Wall clock time and date at job start Wed Apr 1 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47130 * 2 1 4 4 C 1.35683 * 117.00448 * 180.02562 * 3 2 1 5 5 C 1.38889 * 119.62587 * 180.27641 * 4 3 2 6 6 C 1.39574 * 118.94656 * 180.22878 * 5 4 3 7 7 C 1.48165 * 120.89138 * 179.78126 * 6 5 4 8 8 O 1.21510 * 120.00095 * 359.71151 * 7 6 5 9 9 N 1.34776 * 119.99596 * 179.71570 * 7 6 5 10 10 C 1.46499 * 119.99661 * 179.97438 * 9 7 6 11 11 C 1.53957 * 113.58030 * 205.00293 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 14 14 C 1.53949 * 86.78077 * 209.38575 * 13 12 11 15 15 N 1.46498 * 113.58269 * 139.33921 * 14 13 12 16 16 C 1.36938 * 119.99858 * 107.27989 * 15 14 13 17 17 H 1.07998 * 120.00416 * 359.97438 * 16 15 14 18 18 C 1.38820 * 119.99593 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99783 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00016 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47175 * 90.00131 * 20 18 16 22 22 H 1.48505 * 109.46870 * 210.00185 * 20 18 16 23 23 H 1.48502 * 109.47261 * 329.99845 * 20 18 16 24 24 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 25 25 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 26 26 C 1.39966 * 118.21496 * 359.50327 * 6 5 4 27 27 C 1.37975 * 119.13481 * 0.25269 * 26 6 5 28 28 N 1.31909 * 120.97803 * 359.97438 * 27 26 6 29 29 H 1.08994 * 109.46898 * 60.00255 * 1 2 3 30 30 H 1.09000 * 109.46661 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46887 * 300.00101 * 1 2 3 32 32 H 1.08996 * 109.47587 * 240.00127 * 2 1 3 33 33 H 1.08998 * 109.47484 * 119.99307 * 2 1 3 34 34 H 1.07997 * 120.52616 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00391 * 359.97438 * 9 7 6 36 36 H 1.09001 * 112.88003 * 336.14559 * 10 9 7 37 37 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 38 38 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 39 39 H 1.09006 * 113.66074 * 323.85230 * 13 12 11 40 40 H 1.08994 * 113.66448 * 94.91195 * 13 12 11 41 41 H 1.09009 * 113.57633 * 270.12923 * 14 13 12 42 42 H 0.97003 * 119.99770 * 287.27692 * 15 14 13 43 43 H 0.97002 * 119.99808 * 180.02562 * 19 18 16 44 44 H 1.08990 * 113.66878 * 265.09053 * 24 12 11 45 45 H 1.09000 * 113.66430 * 36.05678 * 24 12 11 46 46 H 1.09001 * 113.66026 * 89.57323 * 25 12 11 47 47 H 1.08998 * 113.65932 * 220.62442 * 25 12 11 48 48 H 1.08005 * 120.43056 * 180.23196 * 26 6 5 49 49 H 1.08003 * 119.51276 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5252 -0.0005 5 6 3.8739 2.8121 0.0053 6 6 5.2596 2.9787 -0.0003 7 6 5.8631 4.3319 0.0007 8 8 5.1496 5.3154 0.0011 9 7 7.2036 4.4718 0.0011 10 6 7.8004 5.8097 0.0015 11 6 9.2193 5.8514 -0.5945 12 6 9.5727 6.8180 0.5365 13 6 9.6446 8.3260 0.2942 14 6 10.6952 8.3690 1.4187 15 7 11.8173 9.2681 1.1385 16 6 11.9257 10.4573 1.8088 17 1 11.1838 10.7325 2.5438 18 6 12.9887 11.3095 1.5428 19 7 13.0927 12.4527 2.1867 20 14 14.2716 10.8338 0.2711 21 1 13.8570 11.3378 -1.0628 22 1 15.5802 11.4305 0.6410 23 1 14.3975 9.3548 0.2243 24 6 10.9933 6.8932 1.0973 25 6 8.4336 6.2012 1.3490 26 6 6.0638 1.8331 -0.0008 27 6 5.4634 0.5909 -0.0011 28 7 4.1497 0.4717 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.2182 3.6702 0.0106 35 1 7.7732 3.6867 0.0011 36 1 7.1343 6.5710 -0.4047 37 1 9.2644 6.3027 -1.5856 38 1 9.7461 4.8989 -0.5366 39 1 10.0413 8.5933 -0.6853 40 1 8.7219 8.8527 0.5373 41 1 10.2672 8.5215 2.4096 42 1 12.4835 9.0210 0.4781 43 1 13.8353 13.0484 2.0006 44 1 11.1478 6.2753 1.9817 45 1 11.7688 6.7562 0.3437 46 1 8.7398 5.3470 1.9531 47 1 7.8512 6.9318 1.9103 48 1 7.1404 1.9205 -0.0012 49 1 6.0782 -0.2972 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964992306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:11 Heat of formation + Delta-G solvation = 21.605099 kcal Electronic energy + Delta-G solvation = -28581.527413 eV Core-core repulsion = 24510.928979 eV Total energy + Delta-G solvation = -4070.598434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.35210 -40.60269 -39.42811 -38.23768 -36.09984 -33.99548 -33.12143 -32.62319 -32.00286 -30.40907 -30.09277 -25.93569 -25.88062 -25.33743 -24.21039 -23.83171 -23.37405 -22.07541 -20.97904 -20.29983 -19.19065 -17.98984 -17.73000 -17.32432 -16.91482 -16.78324 -16.27505 -16.04627 -15.52622 -15.09292 -14.97390 -14.88450 -14.40401 -14.31854 -14.28035 -14.03652 -13.60119 -13.10897 -12.88746 -12.75814 -12.70130 -12.65876 -12.51014 -12.10612 -12.01708 -11.80342 -11.68321 -11.39890 -11.26614 -11.03387 -10.83897 -10.62473 -10.42612 -10.24110 -10.16848 -10.02309 -9.85085 -9.73281 -9.50411 -9.25355 -9.05207 -8.89057 -7.26563 -5.78045 -3.13432 0.21635 0.61945 2.36767 2.49289 2.85152 3.34642 3.36115 3.38842 3.44241 3.75080 4.08669 4.38827 4.40649 4.50021 4.52483 4.52841 4.53316 4.57813 4.61382 4.66428 4.76739 4.88507 5.13144 5.18810 5.21922 5.25104 5.34429 5.36250 5.46393 5.52233 5.55690 5.57860 5.60366 5.74275 5.77860 5.78597 5.82369 5.92240 6.03741 6.11834 6.20546 6.26716 6.37298 6.54627 6.73824 6.76897 6.98317 7.13477 7.26932 7.80485 7.99155 8.41851 9.19845 9.92449 10.12427 11.40291 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.001533 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.523132 B =18255.569536 C =18638.085456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.304 6.304 4 C 0.323 3.677 5 C -0.133 4.133 6 C -0.051 4.051 7 C 0.557 3.443 8 O -0.523 6.523 9 N -0.708 5.708 10 C 0.122 3.878 11 C -0.130 4.130 12 C -0.102 4.102 13 C -0.142 4.142 14 C 0.174 3.826 15 N -0.738 5.738 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.183 4.183 27 C 0.139 3.861 28 N -0.528 5.528 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.400 0.600 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.142 0.858 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -30.388 -6.349 36.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.211 6.211 4 C 0.143 3.857 5 C -0.154 4.154 6 C -0.062 4.062 7 C 0.343 3.657 8 O -0.399 6.399 9 N -0.359 5.359 10 C 0.018 3.982 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.183 4.183 14 C 0.063 3.937 15 N -0.377 5.377 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.177 4.177 25 C -0.163 4.163 26 C -0.204 4.204 27 C -0.016 4.016 28 N -0.253 5.253 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.236 0.764 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.160 0.840 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.405 -30.049 -6.176 36.844 hybrid contribution 1.742 -0.124 -0.933 1.980 sum -18.663 -30.174 -7.109 36.184 Atomic orbital electron populations 1.21835 0.92807 1.03018 1.03532 1.22651 0.94937 0.80714 1.02587 1.86269 1.16365 1.30995 1.87478 1.19648 0.84339 0.89408 0.92260 1.21161 0.94653 0.96527 1.03081 1.20178 0.93343 0.93923 0.98715 1.18115 0.82751 0.87970 0.76870 1.90815 1.61066 1.39395 1.48612 1.45953 1.05924 1.09791 1.74197 1.22718 0.93662 0.83765 0.98008 1.23195 0.94289 1.00090 0.99274 1.22085 0.95729 0.96317 0.96150 1.23577 1.01340 0.91312 1.02048 1.21527 0.88364 0.87618 0.96211 1.42768 1.26997 1.20355 1.47614 1.19159 1.08389 0.93160 1.17051 0.89130 1.24693 0.98461 0.96496 0.99464 1.69705 1.32836 1.10924 1.44603 0.86550 0.82101 0.77726 0.82151 1.21078 1.21725 1.20347 1.23287 0.94696 0.99570 1.00190 1.23156 0.96340 1.00597 0.96192 1.22155 1.01231 0.92698 1.04334 1.22385 0.88967 0.97264 0.93021 1.67225 1.06873 1.33340 1.17849 0.91528 0.90169 0.91500 0.91495 0.91477 0.82700 0.76410 0.86443 0.90640 0.89811 0.90165 0.91972 0.89920 0.80512 0.93056 0.91893 0.90414 0.89721 0.90559 0.83999 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.07 0.43 6.03 37.16 0.22 0.66 16 3 O -0.30 -2.82 10.11 -18.75 -0.19 -3.01 16 4 C 0.32 3.09 7.49 -17.16 -0.13 2.97 16 5 C -0.13 -1.31 9.61 -38.84 -0.37 -1.68 16 6 C -0.05 -0.46 5.91 -104.67 -0.62 -1.08 16 7 C 0.56 6.06 7.80 -12.18 -0.10 5.97 16 8 O -0.52 -7.74 16.04 5.36 0.09 -7.65 16 9 N -0.71 -6.11 5.31 -53.69 -0.29 -6.40 16 10 C 0.12 1.28 4.24 -66.95 -0.28 0.99 16 11 C -0.13 -1.29 7.59 -26.28 -0.20 -1.49 16 12 C -0.10 -1.27 1.11 -154.71 -0.17 -1.44 16 13 C -0.14 -2.26 7.64 -26.28 -0.20 -2.46 16 14 C 0.17 3.23 4.48 -66.95 -0.30 2.93 16 15 N -0.74 -17.20 5.20 -52.47 -0.27 -17.47 16 16 C -0.25 -6.95 10.45 -15.06 -0.16 -7.11 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 20 Si 0.88 21.94 27.73 -169.99 -4.71 17.22 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 24 C -0.14 -2.01 7.59 -26.28 -0.20 -2.21 16 25 C -0.12 -1.39 7.64 -26.28 -0.20 -1.59 16 26 C -0.18 -1.11 9.61 -39.03 -0.38 -1.49 16 27 C 0.14 0.86 11.17 -17.61 -0.20 0.66 16 28 N -0.53 -4.53 9.18 -13.38 -0.12 -4.65 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.16 1.58 7.74 -52.49 -0.41 1.18 16 35 H 0.40 2.23 6.86 -40.82 -0.28 1.95 16 36 H 0.12 1.46 7.47 -51.93 -0.39 1.07 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.59 8.10 -51.92 -0.42 1.17 16 42 H 0.36 8.26 5.79 -40.82 -0.24 8.02 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.14 0.43 6.53 -52.48 -0.34 0.08 16 49 H 0.17 0.48 8.06 -52.48 -0.42 0.05 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -34.45 405.06 -9.19 -43.64 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.58 Total: 7.37 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.99 Total: -6.66 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.09 Total: -57.01 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.10 Total: -10.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.45 -9.19 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964992306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.245 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds