Wall clock time and date at job start Wed Apr 1 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47213 * 2 1 4 4 C 1.34780 * 120.00078 * 105.40416 * 3 2 1 5 5 O 1.21512 * 120.00067 * 186.81837 * 4 3 2 6 6 C 1.48162 * 119.99920 * 6.81885 * 4 3 2 7 7 C 1.39392 * 120.66015 * 325.78140 * 6 4 3 8 8 C 1.38863 * 118.60853 * 179.97438 * 7 6 4 9 9 O 1.35688 * 119.69319 * 180.11996 * 8 7 6 10 10 N 1.31833 * 120.60732 * 0.32673 * 8 7 6 11 11 C 1.32732 * 122.69214 * 359.50441 * 10 8 7 12 12 C 1.37463 * 120.23975 * 0.30685 * 11 10 8 13 13 C 1.50494 * 122.89275 * 180.17281 * 12 11 10 14 14 C 1.52759 * 110.57646 * 342.62644 * 13 12 11 15 15 C 1.53335 * 108.33187 * 50.77602 * 14 13 12 16 16 C 1.50756 * 117.45316 * 180.02562 * 11 10 8 17 17 C 1.46505 * 119.99993 * 285.40106 * 3 2 1 18 18 C 1.53949 * 113.74270 * 222.71718 * 17 3 2 19 19 N 1.47808 * 86.03519 * 222.08459 * 18 17 3 20 20 C 1.36939 * 134.45601 * 204.64398 * 19 18 17 21 21 H 1.08002 * 119.99907 * 184.81186 * 20 19 18 22 22 C 1.38804 * 120.00026 * 4.81412 * 20 19 18 23 23 N 1.31619 * 120.00200 * 5.07718 * 22 20 19 24 24 Si 1.86807 * 120.00157 * 185.08300 * 22 20 19 25 25 H 1.48494 * 109.47555 * 94.99320 * 24 22 20 26 26 H 1.48500 * 109.46827 * 214.99728 * 24 22 20 27 27 H 1.48503 * 109.46843 * 334.99432 * 24 22 20 28 28 C 1.47583 * 91.05313 * 24.54744 * 19 18 17 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46934 * 300.00257 * 1 2 3 31 31 H 1.09005 * 109.47195 * 59.99615 * 1 2 3 32 32 H 1.09003 * 109.46934 * 239.99743 * 2 1 3 33 33 H 1.08997 * 109.47466 * 120.00118 * 2 1 3 34 34 H 1.08006 * 120.69215 * 359.97438 * 7 6 4 35 35 H 0.96708 * 114.00161 * 89.99932 * 9 8 7 36 36 H 1.08997 * 109.25508 * 222.34157 * 13 12 11 37 37 H 1.09007 * 109.22513 * 102.88806 * 13 12 11 38 38 H 1.08995 * 109.69590 * 291.06887 * 14 13 12 39 39 H 1.08996 * 109.69547 * 170.47962 * 14 13 12 40 40 H 1.08993 * 109.68044 * 170.42112 * 15 14 13 41 41 H 1.08995 * 109.67377 * 49.87429 * 15 14 13 42 42 H 1.09000 * 109.25357 * 282.75618 * 16 11 10 43 43 H 1.08994 * 109.25199 * 42.22336 * 16 11 10 44 44 H 1.09001 * 112.94422 * 354.30724 * 17 3 2 45 45 H 1.09006 * 113.76686 * 336.34775 * 18 17 3 46 46 H 1.08994 * 113.76874 * 107.74586 * 18 17 3 47 47 H 0.96999 * 120.00466 * 180.02562 * 23 22 20 48 48 H 1.09001 * 113.77084 * 221.14626 * 28 19 18 49 49 H 1.09001 * 113.76700 * 89.75233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5353 1.9132 1.1253 5 8 2.8256 3.0926 1.1621 6 6 2.7496 1.0600 2.3175 7 6 1.8745 0.0154 2.6106 8 6 2.1161 -0.7578 3.7385 9 8 1.2797 -1.7818 4.0433 10 7 3.1484 -0.5034 4.5181 11 6 4.0067 0.4789 4.2734 12 6 3.8389 1.2872 3.1742 13 6 4.7771 2.4148 2.8380 14 6 5.6227 2.7902 4.0536 15 6 6.2523 1.5105 4.6168 16 6 5.1460 0.6642 5.2433 17 6 1.9448 2.1841 -1.2232 18 6 3.2112 3.0161 -1.4955 19 7 2.2887 4.1071 -1.8745 20 6 2.3875 5.2104 -2.6795 21 1 1.5705 5.9148 -2.7330 22 6 3.5376 5.4235 -3.4268 23 7 4.4914 4.5167 -3.4399 24 14 3.7318 6.9975 -4.4141 25 1 4.4924 7.9920 -3.6157 26 1 4.4664 6.7057 -5.6712 27 1 2.3908 7.5458 -4.7402 28 6 1.2182 3.5287 -1.0392 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.0263 -0.1884 1.9738 35 1 1.5334 -2.6276 3.6490 36 1 4.1978 3.2821 2.5214 37 1 5.4339 2.1050 2.0250 38 1 4.9911 3.2531 4.8116 39 1 6.4077 3.4847 3.7546 40 1 6.9912 1.7681 5.3755 41 1 6.7308 0.9521 3.8123 42 1 4.7770 1.1614 6.1403 43 1 5.5500 -0.3113 5.5135 44 1 1.6006 1.6137 -2.0859 45 1 3.7983 3.2278 -0.6019 46 1 3.8136 2.6413 -2.3229 47 1 5.2953 4.6657 -3.9618 48 1 0.2323 3.5625 -1.5030 49 1 1.2187 3.8913 -0.0113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957469150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:11 Heat of formation + Delta-G solvation = 19.813802 kcal Electronic energy + Delta-G solvation = -31733.469165 eV Core-core repulsion = 27662.793054 eV Total energy + Delta-G solvation = -4070.676111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.54427 -41.11791 -39.09342 -38.57246 -37.23410 -36.38772 -34.60324 -33.87870 -31.62919 -30.97322 -30.60436 -29.37551 -26.59691 -26.39633 -25.16641 -24.50744 -24.20564 -23.76691 -21.94132 -21.19860 -20.15766 -19.12989 -18.79777 -18.37194 -17.81431 -17.14995 -17.03984 -16.82999 -16.67116 -16.17492 -15.78923 -15.49010 -15.35338 -14.94438 -14.83483 -14.55026 -14.39829 -14.27676 -14.02250 -13.91275 -13.64083 -13.41523 -13.14143 -12.98669 -12.86879 -12.82094 -12.74446 -12.63964 -12.48699 -12.07979 -12.00272 -11.91123 -11.83415 -11.66380 -11.58919 -11.52648 -11.20867 -10.81854 -10.65412 -10.17336 -9.66115 -9.59288 -8.88264 -7.90470 -5.25493 -0.41355 -0.15064 1.42623 1.45783 1.54406 1.59029 1.80598 2.42884 2.47759 2.56016 3.16319 3.27451 3.41355 3.49149 3.63567 3.71398 3.79373 3.94434 3.96650 4.00911 4.11545 4.22066 4.31411 4.36341 4.40355 4.49093 4.52541 4.55402 4.57185 4.73357 4.74146 4.79783 4.88422 4.92666 4.98049 5.00004 5.02476 5.11916 5.17764 5.24913 5.26618 5.32669 5.39400 5.39980 5.46609 5.50630 5.81087 5.92023 6.36286 6.58765 6.82153 6.89794 7.07714 7.58672 8.55677 9.24956 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003460 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.740412 B = 8090.897981 C = 9810.883448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 N -0.587 5.587 4 C 0.548 3.452 5 O -0.541 6.541 6 C -0.081 4.081 7 C -0.171 4.171 8 C 0.312 3.688 9 O -0.480 6.480 10 N -0.509 5.509 11 C 0.152 3.848 12 C -0.094 4.094 13 C -0.096 4.096 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.064 4.064 17 C 0.128 3.872 18 C 0.148 3.852 19 N -0.630 5.630 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.980 3.020 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.265 1.265 28 C 0.114 3.886 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.187 0.813 35 H 0.423 0.577 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.025 0.975 46 H 0.046 0.954 47 H 0.248 0.752 48 H 0.054 0.946 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -17.585 15.954 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.059 4.059 3 N -0.319 5.319 4 C 0.336 3.664 5 O -0.419 6.419 6 C -0.091 4.091 7 C -0.192 4.192 8 C 0.131 3.869 9 O -0.291 6.291 10 N -0.229 5.229 11 C 0.017 3.983 12 C -0.097 4.097 13 C -0.133 4.133 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.101 4.101 17 C 0.024 3.976 18 C 0.022 3.978 19 N -0.357 5.357 20 C -0.364 4.364 21 H 0.098 0.902 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.219 1.219 26 H -0.215 1.215 27 H -0.190 1.190 28 C -0.012 4.012 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.203 0.797 35 H 0.285 0.715 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.820 -16.916 16.723 23.954 hybrid contribution 0.261 1.323 -1.772 2.226 sum -2.559 -15.593 14.952 21.754 Atomic orbital electron populations 1.22216 0.93813 1.04307 1.02473 1.22761 0.96168 0.80954 1.05997 1.48024 1.59838 1.14815 1.09174 1.18547 0.77639 0.86967 0.83234 1.90775 1.51218 1.17261 1.82635 1.20281 0.96862 0.96120 0.95883 1.23032 1.02341 0.95774 0.98015 1.18931 0.88009 0.91521 0.88448 1.84777 1.46968 1.20624 1.76686 1.66917 1.04084 1.20171 1.31685 1.21118 0.94829 0.88874 0.93463 1.20625 0.96043 0.98088 0.94960 1.20697 0.96885 0.96449 0.99288 1.21587 0.99057 0.98600 0.96235 1.21597 0.97192 0.95036 1.01265 1.20503 0.91178 1.02603 0.95850 1.23442 0.97744 0.90114 0.86289 1.22613 0.92927 0.86126 0.96170 1.45976 1.11713 1.27808 1.50166 1.19390 1.01514 0.99205 1.16305 0.90219 1.25623 0.96582 1.01801 1.01721 1.70019 1.08814 1.35456 1.45511 0.85046 0.77996 0.78743 0.77465 1.21913 1.21494 1.18976 1.23000 0.92702 0.91132 0.94384 0.87897 0.92749 0.92288 0.89055 0.86588 0.79663 0.71509 0.90047 0.91745 0.91343 0.90542 0.88108 0.91576 0.88584 0.88097 0.85434 0.95727 0.93585 0.94257 0.92744 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.24 71.98 0.67 -1.95 16 2 C 0.06 1.19 5.63 86.38 0.49 1.68 16 3 N -0.59 -17.98 2.77 -806.56 -2.24 -20.22 16 4 C 0.55 19.04 6.56 86.88 0.57 19.61 16 5 O -0.54 -23.78 9.76 -3.75 -0.04 -23.82 16 6 C -0.08 -2.28 5.54 -19.83 -0.11 -2.39 16 7 C -0.17 -3.68 7.47 22.70 0.17 -3.51 16 8 C 0.31 6.56 7.75 84.84 0.66 7.22 16 9 O -0.48 -7.39 13.56 -90.07 -1.22 -8.61 16 10 N -0.51 -12.08 10.18 -297.41 -3.03 -15.10 16 11 C 0.15 3.60 6.62 42.26 0.28 3.88 16 12 C -0.09 -2.61 5.77 -19.58 -0.11 -2.72 16 13 C -0.10 -2.82 4.91 29.70 0.15 -2.67 16 14 C -0.12 -2.54 5.99 30.63 0.18 -2.35 16 15 C -0.11 -1.82 5.97 30.62 0.18 -1.63 16 16 C -0.06 -1.09 5.91 29.78 0.18 -0.91 16 17 C 0.13 4.93 4.42 46.75 0.21 5.13 16 18 C 0.15 7.59 6.99 86.44 0.60 8.19 16 19 N -0.63 -34.83 3.70 -716.73 -2.65 -37.48 16 20 C -0.24 -14.04 10.69 84.03 0.90 -13.14 16 21 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.95 -59.24 11.29 21.65 0.24 -59.00 16 24 Si 0.98 47.44 29.56 68.60 2.03 49.46 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.11 5.07 8.27 86.48 0.72 5.79 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.92 7.30 -2.39 -0.02 0.90 16 31 H 0.06 1.06 8.07 -2.38 -0.02 1.04 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.12 1.90 3.69 -2.75 -0.01 1.89 16 34 H 0.19 3.12 3.65 -2.91 -0.01 3.11 16 35 H 0.42 1.80 9.06 -74.05 -0.67 1.13 16 36 H 0.08 3.02 5.52 -2.39 -0.01 3.00 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.13 4.38 8.07 -2.39 -0.02 4.36 16 45 H 0.03 1.39 5.77 -2.38 -0.01 1.38 16 46 H 0.05 2.61 6.87 -2.39 -0.02 2.59 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 1.82 6.25 -2.39 -0.01 1.81 16 Total: -1.00 -80.74 377.09 -0.39 -81.13 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.33 Total: 16.76 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.18 Total: 16.88 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -7.67 Total: -131.80 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.26 Total: -32.43 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.74 -0.39 -81.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957469150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.944 kcal (2) G-P(sol) polarization free energy of solvation -80.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds