Wall clock time and date at job start Wed Apr 1 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47401 * 2 1 4 4 C 1.34771 * 120.00507 * 94.95742 * 3 2 1 5 5 O 1.21533 * 120.00490 * 186.11232 * 4 3 2 6 6 C 1.47952 * 119.99787 * 6.11436 * 4 3 2 7 7 C 1.39214 * 120.19872 * 55.07552 * 6 4 3 8 8 C 1.38208 * 119.99711 * 179.97438 * 7 6 4 9 9 C 1.38370 * 120.39770 * 359.97438 * 8 7 6 10 10 C 1.38211 * 120.39788 * 0.02562 * 9 8 7 11 11 C 1.39212 * 119.99861 * 0.02562 * 10 9 8 12 12 C 1.47940 * 120.19929 * 179.97438 * 11 10 9 13 13 O 1.21534 * 119.99983 * 243.86549 * 12 11 10 14 14 N 1.34781 * 120.00058 * 63.86978 * 12 11 10 15 15 C 1.46498 * 119.99855 * 185.27857 * 14 12 11 16 16 C 1.46490 * 119.99788 * 5.27462 * 14 12 11 17 17 C 1.46509 * 119.99615 * 274.95747 * 3 2 1 18 18 C 1.53943 * 113.74077 * 222.69405 * 17 3 2 19 19 N 1.47811 * 86.03404 * 222.08556 * 18 17 3 20 20 C 1.36941 * 134.45375 * 204.64558 * 19 18 17 21 21 H 1.08000 * 120.00082 * 179.86783 * 20 19 18 22 22 C 1.38809 * 120.00133 * 359.86499 * 20 19 18 23 23 N 1.31621 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00144 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47357 * 89.99876 * 24 22 20 26 26 H 1.48496 * 109.47037 * 210.00263 * 24 22 20 27 27 H 1.48500 * 109.46862 * 329.99647 * 24 22 20 28 28 C 1.47580 * 91.05456 * 24.55292 * 19 18 17 29 29 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46989 * 300.01062 * 1 2 3 31 31 H 1.09007 * 109.46600 * 60.00520 * 1 2 3 32 32 H 1.09001 * 109.47434 * 239.98888 * 2 1 3 33 33 H 1.09007 * 109.46600 * 119.99480 * 2 1 3 34 34 H 1.08006 * 119.99922 * 359.96099 * 7 6 4 35 35 H 1.07999 * 119.80456 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.79722 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.00109 * 179.73219 * 10 9 8 38 38 H 1.09000 * 109.47462 * 89.99694 * 15 14 12 39 39 H 1.09003 * 109.46873 * 209.99448 * 15 14 12 40 40 H 1.08996 * 109.47334 * 329.99727 * 15 14 12 41 41 H 1.09004 * 109.47608 * 355.06746 * 16 14 12 42 42 H 1.09003 * 109.47371 * 115.06868 * 16 14 12 43 43 H 1.09000 * 109.47409 * 235.06658 * 16 14 12 44 44 H 1.08999 * 112.94271 * 354.28825 * 17 3 2 45 45 H 1.09001 * 113.76733 * 336.35095 * 18 17 3 46 46 H 1.09000 * 113.76875 * 107.74339 * 18 17 3 47 47 H 0.97006 * 120.00018 * 180.02562 * 23 22 20 48 48 H 1.09001 * 113.76681 * 221.15354 * 28 19 18 49 49 H 1.08990 * 113.77082 * 89.75103 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3382 1.9829 1.1627 5 8 2.6366 3.1610 1.1754 6 6 2.3260 1.2094 2.4238 7 6 3.0756 0.0417 2.5364 8 6 3.0615 -0.6774 3.7166 9 6 2.3058 -0.2440 4.7916 10 6 1.5555 0.9130 4.6978 11 6 1.5567 1.6495 3.5165 12 6 0.7548 2.8882 3.4111 13 8 -0.1635 2.9520 2.6175 14 7 1.0426 3.9461 4.1951 15 6 0.1793 5.1295 4.1744 16 6 2.2185 3.9124 5.0680 17 6 2.1592 2.1083 -1.2641 18 6 3.4575 2.9293 -1.3656 19 7 2.6188 3.9902 -1.9621 20 6 2.8593 5.0434 -2.8036 21 1 2.0491 5.6921 -3.1020 22 6 4.1445 5.2771 -3.2731 23 7 5.1319 4.4862 -2.9098 24 14 4.4728 6.7142 -4.4205 25 1 4.8132 7.9184 -3.6209 26 1 5.6063 6.3805 -5.3200 27 1 3.2598 6.9860 -5.2329 28 6 1.4184 3.4576 -1.2888 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.6679 -0.3023 1.7013 35 1 3.6439 -1.5830 3.8003 36 1 2.3023 -0.8132 5.7094 37 1 0.9646 1.2430 5.5394 38 1 -0.6056 5.0199 4.9227 39 1 0.7728 6.0161 4.3977 40 1 -0.2716 5.2331 3.1875 41 1 2.6833 2.9279 5.0138 42 1 2.9329 4.6697 4.7447 43 1 1.9147 4.1147 6.0951 44 1 1.9648 1.4848 -2.1368 45 1 3.8841 3.1978 -0.3991 46 1 4.1908 2.5084 -2.0535 47 1 6.0301 4.6498 -3.2376 48 1 0.5266 3.4577 -1.9156 49 1 1.2448 3.8816 -0.2999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957287964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:40 Heat of formation + Delta-G solvation = 17.730419 kcal Electronic energy + Delta-G solvation = -32102.983784 eV Core-core repulsion = 28032.217332 eV Total energy + Delta-G solvation = -4070.766453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09089 -40.93191 -39.43157 -38.35638 -36.71586 -36.60605 -34.23003 -32.54009 -32.27189 -31.31910 -29.32306 -28.97496 -27.39463 -26.64124 -25.92159 -24.72343 -24.15037 -23.59945 -22.07234 -20.90213 -19.92102 -18.81242 -18.44550 -18.07701 -17.52433 -17.38873 -16.96606 -16.86979 -16.42213 -16.19744 -15.76781 -15.53642 -15.39483 -14.97894 -14.70483 -14.52497 -14.36600 -14.19642 -14.09792 -13.85745 -13.65475 -13.48746 -13.44806 -13.39410 -13.08463 -13.02954 -12.90255 -12.82416 -12.73569 -12.52141 -12.32963 -12.05782 -12.00633 -11.83448 -11.53376 -11.17608 -11.01363 -10.57735 -9.98743 -9.95084 -9.75431 -9.53600 -8.93548 -7.94051 -5.28203 -0.13403 0.15858 1.39635 1.43907 1.44813 1.52743 1.66500 1.93070 2.04072 2.45940 2.68900 3.23320 3.34351 3.42829 3.48255 3.77954 3.85715 4.04591 4.13099 4.17334 4.18092 4.27810 4.33857 4.38317 4.41264 4.42516 4.52125 4.55213 4.65026 4.66115 4.76518 4.79000 4.81361 4.82040 4.90874 4.93950 4.96331 5.17068 5.21513 5.25398 5.30470 5.35961 5.40775 5.41938 5.43328 5.82028 5.85307 5.87826 6.20031 6.44889 6.87244 6.98635 7.18201 7.54469 8.53143 9.23469 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.003715 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.648652 B = 7535.409707 C = 8444.869603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 N -0.593 5.593 4 C 0.545 3.455 5 O -0.561 6.561 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.089 4.089 9 C -0.088 4.088 10 C -0.090 4.090 11 C -0.104 4.104 12 C 0.551 3.449 13 O -0.576 6.576 14 N -0.615 5.615 15 C 0.084 3.916 16 C 0.073 3.927 17 C 0.126 3.874 18 C 0.163 3.837 19 N -0.629 5.629 20 C -0.242 4.242 21 H 0.079 0.921 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.986 3.014 25 H -0.289 1.289 26 H -0.285 1.285 27 H -0.266 1.266 28 C 0.114 3.886 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.021 0.979 46 H 0.044 0.956 47 H 0.250 0.750 48 H 0.046 0.954 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -16.740 22.005 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.031 4.031 3 N -0.324 5.324 4 C 0.334 3.666 5 O -0.440 6.440 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.106 4.106 10 C -0.108 4.108 11 C -0.108 4.108 12 C 0.340 3.660 13 O -0.457 6.457 14 N -0.347 5.347 15 C -0.058 4.058 16 C -0.068 4.068 17 C 0.022 3.978 18 C 0.037 3.963 19 N -0.356 5.356 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.813 3.187 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.190 1.190 28 C -0.012 4.012 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.191 0.809 36 H 0.194 0.806 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.148 0.852 45 H 0.039 0.961 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.457 -15.859 21.383 27.394 hybrid contribution 0.226 1.748 -0.973 2.013 sum -6.231 -14.111 20.410 25.583 Atomic orbital electron populations 1.22107 0.95566 1.03150 1.01104 1.22131 0.94981 0.80528 1.05411 1.48001 1.63942 1.15462 1.05006 1.18973 0.76403 0.86562 0.84655 1.90835 1.48852 1.17469 1.86824 1.19824 1.01096 0.97429 0.92347 1.21455 0.97641 0.91901 1.00582 1.21726 0.97757 1.00162 0.90991 1.21739 0.93878 0.94551 1.00386 1.21422 0.99233 0.95447 0.94723 1.19732 0.99315 0.95991 0.95746 1.18920 0.83294 0.84533 0.79283 1.90758 1.33641 1.83610 1.37642 1.47760 1.28591 1.15873 1.42478 1.21703 0.94938 0.87110 1.02035 1.22092 0.86268 1.03910 0.94577 1.23424 0.97058 0.91322 0.86026 1.22436 0.92862 0.86318 0.94679 1.46094 1.05886 1.32354 1.51242 1.19430 0.94421 1.04529 1.18617 0.90366 1.25701 0.94972 1.02297 1.02805 1.70042 0.99979 1.40743 1.49325 0.84985 0.77741 0.78053 0.77955 1.21621 1.21071 1.19036 1.22883 0.91069 0.92605 0.94652 0.88452 0.94752 0.93611 0.88038 0.87690 0.83800 0.80857 0.80562 0.83010 0.90120 0.89198 0.93957 0.89734 0.92802 0.88051 0.85218 0.96118 0.93793 0.94096 0.93582 0.95906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.09 2.22 5.96 86.38 0.52 2.74 16 3 N -0.59 -21.63 2.73 -806.80 -2.20 -23.83 16 4 C 0.55 21.95 5.75 86.82 0.50 22.45 16 5 O -0.56 -28.90 12.09 -3.82 -0.05 -28.95 16 6 C -0.10 -3.03 4.92 -19.87 -0.10 -3.13 16 7 C -0.10 -1.90 7.48 22.50 0.17 -1.73 16 8 C -0.09 -0.96 10.03 22.29 0.22 -0.74 16 9 C -0.09 -0.83 10.03 22.29 0.22 -0.61 16 10 C -0.09 -1.44 8.15 22.50 0.18 -1.26 16 11 C -0.10 -2.83 4.36 -19.87 -0.09 -2.92 16 12 C 0.55 18.94 5.81 86.81 0.50 19.44 16 13 O -0.58 -25.01 16.36 -3.82 -0.06 -25.07 16 14 N -0.62 -17.38 3.27 -875.27 -2.87 -20.25 16 15 C 0.08 2.15 10.52 127.77 1.34 3.50 16 16 C 0.07 1.44 10.39 127.77 1.33 2.76 16 17 C 0.13 5.56 4.60 46.75 0.22 5.77 16 18 C 0.16 9.09 6.79 86.44 0.59 9.68 16 19 N -0.63 -37.98 3.70 -716.78 -2.65 -40.63 16 20 C -0.24 -15.35 10.70 84.03 0.90 -14.45 16 21 H 0.08 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.06 -4.03 5.50 84.86 0.47 -3.57 16 23 N -0.95 -61.99 11.39 21.65 0.25 -61.74 16 24 Si 0.99 49.29 29.55 68.60 2.03 51.32 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 C 0.11 5.97 8.27 86.49 0.72 6.69 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.11 2.07 4.46 -2.38 -0.01 2.06 16 34 H 0.14 2.53 7.60 -2.91 -0.02 2.51 16 35 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 40 H 0.04 1.39 7.35 -2.39 -0.02 1.37 16 41 H 0.08 1.58 5.22 -2.38 -0.01 1.56 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.13 5.02 8.04 -2.39 -0.02 5.00 16 45 H 0.02 1.29 5.74 -2.39 -0.01 1.28 16 46 H 0.04 2.60 7.16 -2.39 -0.02 2.59 16 47 H 0.25 15.57 8.31 -92.70 -0.77 14.80 16 48 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.02 1.35 6.28 -2.39 -0.02 1.34 16 Total: -1.00 -96.60 395.22 3.82 -92.78 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.95 Total: 14.94 kcal Atomic # 6 Polarization: 33.00 SS G_CDS: 8.42 Total: 41.43 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -7.48 Total: -146.45 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.11 Total: -54.02 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -96.60 3.82 -92.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957287964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.510 kcal (2) G-P(sol) polarization free energy of solvation -96.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds