Wall clock time and date at job start Wed Apr 1 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47283 * 2 1 4 4 C 1.34773 * 120.00070 * 99.24044 * 3 2 1 5 5 O 1.21549 * 120.00129 * 186.67984 * 4 3 2 6 6 C 1.47862 * 119.99965 * 6.68200 * 4 3 2 7 7 C 1.39711 * 120.07257 * 328.88487 * 6 4 3 8 8 C 1.38058 * 120.14295 * 180.02562 * 7 6 4 9 9 C 1.38095 * 120.29650 * 359.97438 * 8 7 6 10 10 C 1.39663 * 120.14907 * 359.97438 * 9 8 7 11 11 C 1.47861 * 120.07505 * 179.97438 * 10 9 8 12 12 O 1.21549 * 119.99532 * 201.96628 * 11 10 9 13 13 N 1.34771 * 119.99969 * 21.97122 * 11 10 9 14 14 C 1.46502 * 119.99875 * 185.06903 * 13 11 10 15 15 C 1.46501 * 119.99835 * 5.05936 * 13 11 10 16 16 C 1.39294 * 120.07402 * 149.12330 * 6 4 3 17 17 C 1.46500 * 119.99760 * 279.24798 * 3 2 1 18 18 C 1.53950 * 113.73913 * 222.66088 * 17 3 2 19 19 N 1.47813 * 86.03786 * 222.08345 * 18 17 3 20 20 C 1.36928 * 134.45706 * 204.64273 * 19 18 17 21 21 H 1.08002 * 120.00017 * 184.79710 * 20 19 18 22 22 C 1.38813 * 120.00283 * 4.79497 * 20 19 18 23 23 N 1.31619 * 119.99604 * 5.10648 * 22 20 19 24 24 Si 1.86800 * 120.00193 * 185.10500 * 22 20 19 25 25 H 1.48491 * 109.47323 * 95.00062 * 24 22 20 26 26 H 1.48508 * 109.46816 * 214.99830 * 24 22 20 27 27 H 1.48500 * 109.47231 * 334.99256 * 24 22 20 28 28 C 1.47586 * 91.04815 * 24.54990 * 19 18 17 29 29 H 1.09001 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47418 * 299.99826 * 1 2 3 31 31 H 1.08996 * 109.47039 * 60.00403 * 1 2 3 32 32 H 1.09002 * 109.46947 * 239.99574 * 2 1 3 33 33 H 1.09005 * 109.47210 * 120.00145 * 2 1 3 34 34 H 1.07999 * 119.92408 * 359.97438 * 7 6 4 35 35 H 1.07995 * 119.84700 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.92167 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46889 * 179.97438 * 14 13 11 38 38 H 1.08994 * 109.47257 * 59.99601 * 14 13 11 39 39 H 1.08999 * 109.46860 * 299.99480 * 14 13 11 40 40 H 1.09003 * 109.47398 * 264.25519 * 15 13 11 41 41 H 1.08997 * 109.47340 * 24.26103 * 15 13 11 42 42 H 1.09002 * 109.46803 * 144.25956 * 15 13 11 43 43 H 1.07998 * 120.14614 * 359.97438 * 16 6 4 44 44 H 1.08991 * 112.94589 * 354.24843 * 17 3 2 45 45 H 1.09002 * 113.76671 * 336.34691 * 18 17 3 46 46 H 1.08994 * 113.76873 * 107.74396 * 18 17 3 47 47 H 0.96997 * 120.00010 * 179.97438 * 23 22 20 48 48 H 1.08999 * 113.76428 * 221.14967 * 28 19 18 49 49 H 1.08996 * 113.77032 * 89.75983 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4197 1.9540 1.1520 5 8 2.7094 3.1342 1.1752 6 6 2.5076 1.1468 2.3877 7 6 1.6359 0.0731 2.5861 8 6 1.7164 -0.6812 3.7395 9 6 2.6579 -0.3810 4.7040 10 6 3.5362 0.6889 4.5180 11 6 4.5433 1.0093 5.5520 12 8 5.0247 2.1241 5.6067 13 7 4.9277 0.0652 6.4337 14 6 5.8407 0.4113 7.5259 15 6 4.4322 -1.3070 6.3001 16 6 3.4564 1.4581 3.3588 17 6 2.0703 2.1397 -1.2523 18 6 3.3586 2.9648 -1.4241 19 7 2.4805 4.0391 -1.9337 20 6 2.6618 5.1132 -2.7634 21 1 1.8552 5.8130 -2.9250 22 6 3.8823 5.3028 -3.3968 23 7 4.8315 4.3984 -3.2805 24 14 4.1776 6.8413 -4.4143 25 1 4.8541 7.8653 -3.5784 26 1 5.0362 6.5071 -5.5791 27 1 2.8774 7.3743 -4.8946 28 6 1.3301 3.4881 -1.1913 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.8970 -0.1666 1.8358 35 1 1.0404 -1.5104 3.8877 36 1 2.7158 -0.9754 5.6039 37 1 6.0354 -0.4742 8.1310 38 1 5.3875 1.1834 8.1475 39 1 6.7783 0.7822 7.1118 40 1 3.5643 -1.4444 6.9451 41 1 4.1478 -1.4913 5.2641 42 1 5.2159 -2.0062 6.5916 43 1 4.1304 2.2891 3.2119 44 1 1.8150 1.5380 -2.1244 45 1 3.8521 3.2098 -0.4836 46 1 4.0416 2.5622 -2.1721 47 1 5.6843 4.5306 -3.7235 48 1 0.3966 3.5028 -1.7538 49 1 1.2265 3.8872 -0.1823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957286396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:36 Heat of formation + Delta-G solvation = 58.511635 kcal Electronic energy + Delta-G solvation = -30718.551700 eV Core-core repulsion = 26649.553653 eV Total energy + Delta-G solvation = -4068.998047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11827 -41.27944 -39.52934 -38.31219 -37.02064 -36.80225 -34.29023 -32.71012 -32.26462 -31.34050 -29.50217 -28.84169 -27.59706 -26.61455 -25.90521 -24.69900 -24.05668 -23.62558 -21.90368 -21.30223 -19.90880 -18.83082 -18.44860 -17.99147 -17.58551 -17.33304 -17.08052 -16.86959 -16.56415 -16.33708 -15.80192 -15.55644 -15.30239 -15.12730 -14.81364 -14.56406 -14.41970 -14.21335 -14.05254 -13.80876 -13.71904 -13.56248 -13.42960 -13.33644 -13.02089 -12.92559 -12.85057 -12.71108 -12.48977 -12.38180 -12.03338 -11.96389 -11.95177 -11.73830 -11.53389 -11.15098 -11.01370 -10.61426 -10.10742 -9.94097 -9.71189 -9.54680 -8.91392 -7.92665 -5.28354 -0.35138 -0.00672 1.39230 1.44187 1.49682 1.52475 1.79933 1.89197 2.03733 2.45821 2.73307 3.23670 3.38466 3.41009 3.48827 3.79067 3.84709 3.90106 3.97182 4.17017 4.22791 4.27276 4.29955 4.37409 4.41361 4.45420 4.55437 4.60279 4.65668 4.71149 4.80736 4.84749 4.88105 4.90425 4.91975 4.97107 5.00970 5.16099 5.19679 5.20601 5.24517 5.29098 5.43512 5.45378 5.47907 5.75888 5.84110 5.89500 6.20558 6.45951 6.86716 6.98541 7.18867 7.56082 8.53889 9.23054 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002745 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.094866 B =10199.513662 C =11757.278605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 N -0.590 5.590 4 C 0.540 3.460 5 O -0.571 6.571 6 C -0.148 4.148 7 C -0.082 4.082 8 C -0.113 4.113 9 C -0.070 4.070 10 C -0.155 4.155 11 C 0.545 3.455 12 O -0.591 6.591 13 N -0.611 5.611 14 C 0.085 3.915 15 C 0.046 3.954 16 C -0.038 4.038 17 C 0.131 3.869 18 C 0.144 3.856 19 N -0.632 5.632 20 C -0.236 4.236 21 H 0.082 0.918 22 C -0.071 4.071 23 N -0.952 5.952 24 Si 0.984 3.016 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.262 1.262 28 C 0.114 3.886 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.195 0.805 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.014 0.986 46 H 0.047 0.953 47 H 0.248 0.752 48 H 0.059 0.941 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 -26.980 21.168 35.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.058 4.058 3 N -0.322 5.322 4 C 0.330 3.670 5 O -0.451 6.451 6 C -0.151 4.151 7 C -0.100 4.100 8 C -0.131 4.131 9 C -0.087 4.087 10 C -0.158 4.158 11 C 0.335 3.665 12 O -0.473 6.473 13 N -0.343 5.343 14 C -0.057 4.057 15 C -0.094 4.094 16 C -0.058 4.058 17 C 0.027 3.973 18 C 0.018 3.982 19 N -0.359 5.359 20 C -0.364 4.364 21 H 0.100 0.900 22 C -0.264 4.264 23 N -0.600 5.600 24 Si 0.812 3.188 25 H -0.222 1.222 26 H -0.213 1.213 27 H -0.186 1.186 28 C -0.012 4.012 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.202 0.798 35 H 0.211 0.789 36 H 0.211 0.789 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.031 0.969 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.942 -25.636 20.993 34.320 hybrid contribution 1.187 2.153 -0.721 2.562 sum -7.755 -23.483 20.272 31.977 Atomic orbital electron populations 1.22300 0.93656 1.04710 1.02610 1.22834 0.96146 0.80551 1.06254 1.48002 1.62948 1.15294 1.05905 1.18939 0.76854 0.86774 0.84458 1.90848 1.50230 1.18182 1.85878 1.19776 1.01061 0.99729 0.94529 1.22851 0.96988 0.90859 0.99258 1.21749 0.98539 1.01156 0.91618 1.22863 0.91228 0.92935 1.01695 1.19740 1.00786 1.00368 0.94943 1.18749 0.81736 0.84282 0.81760 1.90786 1.57956 1.24589 1.73970 1.47759 1.47348 1.10960 1.28232 1.21802 0.92327 1.03081 0.88527 1.22949 1.02139 0.79776 1.04508 1.21055 0.96066 0.96365 0.92358 1.23377 0.96794 0.90972 0.86202 1.22610 0.93665 0.86968 0.94997 1.46052 1.08093 1.30636 1.51094 1.19430 0.98455 1.01179 1.17358 0.90025 1.25735 0.96154 1.02053 1.02420 1.70043 1.05409 1.35960 1.48631 0.84977 0.78107 0.78300 0.77445 1.22178 1.21255 1.18584 1.22994 0.91786 0.91646 0.94788 0.87174 0.92037 0.92606 0.88978 0.85934 0.79768 0.78897 0.78865 0.86139 0.92868 0.93713 0.88456 0.88627 0.88487 0.89114 0.84979 0.96852 0.93508 0.94283 0.92270 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.15 71.98 0.66 -1.59 16 2 C 0.06 1.13 5.58 86.38 0.48 1.61 16 3 N -0.59 -19.09 2.74 -806.88 -2.21 -21.30 16 4 C 0.54 20.76 6.86 86.79 0.60 21.36 16 5 O -0.57 -29.44 12.46 -3.87 -0.05 -29.48 16 6 C -0.15 -4.29 5.56 -20.12 -0.11 -4.40 16 7 C -0.08 -1.30 7.46 22.58 0.17 -1.13 16 8 C -0.11 -0.94 10.02 22.19 0.22 -0.72 16 9 C -0.07 -0.79 7.56 22.58 0.17 -0.62 16 10 C -0.16 -3.72 5.56 -20.12 -0.11 -3.83 16 11 C 0.54 14.83 7.52 86.79 0.65 15.48 16 12 O -0.59 -22.98 16.55 -3.87 -0.06 -23.04 16 13 N -0.61 -9.92 3.27 -875.34 -2.87 -12.78 16 14 C 0.08 1.16 10.17 127.77 1.30 2.46 16 15 C 0.05 0.20 8.61 127.77 1.10 1.30 16 16 C -0.04 -1.25 9.13 22.79 0.21 -1.04 16 17 C 0.13 5.35 4.58 46.75 0.21 5.56 16 18 C 0.14 7.99 6.99 86.44 0.60 8.60 16 19 N -0.63 -37.17 3.70 -716.62 -2.65 -39.82 16 20 C -0.24 -14.73 10.69 84.04 0.90 -13.83 16 21 H 0.08 4.87 7.83 -2.91 -0.02 4.84 16 22 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 23 N -0.95 -62.47 11.29 21.65 0.24 -62.22 16 24 Si 0.98 49.64 29.56 68.60 2.03 51.67 16 25 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 28 C 0.11 5.40 8.27 86.48 0.72 6.11 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.83 7.04 -2.39 -0.02 0.81 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.47 8.13 -2.39 -0.02 1.45 16 33 H 0.12 1.68 4.02 -2.43 -0.01 1.67 16 34 H 0.19 2.04 2.69 -2.91 -0.01 2.03 16 35 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 36 H 0.19 0.52 4.15 -2.91 -0.01 0.50 16 37 H 0.12 0.55 7.87 -2.39 -0.02 0.53 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 -0.14 7.19 -2.39 -0.02 -0.16 16 41 H 0.10 0.40 4.96 -2.39 -0.01 0.39 16 42 H 0.10 0.03 8.04 -2.39 -0.02 0.01 16 43 H 0.09 3.85 7.68 -2.91 -0.02 3.83 16 44 H 0.13 4.70 8.07 -2.39 -0.02 4.68 16 45 H 0.01 0.85 5.76 -2.39 -0.01 0.84 16 46 H 0.05 2.82 6.87 -2.39 -0.02 2.80 16 47 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 48 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.03 1.69 6.26 -2.39 -0.01 1.67 16 Total: -1.00 -102.58 383.74 3.65 -98.92 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.99 Total: 6.70 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 8.23 Total: 31.36 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -7.48 Total: -136.13 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.11 Total: -52.53 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.03 Total: 51.67 kcal Total: -102.58 3.65 -98.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957286396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.435 kcal (2) G-P(sol) polarization free energy of solvation -102.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds