Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47030 * 2 1 4 4 C 1.34779 * 119.99910 * 260.69242 * 3 2 1 5 5 O 1.21583 * 120.00160 * 174.42816 * 4 3 2 6 6 C 1.47601 * 119.99695 * 354.42567 * 4 3 2 7 7 C 1.39746 * 120.07543 * 48.86120 * 6 4 3 8 8 C 1.37670 * 119.92465 * 179.69966 * 7 6 4 9 9 C 1.39132 * 120.07141 * 0.58858 * 8 7 6 10 10 N 1.39447 * 119.92491 * 179.70529 * 9 8 7 11 11 C 1.46491 * 119.99829 * 190.83283 * 10 9 8 12 12 C 1.34780 * 119.99758 * 10.82667 * 10 9 8 13 13 C 1.50700 * 119.99516 * 186.44615 * 12 10 9 14 14 O 1.21276 * 120.00267 * 6.44378 * 12 10 9 15 15 C 1.39130 * 120.15114 * 359.68228 * 9 8 7 16 16 C 1.37672 * 120.07082 * 0.02562 * 15 9 8 17 17 C 1.46498 * 120.00024 * 80.68605 * 3 2 1 18 18 C 1.53497 * 114.20024 * 120.00189 * 17 3 2 19 19 N 1.47070 * 87.98550 * 87.71939 * 18 17 3 20 20 C 1.36941 * 136.05671 * 207.08382 * 19 18 17 21 21 H 1.07998 * 119.99811 * 6.96171 * 20 19 18 22 22 C 1.38805 * 119.99795 * 186.96190 * 20 19 18 23 23 N 1.31621 * 120.00403 * 5.67945 * 22 20 19 24 24 Si 1.86806 * 119.99859 * 185.67701 * 22 20 19 25 25 H 1.48498 * 109.46860 * 265.00487 * 24 22 20 26 26 H 1.48498 * 109.46968 * 25.00540 * 24 22 20 27 27 H 1.48498 * 109.46979 * 145.00506 * 24 22 20 28 28 C 1.47069 * 87.88444 * 27.34027 * 19 18 17 29 29 H 1.08994 * 109.46908 * 53.25957 * 1 2 3 30 30 H 1.09003 * 109.46734 * 173.25341 * 1 2 3 31 31 H 1.08990 * 109.47180 * 293.25295 * 1 2 3 32 32 H 1.08998 * 109.47231 * 239.99695 * 2 1 3 33 33 H 1.09003 * 109.46550 * 119.99741 * 2 1 3 34 34 H 1.08004 * 120.03712 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.96336 * 180.27214 * 8 7 6 36 36 H 1.09004 * 109.47655 * 94.99317 * 11 10 9 37 37 H 1.09001 * 109.47122 * 214.98652 * 11 10 9 38 38 H 1.09005 * 109.47570 * 334.98877 * 11 10 9 39 39 H 1.08998 * 109.47760 * 93.80881 * 13 12 10 40 40 H 1.09004 * 109.46617 * 213.80794 * 13 12 10 41 41 H 1.08997 * 109.47355 * 333.79882 * 13 12 10 42 42 H 1.07995 * 119.96419 * 180.02562 * 15 9 8 43 43 H 1.07999 * 120.03493 * 179.97438 * 16 15 9 44 44 H 1.08996 * 113.28520 * 346.93937 * 17 3 2 45 45 H 1.08995 * 113.47335 * 332.93746 * 18 17 3 46 46 H 1.09007 * 113.52004 * 202.50505 * 18 17 3 47 47 H 0.96994 * 120.00479 * 179.97438 * 23 22 20 48 48 H 1.09000 * 113.46492 * 87.44032 * 28 19 18 49 49 H 1.09002 * 113.46538 * 217.87786 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4210 1.9536 -1.1519 5 8 2.7301 3.1294 -1.1709 6 6 2.4867 1.1531 -2.3902 7 6 1.4017 0.3575 -2.7682 8 6 1.4639 -0.3831 -3.9270 9 6 2.6101 -0.3496 -4.7151 10 7 2.6721 -1.1058 -5.8851 11 6 3.9472 -1.2627 -6.5890 12 6 1.5590 -1.6924 -6.3682 13 6 1.6507 -2.6264 -7.5472 14 8 0.4837 -1.4686 -5.8540 15 6 3.6942 0.4369 -4.3387 16 6 3.6362 1.1847 -3.1842 17 6 2.0689 2.1403 1.2520 18 6 3.4742 2.6202 1.6405 19 7 3.2297 3.8247 0.8329 20 6 3.9999 4.7219 0.1423 21 1 5.0593 4.5469 0.0258 22 6 3.4192 5.8562 -0.4080 23 7 2.1530 6.1276 -0.1724 24 14 4.4347 6.9977 -1.4829 25 1 4.9737 8.1070 -0.6558 26 1 5.5592 6.2387 -2.0867 27 1 3.5783 7.5547 -2.5606 28 6 1.7944 3.6453 1.0988 29 1 -0.3633 0.6147 -0.8235 30 1 -0.3633 -1.0206 -0.1207 31 1 -0.3633 0.4057 0.9441 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5137 0.3272 -2.1542 35 1 0.6242 -0.9947 -4.2220 36 1 4.4251 -2.1901 -6.2731 37 1 3.7675 -1.2944 -7.6636 38 1 4.5980 -0.4204 -6.3541 39 1 1.7454 -3.6524 -7.1916 40 1 0.7503 -2.5342 -8.1546 41 1 2.5224 -2.3682 -8.1484 42 1 4.5822 0.4610 -4.9529 43 1 4.4783 1.7947 -2.8924 44 1 1.5174 1.6679 2.0648 45 1 4.2722 1.9895 1.2487 46 1 3.5846 2.8265 2.7052 47 1 1.7472 6.9204 -0.5566 48 1 1.4609 4.1217 2.0207 49 1 1.1612 3.8880 0.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957440090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = 95.638869 kcal Electronic energy + Delta-G solvation = -31592.220867 eV Core-core repulsion = 27524.832778 eV Total energy + Delta-G solvation = -4067.388089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.05555 -39.92340 -38.25280 -36.52804 -35.59709 -34.99723 -31.85671 -31.38407 -30.84020 -29.72087 -29.03249 -27.43723 -27.07927 -24.39926 -24.18553 -22.93966 -22.58613 -22.24500 -20.42454 -19.83674 -18.04801 -17.67771 -17.12532 -16.69997 -16.38077 -16.30380 -15.38280 -14.86898 -14.69227 -14.51353 -14.47818 -14.04271 -13.93402 -13.70137 -13.51553 -13.36170 -13.22665 -13.01104 -12.85868 -12.65695 -12.45636 -12.40125 -12.20868 -12.12340 -11.89389 -11.45483 -11.15850 -11.09221 -10.99786 -10.77893 -10.61595 -10.46358 -10.19562 -9.86283 -9.65318 -9.62932 -9.13134 -8.78355 -8.60981 -8.28580 -7.79727 -7.63762 -6.33332 -5.40653 -2.64541 1.14662 1.58094 2.28416 2.53061 3.56867 3.61035 3.62604 3.64400 3.65236 4.08123 4.16606 4.51780 4.63963 4.75535 4.85399 4.95242 5.01328 5.04145 5.11034 5.18588 5.26154 5.35848 5.41691 5.43977 5.50949 5.55372 5.64526 5.65902 5.75693 5.83129 5.92598 5.99697 6.13807 6.21136 6.23508 6.36549 6.40919 6.48179 6.56540 6.63291 6.72284 6.76152 7.03679 7.09862 7.17720 7.45929 7.64665 7.74525 7.90361 8.26856 8.32719 9.33299 9.37308 10.09821 11.01779 11.80302 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003513 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.772269 B = 7969.357887 C = 9414.285601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 N -0.596 5.596 4 C 0.509 3.491 5 O -0.400 6.400 6 C -0.126 4.126 7 C -0.084 4.084 8 C -0.163 4.163 9 C 0.150 3.850 10 N -0.555 5.555 11 C 0.064 3.936 12 C 0.508 3.492 13 C -0.175 4.175 14 O -0.518 6.518 15 C -0.165 4.165 16 C -0.051 4.051 17 C 0.088 3.912 18 C 0.099 3.901 19 N -0.580 5.580 20 C -0.171 4.171 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.919 5.919 24 Si 0.899 3.101 25 H -0.296 1.296 26 H -0.285 1.285 27 H -0.294 1.294 28 C 0.162 3.838 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.245 0.755 48 H 0.028 0.972 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -22.746 -10.825 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 N -0.333 5.333 4 C 0.293 3.707 5 O -0.265 6.265 6 C -0.130 4.130 7 C -0.103 4.103 8 C -0.183 4.183 9 C 0.056 3.944 10 N -0.279 5.279 11 C -0.078 4.078 12 C 0.299 3.701 13 C -0.234 4.234 14 O -0.395 6.395 15 C -0.186 4.186 16 C -0.070 4.070 17 C -0.017 4.017 18 C -0.029 4.029 19 N -0.305 5.305 20 C -0.299 4.299 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.731 3.269 25 H -0.224 1.224 26 H -0.211 1.211 27 H -0.221 1.221 28 C 0.035 3.965 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.185 0.815 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.036 -21.667 -10.893 24.251 hybrid contribution 0.699 0.635 -0.631 1.136 sum 0.663 -21.032 -11.524 23.992 Atomic orbital electron populations 1.22356 0.96708 1.01533 1.02679 1.21577 0.93864 0.83911 1.02652 1.47319 1.66413 1.12578 1.06954 1.18509 0.80689 0.88688 0.82829 1.91467 1.40170 1.12343 1.82546 1.20373 0.95462 0.99307 0.97856 1.21701 0.98331 0.94215 0.96022 1.22074 0.99170 1.02682 0.94327 1.18021 0.95947 0.93826 0.86600 1.45376 1.10174 1.48480 1.23829 1.22114 0.84876 1.03548 0.97289 1.21012 0.82904 0.80847 0.85379 1.22017 1.05375 0.99652 0.96347 1.90529 1.28098 1.61547 1.59297 1.20715 0.98607 1.00043 0.99185 1.20961 0.97430 0.96052 0.92569 1.22833 0.98716 0.95218 0.84901 1.22879 0.94815 0.90394 0.94793 1.45256 1.02423 1.28858 1.53932 1.18467 0.90043 0.97442 1.23939 0.91481 1.24499 0.96042 0.97603 1.01244 1.69803 1.11120 1.27288 1.48524 0.86292 0.79012 0.80981 0.80588 1.22426 1.21078 1.22108 1.22199 0.89336 0.86533 0.98416 0.92018 0.92059 0.92112 0.90059 0.91494 0.84498 0.81472 0.91325 0.90070 0.89435 0.88323 0.88509 0.89687 0.85497 0.84937 0.89979 0.94869 0.94840 0.94512 0.95432 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.36 37.16 0.35 -1.72 16 2 C 0.10 1.39 5.62 -4.04 -0.02 1.36 16 3 N -0.60 -10.81 2.76 -166.93 -0.46 -11.27 16 4 C 0.51 10.78 6.82 -12.44 -0.08 10.70 16 5 O -0.40 -10.69 10.33 5.29 0.05 -10.63 16 6 C -0.13 -2.24 4.97 -104.95 -0.52 -2.76 16 7 C -0.08 -1.31 7.43 -39.23 -0.29 -1.60 16 8 C -0.16 -2.40 8.90 -39.46 -0.35 -2.76 16 9 C 0.15 2.00 6.46 -83.73 -0.54 1.46 16 10 N -0.56 -5.60 3.09 -120.82 -0.37 -5.97 16 11 C 0.06 0.35 9.76 59.84 0.58 0.94 16 12 C 0.51 5.20 7.66 -10.98 -0.08 5.12 16 13 C -0.17 -0.89 9.88 36.01 0.36 -0.53 16 14 O -0.52 -7.34 13.67 5.56 0.08 -7.26 16 15 C -0.17 -2.20 9.28 -39.46 -0.37 -2.57 16 16 C -0.05 -0.84 9.71 -39.22 -0.38 -1.22 16 17 C 0.09 1.72 4.87 -67.68 -0.33 1.39 16 18 C 0.10 2.15 8.26 -8.50 -0.07 2.08 16 19 N -0.58 -15.66 2.18 -184.60 -0.40 -16.07 16 20 C -0.17 -5.13 8.60 -15.06 -0.13 -5.26 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 22 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 23 N -0.92 -29.36 11.80 55.49 0.66 -28.71 16 24 Si 0.90 24.16 29.56 -169.99 -5.02 19.14 16 25 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 26 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 28 C 0.16 4.04 6.15 -8.37 -0.05 3.99 16 29 H 0.06 0.82 6.17 -51.93 -0.32 0.50 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.06 5.13 -51.93 -0.27 0.80 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.14 1.98 4.13 -52.48 -0.22 1.77 16 35 H 0.17 2.52 4.86 -54.43 -0.26 2.26 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.25 6.20 -51.93 -0.32 -0.07 16 38 H 0.09 0.48 5.66 -51.93 -0.29 0.19 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.23 5.79 -51.93 -0.30 -0.07 16 42 H 0.13 1.30 5.88 -52.49 -0.31 0.99 16 43 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.24 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 1.93 6.66 -51.93 -0.35 1.58 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -38.87 379.61 -8.61 -47.49 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.83 Total: -1.02 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.03 Total: 8.59 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.58 Total: -62.02 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.13 Total: -17.89 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.02 Total: 19.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.87 -8.61 -47.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957440090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.126 kcal (2) G-P(sol) polarization free energy of solvation -38.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds