -0.148 4.148 11 C 0.347 3.653 12 O -0.401 6.401 13 N -0.355 5.355 14 C -0.052 4.052 15 C -0.082 4.082 16 C -0.025 4.025 17 C -0.011 4.011 18 C 0.022 3.978 19 N -0.329 5.329 20 C -0.342 4.342 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.723 -20.378 19.475 28.763 hybrid contribution 0.189 0.689 -0.433 0.835 sum -5.534 -19.689 19.042 27.945 Atomic orbital electron populations 1.22307 0.95971 1.02198 1.03238 1.22355 0.94368 0.84083 1.04281 1.48015 1.63396 1.13342 1.07988 1.18169 0.78329 0.87159 0.82818 1.90890 1.47313 1.14888 1.84561 1.20113 0.98851 0.97734 0.96359 1.22593 0.98308 0.92721 0.97543 1.21102 0.99310 1.01237 0.94020 1.22320 0.93579 0.95213 1.00157 1.19736 0.99619 0.99085 0.96376 1.18355 0.81598 0.84366 0.80940 1.90827 1.55509 1.21665 1.72071 1.47590 1.48424 1.09950 1.29525 1.21639 0.93548 1.01230 0.88792 1.22555 0.99817 0.82298 1.03487 1.21353 0.95200 0.96132 0.89789 1.24099 1.02167 0.91297 0.83537 1.22813 0.91772 0.85489 0.97705 1.45609 1.05873 1.30500 1.50922 1.18990 0.97972 1.00155 1.17123 0.90396 1.24770 0.96420 0.98717 1.00748 1.69826 1.05215 1.34095 1.47506 0.86099 0.77659 0.82657 0.79365 1.21713 1.21780 1.20626 1.22963 0.91922 0.90417 0.96191 0.91395 0.92012 0.91225 0.90428 0.88281 0.82094 0.84801 0.83245 0.90564 0.91954 0.91787 0.91887 0.88872 0.91104 0.83710 0.87725 0.93326 0.90659 0.93818 0.94635 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.15 37.16 0.34 -1.21 16 2 C 0.07 0.77 5.58 -4.04 -0.02 0.74 16 3 N -0.59 -9.52 2.74 -169.00 -0.46 -9.98 16 4 C 0.55 9.83 6.86 -12.32 -0.08 9.74 16 5 O -0.50 -11.53 12.46 5.32 0.07 -11.47 16 6 C -0.13 -1.79 5.56 -105.02 -0.58 -2.37 16 7 C -0.09 -0.92 7.46 -39.10 -0.29 -1.21 16 8 C -0.14 -1.02 10.02 -39.70 -0.40 -1.42 16 9 C -0.09 -0.76 7.56 -39.10 -0.30 -1.05 16 10 C -0.15 -1.73 5.56 -105.02 -0.58 -2.32 16 11 C 0.56 7.26 7.52 -12.32 -0.09 7.16 16 12 O -0.52 -9.09 16.55 5.32 0.09 -9.00 16 13 N -0.62 -5.53 3.27 -190.64 -0.62 -6.15 16 14 C 0.09 0.66 10.17 59.85 0.61 1.27 16 15 C 0.06 0.28 8.61 59.85 0.52 0.80 16 16 C -0.01 -0.08 9.13 -38.78 -0.35 -0.43 16 17 C 0.09 1.83 4.58 -70.13 -0.32 1.51 16 18 C 0.15 3.82 6.99 -2.84 -0.02 3.80 16 19 N -0.60 -16.81 3.70 -177.86 -0.66 -17.47 16 20 C -0.21 -6.44 10.69 -15.06 -0.16 -6.60 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.67 11.29 55.49 0.63 -28.05 16 24 Si 0.91 23.36 29.56 -169.99 -5.02 18.33 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 28 C 0.11 2.56 8.27 -2.96 -0.02 2.53 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.55 7.04 -51.93 -0.37 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.10 0.89 4.02 -51.97 -0.21 0.68 16 34 H 0.16 1.31 2.69 -52.49 -0.14 1.17 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.72 4.15 -52.49 -0.22 0.51 16 37 H 0.08 0.30 7.87 -51.93 -0.41 -0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.18 7.19 -51.93 -0.37 -0.20 16 41 H 0.09 0.44 4.96 -51.93 -0.26 0.18 16 42 H 0.07 0.21 8.04 -51.93 -0.42 -0.21 16 43 H 0.15 2.52 7.68 -52.49 -0.40 2.12 16 44 H 0.10 1.91 8.07 -51.93 -0.42 1.49 16 45 H 0.05 1.37 5.76 -51.93 -0.30 1.07 16 46 H 0.08 2.10 6.87 -51.93 -0.36 1.75 16 47 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 1.24 6.26 -51.93 -0.33 0.92 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -39.49 383.74 -8.77 -48.26 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.70 Total: -0.80 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -1.86 Total: 10.55 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -1.12 Total: -61.65 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.15 Total: -20.47 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.49 -8.77 -48.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957286396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.895 kcal (2) G-P(sol) polarization free energy of solvation -39.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds