Wall clock time and date at job start Wed Apr 1 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47213 * 2 1 4 4 C 1.34780 * 120.00078 * 105.40416 * 3 2 1 5 5 O 1.21512 * 120.00067 * 186.81837 * 4 3 2 6 6 C 1.48162 * 119.99920 * 6.81885 * 4 3 2 7 7 C 1.39392 * 120.66015 * 325.78140 * 6 4 3 8 8 C 1.38863 * 118.60853 * 179.97438 * 7 6 4 9 9 O 1.35688 * 119.69319 * 180.11996 * 8 7 6 10 10 N 1.31833 * 120.60732 * 0.32673 * 8 7 6 11 11 C 1.32732 * 122.69214 * 359.50441 * 10 8 7 12 12 C 1.37463 * 120.23975 * 0.30685 * 11 10 8 13 13 C 1.50494 * 122.89275 * 180.17281 * 12 11 10 14 14 C 1.52759 * 110.57646 * 342.62644 * 13 12 11 15 15 C 1.53335 * 108.33187 * 50.77602 * 14 13 12 16 16 C 1.50756 * 117.45316 * 180.02562 * 11 10 8 17 17 C 1.46505 * 119.99993 * 285.40106 * 3 2 1 18 18 C 1.53949 * 113.74270 * 222.71718 * 17 3 2 19 19 N 1.47808 * 86.03519 * 222.08459 * 18 17 3 20 20 C 1.36939 * 134.45601 * 204.64398 * 19 18 17 21 21 H 1.08002 * 119.99907 * 184.81186 * 20 19 18 22 22 C 1.38804 * 120.00026 * 4.81412 * 20 19 18 23 23 N 1.31619 * 120.00200 * 5.07718 * 22 20 19 24 24 Si 1.86807 * 120.00157 * 185.08300 * 22 20 19 25 25 H 1.48494 * 109.47555 * 94.99320 * 24 22 20 26 26 H 1.48500 * 109.46827 * 214.99728 * 24 22 20 27 27 H 1.48503 * 109.46843 * 334.99432 * 24 22 20 28 28 C 1.47583 * 91.05313 * 24.54744 * 19 18 17 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46934 * 300.00257 * 1 2 3 31 31 H 1.09005 * 109.47195 * 59.99615 * 1 2 3 32 32 H 1.09003 * 109.46934 * 239.99743 * 2 1 3 33 33 H 1.08997 * 109.47466 * 120.00118 * 2 1 3 34 34 H 1.08006 * 120.69215 * 359.97438 * 7 6 4 35 35 H 0.96708 * 114.00161 * 89.99932 * 9 8 7 36 36 H 1.08997 * 109.25508 * 222.34157 * 13 12 11 37 37 H 1.09007 * 109.22513 * 102.88806 * 13 12 11 38 38 H 1.08995 * 109.69590 * 291.06887 * 14 13 12 39 39 H 1.08996 * 109.69547 * 170.47962 * 14 13 12 40 40 H 1.08993 * 109.68044 * 170.42112 * 15 14 13 41 41 H 1.08995 * 109.67377 * 49.87429 * 15 14 13 42 42 H 1.09000 * 109.25357 * 282.75618 * 16 11 10 43 43 H 1.08994 * 109.25199 * 42.22336 * 16 11 10 44 44 H 1.09001 * 112.94422 * 354.30724 * 17 3 2 45 45 H 1.09006 * 113.76686 * 336.34775 * 18 17 3 46 46 H 1.08994 * 113.76874 * 107.74586 * 18 17 3 47 47 H 0.96999 * 120.00466 * 180.02562 * 23 22 20 48 48 H 1.09001 * 113.77084 * 221.14626 * 28 19 18 49 49 H 1.09001 * 113.76700 * 89.75233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5353 1.9132 1.1253 5 8 2.8256 3.0926 1.1621 6 6 2.7496 1.0600 2.3175 7 6 1.8745 0.0154 2.6106 8 6 2.1161 -0.7578 3.7385 9 8 1.2797 -1.7818 4.0433 10 7 3.1484 -0.5034 4.5181 11 6 4.0067 0.4789 4.2734 12 6 3.8389 1.2872 3.1742 13 6 4.7771 2.4148 2.8380 14 6 5.6227 2.7902 4.0536 15 6 6.2523 1.5105 4.6168 16 6 5.1460 0.6642 5.2433 17 6 1.9448 2.1841 -1.2232 18 6 3.2112 3.0161 -1.4955 19 7 2.2887 4.1071 -1.8745 20 6 2.3875 5.2104 -2.6795 21 1 1.5705 5.9148 -2.7330 22 6 3.5376 5.4235 -3.4268 23 7 4.4914 4.5167 -3.4399 24 14 3.7318 6.9975 -4.4141 25 1 4.4924 7.9920 -3.6157 26 1 4.4664 6.7057 -5.6712 27 1 2.3908 7.5458 -4.7402 28 6 1.2182 3.5287 -1.0392 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.0263 -0.1884 1.9738 35 1 1.5334 -2.6276 3.6490 36 1 4.1978 3.2821 2.5214 37 1 5.4339 2.1050 2.0250 38 1 4.9911 3.2531 4.8116 39 1 6.4077 3.4847 3.7546 40 1 6.9912 1.7681 5.3755 41 1 6.7308 0.9521 3.8123 42 1 4.7770 1.1614 6.1403 43 1 5.5500 -0.3113 5.5135 44 1 1.6006 1.6137 -2.0859 45 1 3.7983 3.2278 -0.6019 46 1 3.8136 2.6413 -2.3229 47 1 5.2953 4.6657 -3.9618 48 1 0.2323 3.5625 -1.5030 49 1 1.2187 3.8913 -0.0113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957469150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:13 Heat of formation + Delta-G solvation = 45.765559 kcal Electronic energy + Delta-G solvation = -31732.343812 eV Core-core repulsion = 27662.793054 eV Total energy + Delta-G solvation = -4069.550758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.46073 -39.81791 -38.18841 -36.96816 -36.13799 -35.39850 -33.32244 -32.01569 -30.46449 -30.06724 -29.66282 -27.47912 -25.09813 -24.70278 -23.89433 -23.58813 -23.15456 -22.52712 -20.39071 -20.26545 -18.99712 -18.05376 -17.36911 -16.86025 -16.50455 -16.13037 -15.98297 -15.44501 -15.03643 -14.66774 -14.53165 -14.34842 -14.00735 -13.93439 -13.64076 -13.47395 -13.36925 -13.10471 -12.78590 -12.47771 -12.38843 -12.18669 -12.02364 -11.79849 -11.68327 -11.45134 -11.33640 -11.13549 -11.02947 -10.87933 -10.81160 -10.74987 -10.62867 -10.17170 -9.96906 -9.93249 -9.59193 -9.49580 -9.10831 -8.70989 -8.62667 -8.19423 -6.76052 -5.70541 -3.02768 0.63891 0.78722 2.78861 3.03956 3.35800 3.42722 3.47918 3.49234 3.53366 4.19207 4.34081 4.52424 4.60934 4.67592 4.78568 4.81357 4.82697 4.97123 5.06787 5.22110 5.26111 5.29960 5.35153 5.41352 5.46364 5.54334 5.54891 5.60869 5.63786 5.66117 5.72844 5.78445 5.81674 5.85150 5.95516 6.08647 6.12910 6.23733 6.25120 6.33760 6.47381 6.57102 6.63715 6.90704 7.23558 7.33363 7.54471 7.59698 7.66870 7.71328 8.04083 8.37781 9.09764 9.76505 10.66824 11.45317 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003460 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.740412 B = 8090.897981 C = 9810.883448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 N -0.589 5.589 4 C 0.552 3.448 5 O -0.495 6.495 6 C -0.068 4.068 7 C -0.179 4.179 8 C 0.303 3.697 9 O -0.480 6.480 10 N -0.497 5.497 11 C 0.151 3.849 12 C -0.077 4.077 13 C -0.100 4.100 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.065 4.065 17 C 0.091 3.909 18 C 0.149 3.851 19 N -0.602 5.602 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.398 0.602 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -15.323 14.771 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.055 4.055 3 N -0.322 5.322 4 C 0.339 3.661 5 O -0.369 6.369 6 C -0.079 4.079 7 C -0.200 4.200 8 C 0.122 3.878 9 O -0.286 6.286 10 N -0.217 5.217 11 C 0.015 3.985 12 C -0.079 4.079 13 C -0.137 4.137 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.103 4.103 17 C -0.012 4.012 18 C 0.023 3.977 19 N -0.328 5.328 20 C -0.344 4.344 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.183 0.817 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.680 -14.579 15.524 21.362 hybrid contribution -0.027 0.704 -1.486 1.645 sum -1.707 -13.875 14.037 19.811 Atomic orbital electron populations 1.22227 0.95567 1.02245 1.03202 1.22400 0.94836 0.83869 1.04385 1.48061 1.60029 1.13245 1.10856 1.18058 0.78582 0.87185 0.82287 1.90784 1.49543 1.15035 1.81588 1.20448 0.95443 0.95346 0.96624 1.22930 1.02524 0.96935 0.97640 1.18820 0.88567 0.91264 0.89148 1.84821 1.47540 1.19768 1.76476 1.66784 1.03567 1.20039 1.31273 1.20731 0.94255 0.89679 0.93799 1.20576 0.95772 0.97528 0.94061 1.20866 0.97020 0.97546 0.98313 1.21590 0.99367 0.97241 0.97527 1.21625 0.97027 0.96529 1.00755 1.20388 0.92019 1.01571 0.96307 1.24154 1.02390 0.90439 0.84212 1.22804 0.91463 0.84987 0.98404 1.45586 1.09670 1.27726 1.49801 1.18993 1.01200 0.98163 1.15994 0.90373 1.24750 0.96847 0.98567 1.00291 1.69819 1.08516 1.33722 1.44600 0.86111 0.77615 0.82863 0.79264 1.21696 1.21746 1.20602 1.22967 0.92700 0.90005 0.95817 0.91392 0.92215 0.91326 0.90574 0.88215 0.81655 0.74493 0.86374 0.90100 0.91560 0.90772 0.90789 0.91324 0.89676 0.89655 0.87640 0.93331 0.90631 0.93792 0.94569 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.24 37.16 0.34 -1.28 16 2 C 0.07 0.74 5.63 -4.05 -0.02 0.71 16 3 N -0.59 -9.08 2.77 -168.90 -0.47 -9.55 16 4 C 0.55 9.27 6.56 -12.18 -0.08 9.19 16 5 O -0.49 -10.11 9.76 5.36 0.05 -10.06 16 6 C -0.07 -0.95 5.54 -104.57 -0.58 -1.53 16 7 C -0.18 -2.11 7.47 -38.92 -0.29 -2.40 16 8 C 0.30 3.59 7.75 -17.32 -0.13 3.46 16 9 O -0.48 -4.58 13.56 -18.77 -0.25 -4.83 16 10 N -0.50 -6.46 10.18 -9.62 -0.10 -6.56 16 11 C 0.15 1.88 6.62 -82.46 -0.55 1.33 16 12 C -0.08 -1.04 5.77 -104.18 -0.60 -1.65 16 13 C -0.10 -1.37 4.91 -28.11 -0.14 -1.51 16 14 C -0.12 -1.27 5.99 -26.68 -0.16 -1.43 16 15 C -0.12 -1.07 5.97 -26.70 -0.16 -1.23 16 16 C -0.07 -0.62 5.91 -27.99 -0.17 -0.79 16 17 C 0.09 1.73 4.42 -70.15 -0.31 1.42 16 18 C 0.15 3.64 6.99 -2.84 -0.02 3.62 16 19 N -0.60 -16.03 3.70 -177.89 -0.66 -16.69 16 20 C -0.22 -6.24 10.69 -15.06 -0.16 -6.41 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.64 11.29 55.49 0.63 -27.01 16 24 Si 0.91 22.60 29.56 -169.99 -5.02 17.57 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.11 2.45 8.27 -2.97 -0.02 2.42 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.59 7.30 -51.93 -0.38 0.21 16 31 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.96 3.69 -52.31 -0.19 0.77 16 34 H 0.17 1.64 3.65 -52.48 -0.19 1.45 16 35 H 0.40 1.68 9.06 45.56 0.41 2.10 16 36 H 0.12 1.96 5.52 -51.93 -0.29 1.68 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.87 8.07 -51.93 -0.42 1.45 16 45 H 0.05 1.26 5.77 -51.93 -0.30 0.96 16 46 H 0.08 2.02 6.87 -51.93 -0.36 1.66 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.05 1.19 6.25 -51.93 -0.32 0.86 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -35.18 377.09 -9.51 -44.69 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.23 Total: 3.16 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -3.14 Total: 3.59 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.60 Total: -59.81 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.20 Total: -14.89 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.18 -9.51 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957469150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.453 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds