Wall clock time and date at job start Wed Apr 1 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47412 * 2 1 4 4 C 1.34777 * 119.99694 * 254.11312 * 3 2 1 5 5 O 1.21551 * 119.99643 * 184.51143 * 4 3 2 6 6 C 1.47843 * 119.99980 * 4.50991 * 4 3 2 7 7 C 1.39591 * 120.14859 * 22.41462 * 6 4 3 8 8 C 1.37933 * 119.85521 * 179.74330 * 7 6 4 9 9 C 1.38387 * 120.14069 * 0.53723 * 8 7 6 10 10 C 1.38333 * 120.29296 * 359.73543 * 9 8 7 11 11 C 1.50699 * 119.92504 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.47533 * 269.98391 * 11 10 9 13 13 C 1.34778 * 120.00340 * 180.02562 * 12 11 10 14 14 C 1.50696 * 119.99935 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99764 * 359.97438 * 13 12 11 16 16 C 1.37973 * 120.14722 * 359.97438 * 10 9 8 17 17 C 1.46496 * 119.99795 * 74.10353 * 3 2 1 18 18 C 1.53955 * 113.73701 * 141.26268 * 17 3 2 19 19 N 1.47820 * 86.03217 * 90.88424 * 18 17 3 20 20 C 1.36938 * 134.45226 * 204.63874 * 19 18 17 21 21 H 1.07998 * 119.99475 * 179.86758 * 20 19 18 22 22 C 1.38819 * 120.00094 * 359.87363 * 20 19 18 23 23 N 1.31616 * 119.99618 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47194 * 59.99715 * 24 22 20 26 26 H 1.48502 * 109.47182 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47309 * 300.00348 * 24 22 20 28 28 C 1.47582 * 91.05248 * 24.55220 * 19 18 17 29 29 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47077 * 300.00123 * 1 2 3 31 31 H 1.08995 * 109.47294 * 59.99779 * 1 2 3 32 32 H 1.08992 * 109.47298 * 239.99640 * 2 1 3 33 33 H 1.09005 * 109.47097 * 119.99688 * 2 1 3 34 34 H 1.08000 * 120.06881 * 0.02562 * 7 6 4 35 35 H 1.07995 * 119.92902 * 180.25268 * 8 7 6 36 36 H 1.08002 * 119.85026 * 179.76584 * 9 8 7 37 37 H 1.09000 * 109.47112 * 29.98167 * 11 10 9 38 38 H 1.09004 * 109.47203 * 149.97961 * 11 10 9 39 39 H 0.97003 * 119.99234 * 359.97438 * 12 11 10 40 40 H 1.09000 * 109.47413 * 89.99512 * 14 13 12 41 41 H 1.08998 * 109.47037 * 209.99833 * 14 13 12 42 42 H 1.09005 * 109.47249 * 329.99513 * 14 13 12 43 43 H 1.08001 * 120.07543 * 180.02562 * 16 10 9 44 44 H 1.09000 * 112.95091 * 9.67665 * 17 3 2 45 45 H 1.09006 * 113.76770 * 205.14789 * 18 17 3 46 46 H 1.08998 * 113.76765 * 336.54995 * 18 17 3 47 47 H 0.97003 * 119.99536 * 180.02562 * 23 22 20 48 48 H 1.08999 * 113.76535 * 221.15266 * 28 19 18 49 49 H 1.08993 * 113.77383 * 89.75149 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5443 1.9100 -1.1227 5 8 3.0241 3.0266 -1.1015 6 6 2.5376 1.1319 -2.3797 7 6 1.6184 0.0966 -2.5585 8 6 1.6140 -0.6220 -3.7359 9 6 2.5255 -0.3258 -4.7342 10 6 3.4427 0.6951 -4.5611 11 6 4.4312 1.0110 -5.6538 12 7 5.6465 0.2166 -5.4578 13 6 6.6754 0.3348 -6.3202 14 6 7.9256 -0.4819 -6.1182 15 8 6.5950 1.0986 -7.2590 16 6 3.4539 1.4256 -3.3906 17 6 1.9349 2.1876 1.2202 18 6 3.1586 3.0934 1.4493 19 7 2.4106 4.1210 0.6947 20 6 2.7670 5.2195 -0.0412 21 1 2.0057 5.8262 -0.5090 22 6 4.1067 5.5532 -0.1859 23 7 5.0342 4.8140 0.3845 24 14 4.5928 7.0512 -1.1903 25 1 3.9827 8.2666 -0.5935 26 1 6.0714 7.1889 -1.1899 27 1 4.1105 6.8896 -2.5854 28 6 1.1265 3.4867 1.0507 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.9093 -0.1382 -1.7785 35 1 0.9008 -1.4205 -3.8771 36 1 2.5204 -0.8940 -5.6526 37 1 3.9920 0.7701 -6.6219 38 1 4.6813 2.0715 -5.6222 39 1 5.7108 -0.3939 -4.7067 40 1 7.8294 -1.4303 -6.6467 41 1 8.7840 0.0655 -6.5073 42 1 8.0676 -0.6717 -5.0542 43 1 4.1702 2.2227 -3.2568 44 1 1.6503 1.6048 2.0962 45 1 3.3250 3.3507 2.4954 46 1 4.0615 2.7475 0.9462 47 1 5.9703 5.0473 0.2837 48 1 0.4101 3.4543 0.2298 49 1 0.6947 3.8598 1.9793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957405447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:25 Heat of formation + Delta-G solvation = 83.441194 kcal Electronic energy + Delta-G solvation = -31349.672333 eV Core-core repulsion = 27281.755313 eV Total energy + Delta-G solvation = -4067.917020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.49323 -39.68184 -38.65309 -36.31253 -35.65761 -34.72229 -32.04517 -31.56573 -30.88009 -30.02338 -29.66489 -27.24117 -25.85829 -24.65229 -24.21953 -23.07550 -22.39442 -21.64700 -20.74728 -20.15961 -18.01432 -17.10923 -16.77452 -16.67206 -16.43459 -16.01494 -15.85447 -15.22666 -14.72390 -14.51497 -14.45244 -14.30721 -13.91448 -13.58495 -13.56066 -13.35045 -13.07319 -12.99546 -12.86394 -12.58273 -12.35622 -12.24853 -12.12725 -12.11029 -11.71132 -11.31976 -11.16860 -11.08185 -10.99746 -10.69395 -10.60960 -10.44803 -10.09002 -9.99596 -9.61338 -9.25507 -9.22569 -8.88767 -8.83308 -8.59186 -8.26750 -7.79050 -6.38583 -5.41330 -2.66784 1.02339 1.30281 2.52508 3.06901 3.51847 3.52848 3.57541 3.61300 3.62455 4.18564 4.52724 4.71935 4.72421 4.75675 4.84503 4.93412 5.04227 5.09657 5.16404 5.20044 5.27447 5.35277 5.41509 5.44069 5.55778 5.58444 5.67665 5.69538 5.75478 5.79441 5.84516 5.89961 6.02760 6.05989 6.19044 6.24650 6.34515 6.40783 6.47246 6.51813 6.60368 6.67446 6.89152 7.05356 7.36944 7.41172 7.60631 7.87271 8.09001 8.15757 8.30643 9.23119 9.35686 10.07930 10.93305 11.77772 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008392 B = 0.004276 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.897772 B = 6546.490929 C = 9033.197357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 N -0.597 5.597 4 C 0.504 3.496 5 O -0.393 6.393 6 C -0.111 4.111 7 C -0.123 4.123 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.122 4.122 11 C 0.162 3.838 12 N -0.725 5.725 13 C 0.509 3.491 14 C -0.172 4.172 15 O -0.550 6.550 16 C -0.046 4.046 17 C 0.097 3.903 18 C 0.160 3.840 19 N -0.581 5.581 20 C -0.179 4.179 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.920 5.920 24 Si 0.895 3.105 25 H -0.291 1.291 26 H -0.294 1.294 27 H -0.289 1.289 28 C 0.103 3.897 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.079 0.921 47 H 0.244 0.756 48 H 0.037 0.963 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 -19.966 -5.676 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.045 4.045 3 N -0.334 5.334 4 C 0.287 3.713 5 O -0.258 6.258 6 C -0.114 4.114 7 C -0.140 4.140 8 C -0.153 4.153 9 C -0.110 4.110 10 C -0.122 4.122 11 C 0.039 3.961 12 N -0.378 5.378 13 C 0.296 3.704 14 C -0.232 4.232 15 O -0.428 6.428 16 C -0.065 4.065 17 C -0.008 4.008 18 C 0.034 3.966 19 N -0.307 5.307 20 C -0.307 4.307 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.728 3.272 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.216 1.216 28 C -0.025 4.025 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.237 0.763 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.509 -18.484 -6.525 20.113 hybrid contribution 0.102 0.467 -0.117 0.493 sum -4.406 -18.016 -6.642 19.701 Atomic orbital electron populations 1.22315 0.96583 1.01767 1.02994 1.22283 0.93939 0.84562 1.03718 1.47319 1.63297 1.12092 1.10643 1.18522 0.82249 0.87702 0.82794 1.91492 1.36803 1.14853 1.82611 1.20454 0.97517 0.97068 0.96396 1.22630 0.99088 0.94216 0.98085 1.21088 0.99549 1.00944 0.93693 1.21147 0.94685 0.96294 0.98887 1.19731 0.98673 0.98134 0.95662 1.20183 0.83152 0.96526 0.96276 1.46193 1.16150 1.45019 1.30393 1.20839 0.84830 0.82864 0.81867 1.21880 0.95909 1.01222 1.04191 1.90731 1.82117 1.38630 1.31300 1.21277 0.96880 0.97369 0.90953 1.23042 1.01259 0.91407 0.85108 1.22509 0.94804 0.85232 0.94071 1.45548 0.99101 1.30034 1.56029 1.18546 0.91078 0.99269 1.21792 0.91593 1.24433 0.95493 0.98497 1.00822 1.69769 0.98924 1.39552 1.48666 0.86456 0.77083 0.83215 0.80496 1.21859 1.22004 1.21628 1.22973 0.91633 0.90785 0.97126 0.91865 0.91605 0.91956 0.87952 0.91620 0.82152 0.85780 0.86088 0.90644 0.90292 0.76283 0.88961 0.88858 0.90030 0.84569 0.90554 0.95577 0.90326 0.94571 0.94521 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.06 37.16 0.34 -1.36 16 2 C 0.08 0.90 5.59 -4.04 -0.02 0.88 16 3 N -0.60 -10.01 2.77 -169.00 -0.47 -10.48 16 4 C 0.50 9.99 7.04 -12.33 -0.09 9.91 16 5 O -0.39 -10.02 10.08 5.32 0.05 -9.96 16 6 C -0.11 -1.77 5.61 -104.97 -0.59 -2.36 16 7 C -0.12 -1.47 7.52 -39.19 -0.29 -1.77 16 8 C -0.13 -1.34 10.03 -39.64 -0.40 -1.74 16 9 C -0.09 -0.94 9.69 -39.49 -0.38 -1.32 16 10 C -0.12 -1.50 5.24 -104.68 -0.55 -2.05 16 11 C 0.16 1.96 5.79 -5.19 -0.03 1.93 16 12 N -0.73 -7.75 5.55 -61.47 -0.34 -8.10 16 13 C 0.51 6.08 7.94 -10.99 -0.09 6.00 16 14 C -0.17 -1.30 10.30 36.00 0.37 -0.93 16 15 O -0.55 -9.13 17.10 5.55 0.09 -9.03 16 16 C -0.05 -0.72 9.24 -39.19 -0.36 -1.08 16 17 C 0.10 1.78 4.51 -70.14 -0.32 1.46 16 18 C 0.16 3.83 6.46 -2.83 -0.02 3.82 16 19 N -0.58 -15.23 2.10 -177.85 -0.37 -15.60 16 20 C -0.18 -5.27 8.72 -15.06 -0.13 -5.40 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C 0.00 0.08 5.01 -17.43 -0.09 0.00 16 23 N -0.92 -28.42 11.39 55.49 0.63 -27.79 16 24 Si 0.90 23.89 29.55 -169.99 -5.02 18.86 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 27 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 28 C 0.10 2.14 8.42 -2.96 -0.02 2.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.06 0.65 7.03 -51.93 -0.36 0.28 16 32 H 0.10 1.09 4.02 -52.44 -0.21 0.88 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.16 1.67 2.35 -52.49 -0.12 1.55 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.40 3.41 8.46 -40.82 -0.35 3.07 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.14 2.50 7.82 -52.49 -0.41 2.09 16 44 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 2.15 6.37 -51.93 -0.33 1.81 16 47 H 0.24 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -37.69 391.76 -9.43 -47.12 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.24 Total: 0.98 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.67 Total: 8.10 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.55 Total: -61.97 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.15 Total: -19.00 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.02 Total: 18.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.69 -9.43 -47.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957405447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.557 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds