Wall clock time and date at job start Wed Apr 1 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47030 * 2 1 4 4 C 1.34779 * 119.99910 * 260.69242 * 3 2 1 5 5 O 1.21583 * 120.00160 * 174.42816 * 4 3 2 6 6 C 1.47601 * 119.99695 * 354.42567 * 4 3 2 7 7 C 1.39746 * 120.07543 * 48.86120 * 6 4 3 8 8 C 1.37670 * 119.92465 * 179.69966 * 7 6 4 9 9 C 1.39132 * 120.07141 * 0.58858 * 8 7 6 10 10 N 1.39447 * 119.92491 * 179.70529 * 9 8 7 11 11 C 1.46491 * 119.99829 * 190.83283 * 10 9 8 12 12 C 1.34780 * 119.99758 * 10.82667 * 10 9 8 13 13 C 1.50700 * 119.99516 * 186.44615 * 12 10 9 14 14 O 1.21276 * 120.00267 * 6.44378 * 12 10 9 15 15 C 1.39130 * 120.15114 * 359.68228 * 9 8 7 16 16 C 1.37672 * 120.07082 * 0.02562 * 15 9 8 17 17 C 1.46498 * 120.00024 * 80.68605 * 3 2 1 18 18 C 1.53497 * 114.20024 * 120.00189 * 17 3 2 19 19 N 1.47070 * 87.98550 * 87.71939 * 18 17 3 20 20 C 1.36941 * 136.05671 * 207.08382 * 19 18 17 21 21 H 1.07998 * 119.99811 * 6.96171 * 20 19 18 22 22 C 1.38805 * 119.99795 * 186.96190 * 20 19 18 23 23 N 1.31621 * 120.00403 * 5.67945 * 22 20 19 24 24 Si 1.86806 * 119.99859 * 185.67701 * 22 20 19 25 25 H 1.48498 * 109.46860 * 265.00487 * 24 22 20 26 26 H 1.48498 * 109.46968 * 25.00540 * 24 22 20 27 27 H 1.48498 * 109.46979 * 145.00506 * 24 22 20 28 28 C 1.47069 * 87.88444 * 27.34027 * 19 18 17 29 29 H 1.08994 * 109.46908 * 53.25957 * 1 2 3 30 30 H 1.09003 * 109.46734 * 173.25341 * 1 2 3 31 31 H 1.08990 * 109.47180 * 293.25295 * 1 2 3 32 32 H 1.08998 * 109.47231 * 239.99695 * 2 1 3 33 33 H 1.09003 * 109.46550 * 119.99741 * 2 1 3 34 34 H 1.08004 * 120.03712 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.96336 * 180.27214 * 8 7 6 36 36 H 1.09004 * 109.47655 * 94.99317 * 11 10 9 37 37 H 1.09001 * 109.47122 * 214.98652 * 11 10 9 38 38 H 1.09005 * 109.47570 * 334.98877 * 11 10 9 39 39 H 1.08998 * 109.47760 * 93.80881 * 13 12 10 40 40 H 1.09004 * 109.46617 * 213.80794 * 13 12 10 41 41 H 1.08997 * 109.47355 * 333.79882 * 13 12 10 42 42 H 1.07995 * 119.96419 * 180.02562 * 15 9 8 43 43 H 1.07999 * 120.03493 * 179.97438 * 16 15 9 44 44 H 1.08996 * 113.28520 * 346.93937 * 17 3 2 45 45 H 1.08995 * 113.47335 * 332.93746 * 18 17 3 46 46 H 1.09007 * 113.52004 * 202.50505 * 18 17 3 47 47 H 0.96994 * 120.00479 * 179.97438 * 23 22 20 48 48 H 1.09000 * 113.46492 * 87.44032 * 28 19 18 49 49 H 1.09002 * 113.46538 * 217.87786 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4210 1.9536 -1.1519 5 8 2.7301 3.1294 -1.1709 6 6 2.4867 1.1531 -2.3902 7 6 1.4017 0.3575 -2.7682 8 6 1.4639 -0.3831 -3.9270 9 6 2.6101 -0.3496 -4.7151 10 7 2.6721 -1.1058 -5.8851 11 6 3.9472 -1.2627 -6.5890 12 6 1.5590 -1.6924 -6.3682 13 6 1.6507 -2.6264 -7.5472 14 8 0.4837 -1.4686 -5.8540 15 6 3.6942 0.4369 -4.3387 16 6 3.6362 1.1847 -3.1842 17 6 2.0689 2.1403 1.2520 18 6 3.4742 2.6202 1.6405 19 7 3.2297 3.8247 0.8329 20 6 3.9999 4.7219 0.1423 21 1 5.0593 4.5469 0.0258 22 6 3.4192 5.8562 -0.4080 23 7 2.1530 6.1276 -0.1724 24 14 4.4347 6.9977 -1.4829 25 1 4.9737 8.1070 -0.6558 26 1 5.5592 6.2387 -2.0867 27 1 3.5783 7.5547 -2.5606 28 6 1.7944 3.6453 1.0988 29 1 -0.3633 0.6147 -0.8235 30 1 -0.3633 -1.0206 -0.1207 31 1 -0.3633 0.4057 0.9441 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5137 0.3272 -2.1542 35 1 0.6242 -0.9947 -4.2220 36 1 4.4251 -2.1901 -6.2731 37 1 3.7675 -1.2944 -7.6636 38 1 4.5980 -0.4204 -6.3541 39 1 1.7454 -3.6524 -7.1916 40 1 0.7503 -2.5342 -8.1546 41 1 2.5224 -2.3682 -8.1484 42 1 4.5822 0.4610 -4.9529 43 1 4.4783 1.7947 -2.8924 44 1 1.5174 1.6679 2.0648 45 1 4.2722 1.9895 1.2487 46 1 3.5846 2.8265 2.7052 47 1 1.7472 6.9204 -0.5566 48 1 1.4609 4.1217 2.0207 49 1 1.1612 3.8880 0.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957440090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:56 Heat of formation + Delta-G solvation = 69.707269 kcal Electronic energy + Delta-G solvation = -31593.345345 eV Core-core repulsion = 27524.832778 eV Total energy + Delta-G solvation = -4068.512567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02608 -41.39444 -39.53058 -37.99325 -36.80718 -36.33026 -33.98283 -32.31322 -32.00883 -31.03624 -29.91035 -29.11514 -27.98894 -26.27898 -25.72665 -24.46295 -23.81228 -23.34769 -21.99372 -20.79873 -19.57680 -18.60461 -18.57118 -18.17771 -17.78016 -17.04866 -16.78799 -16.64710 -16.31134 -15.85172 -15.69428 -15.59491 -15.20562 -14.88873 -14.53950 -14.48479 -14.34081 -14.23801 -14.11396 -13.79585 -13.54677 -13.37087 -13.29138 -13.21164 -13.08161 -12.86077 -12.76257 -12.59565 -12.56979 -12.47234 -12.22806 -11.93076 -11.78555 -11.66899 -11.18358 -11.13047 -10.72040 -10.55961 -10.06446 -9.95621 -9.27805 -8.90166 -8.42752 -7.70013 -4.91801 -0.01451 0.39304 1.38971 1.43059 1.46135 1.50032 1.79463 2.14948 2.24879 2.58318 2.84930 3.49389 3.57694 3.58731 3.76530 3.84032 3.88594 4.01108 4.12959 4.16204 4.29350 4.37026 4.43082 4.48234 4.48618 4.53189 4.60212 4.64937 4.69568 4.72219 4.84308 4.86329 4.92319 5.00471 5.01612 5.04173 5.14030 5.18726 5.24041 5.32373 5.35606 5.38050 5.46387 5.53665 5.63717 6.01782 6.07052 6.18708 6.24919 6.77857 6.96183 7.09392 7.76803 7.85932 8.85198 9.51549 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003513 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.772269 B = 7969.357887 C = 9414.285601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.594 5.594 4 C 0.506 3.494 5 O -0.471 6.471 6 C -0.154 4.154 7 C -0.078 4.078 8 C -0.173 4.173 9 C 0.159 3.841 10 N -0.556 5.556 11 C 0.052 3.948 12 C 0.498 3.502 13 C -0.164 4.164 14 O -0.565 6.565 15 C -0.156 4.156 16 C -0.065 4.065 17 C 0.118 3.882 18 C 0.101 3.899 19 N -0.606 5.606 20 C -0.163 4.163 21 H 0.061 0.939 22 C -0.060 4.060 23 N -0.953 5.953 24 Si 0.956 3.044 25 H -0.288 1.288 26 H -0.275 1.275 27 H -0.305 1.305 28 C 0.160 3.840 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.133 0.867 45 H 0.034 0.966 46 H 0.057 0.943 47 H 0.234 0.766 48 H 0.020 0.980 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -26.620 -12.231 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 N -0.329 5.329 4 C 0.292 3.708 5 O -0.342 6.342 6 C -0.158 4.158 7 C -0.096 4.096 8 C -0.193 4.193 9 C 0.063 3.937 10 N -0.278 5.278 11 C -0.088 4.088 12 C 0.292 3.708 13 C -0.223 4.223 14 O -0.444 6.444 15 C -0.176 4.176 16 C -0.084 4.084 17 C 0.013 3.987 18 C -0.026 4.026 19 N -0.331 5.331 20 C -0.291 4.291 21 H 0.079 0.921 22 C -0.251 4.251 23 N -0.604 5.604 24 Si 0.787 3.213 25 H -0.216 1.216 26 H -0.201 1.201 27 H -0.232 1.232 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.179 0.821 43 H 0.133 0.867 44 H 0.151 0.849 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.975 -25.646 -12.297 28.458 hybrid contribution 0.400 1.620 -0.283 1.692 sum 1.375 -24.026 -12.580 27.155 Atomic orbital electron populations 1.22308 0.95306 1.03098 1.02014 1.21881 0.94888 0.81076 1.04278 1.47478 1.65392 1.14251 1.05746 1.19085 0.79235 0.88165 0.84340 1.91420 1.43566 1.15140 1.84037 1.20163 0.97163 1.01058 0.97420 1.21696 0.97695 0.93746 0.96497 1.22191 0.99969 1.02797 0.94327 1.18172 0.95002 0.93115 0.87394 1.45706 1.12066 1.47347 1.22710 1.22509 0.82832 1.04692 0.98744 1.22071 0.82036 0.80648 0.86057 1.22070 1.06921 0.99044 0.94238 1.90501 1.29911 1.63066 1.60967 1.20925 0.99869 0.98712 0.98126 1.20955 0.96738 0.96843 0.93879 1.22579 0.97142 0.92411 0.86580 1.23058 0.96239 0.88185 0.95084 1.45461 1.03447 1.29551 1.54672 1.18650 0.89990 0.97356 1.23146 0.92125 1.25155 0.97072 0.99598 1.03302 1.69999 1.12705 1.27502 1.50232 0.85365 0.77714 0.79340 0.78846 1.21612 1.20078 1.23209 1.22117 0.87809 0.90789 0.95983 0.94084 0.88955 0.91754 0.89702 0.88566 0.83926 0.81515 0.89068 0.87038 0.89418 0.86359 0.88313 0.86652 0.82133 0.86738 0.84949 0.94783 0.92606 0.95725 0.96291 0.96029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.36 71.98 0.67 -2.97 16 2 C 0.10 2.47 5.62 86.38 0.49 2.96 16 3 N -0.59 -21.35 2.76 -800.29 -2.21 -23.55 16 4 C 0.51 22.26 6.82 86.71 0.59 22.85 16 5 O -0.47 -26.66 10.33 -3.98 -0.04 -26.71 16 6 C -0.15 -5.65 4.97 -20.08 -0.10 -5.75 16 7 C -0.08 -2.44 7.43 22.50 0.17 -2.27 16 8 C -0.17 -5.03 8.90 22.35 0.20 -4.83 16 9 C 0.16 4.00 6.46 38.36 0.25 4.25 16 10 N -0.56 -9.62 3.09 -654.55 -2.02 -11.64 16 11 C 0.05 0.35 9.76 127.77 1.25 1.60 16 12 C 0.50 8.96 7.66 87.66 0.67 9.63 16 13 C -0.16 -1.01 9.88 71.24 0.70 -0.31 16 14 O -0.56 -15.44 13.67 -3.02 -0.04 -15.48 16 15 C -0.16 -3.98 9.28 22.35 0.21 -3.77 16 16 C -0.06 -2.18 9.71 22.50 0.22 -1.96 16 17 C 0.12 4.48 4.87 45.55 0.22 4.71 16 18 C 0.10 4.32 8.26 83.18 0.69 5.01 16 19 N -0.61 -33.80 2.18 -737.94 -1.61 -35.41 16 20 C -0.16 -10.11 8.60 84.03 0.72 -9.39 16 21 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.06 -3.81 5.10 84.86 0.43 -3.38 16 23 N -0.95 -64.27 11.80 21.65 0.26 -64.01 16 24 Si 0.96 51.87 29.56 68.60 2.03 53.90 16 25 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 26 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.30 -16.85 7.11 99.48 0.71 -16.15 16 28 C 0.16 8.27 6.15 83.27 0.51 8.78 16 29 H 0.04 1.06 6.17 -2.39 -0.01 1.05 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.08 5.13 -2.39 -0.01 2.07 16 33 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 34 H 0.14 4.17 4.13 -2.91 -0.01 4.16 16 35 H 0.17 4.98 4.86 -33.63 -0.16 4.82 16 36 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.11 0.10 6.20 -2.39 -0.01 0.09 16 38 H 0.09 0.62 5.66 -2.38 -0.01 0.61 16 39 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.12 0.01 5.79 -2.39 -0.01 -0.01 16 42 H 0.16 2.88 5.88 -2.91 -0.02 2.87 16 43 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.13 3.76 8.10 -2.39 -0.02 3.74 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.23 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.02 1.30 6.66 -2.39 -0.02 1.28 16 Total: -1.00 -93.18 379.61 5.09 -88.09 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.83 Total: 9.64 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 7.89 Total: 25.16 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -5.58 Total: -134.60 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.08 Total: -42.19 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.03 Total: 53.90 kcal Total: -93.18 5.09 -88.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957440090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.796 kcal (2) G-P(sol) polarization free energy of solvation -93.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds