Wall clock time and date at job start Wed Apr 1 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47172 * 2 1 4 4 C 1.35685 * 116.99767 * 180.02562 * 3 2 1 5 5 C 1.38899 * 119.61791 * 180.02562 * 4 3 2 6 6 C 1.39577 * 118.94212 * 179.97438 * 5 4 3 7 7 C 1.48165 * 120.88610 * 179.97438 * 6 5 4 8 8 O 1.21506 * 120.00131 * 353.94114 * 7 6 5 9 9 N 1.34781 * 119.99444 * 173.93670 * 7 6 5 10 10 C 1.47664 * 134.45211 * 174.56044 * 9 7 6 11 11 C 1.53442 * 85.97693 * 155.70815 * 10 9 7 12 12 C 1.47670 * 134.45405 * 354.55228 * 9 7 6 13 13 C 1.52629 * 113.71363 * 268.85428 * 11 10 9 14 14 C 1.53181 * 109.35414 * 171.27064 * 13 11 10 15 15 C 1.52677 * 109.42852 * 58.92357 * 14 13 11 16 16 N 1.46894 * 109.34405 * 303.77230 * 15 14 13 17 17 C 1.36943 * 120.68577 * 235.30520 * 16 15 14 18 18 H 1.07999 * 119.99253 * 144.39296 * 17 16 15 19 19 C 1.38812 * 120.00246 * 324.39816 * 17 16 15 20 20 N 1.31620 * 120.00004 * 335.76123 * 19 17 16 21 21 Si 1.86793 * 119.99964 * 155.76570 * 19 17 16 22 22 H 1.48495 * 109.47420 * 89.99732 * 21 19 17 23 23 H 1.48498 * 109.47241 * 209.99859 * 21 19 17 24 24 H 1.48504 * 109.47304 * 329.99783 * 21 19 17 25 25 C 1.47116 * 118.62243 * 55.03972 * 16 15 14 26 26 C 1.39966 * 118.21632 * 0.27312 * 6 5 4 27 27 C 1.37978 * 119.13343 * 359.47341 * 26 6 5 28 28 N 1.31911 * 120.97793 * 0.54152 * 27 26 6 29 29 H 1.08997 * 109.46761 * 60.00493 * 1 2 3 30 30 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47077 * 300.00234 * 1 2 3 32 32 H 1.08998 * 109.47077 * 239.99766 * 2 1 3 33 33 H 1.09010 * 109.46998 * 119.99793 * 2 1 3 34 34 H 1.07997 * 120.52782 * 359.97187 * 5 4 3 35 35 H 1.09004 * 113.79772 * 41.44331 * 10 9 7 36 36 H 1.09005 * 113.79338 * 269.97080 * 10 9 7 37 37 H 1.08997 * 113.78991 * 90.02594 * 12 9 7 38 38 H 1.08995 * 113.79837 * 318.55580 * 12 9 7 39 39 H 1.09006 * 109.48990 * 291.22748 * 13 11 10 40 40 H 1.08997 * 109.49390 * 51.30099 * 13 11 10 41 41 H 1.08998 * 109.49343 * 179.01840 * 14 13 11 42 42 H 1.08997 * 109.49415 * 299.09489 * 14 13 11 43 43 H 1.08993 * 109.44078 * 183.78324 * 15 14 13 44 44 H 1.09003 * 109.36282 * 63.71040 * 15 14 13 45 45 H 0.96998 * 119.99780 * 357.00610 * 20 19 17 46 46 H 1.09002 * 109.63900 * 68.57313 * 25 16 15 47 47 H 1.08995 * 109.64002 * 189.18831 * 25 16 15 48 48 H 1.08000 * 120.43282 * 179.72981 * 26 6 5 49 49 H 1.08001 * 119.50669 * 180.27720 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8739 2.8120 0.0000 6 6 5.2597 2.9785 0.0000 7 6 5.8632 4.3317 -0.0001 8 8 5.1551 5.3127 -0.1112 9 7 7.1978 4.4742 0.1232 10 6 8.1251 5.6218 0.0630 11 6 9.0667 4.7675 0.9221 12 6 8.3184 3.5455 0.3727 13 6 8.8845 4.9740 2.4234 14 6 9.7068 3.9285 3.1831 15 6 11.1788 4.0647 2.8012 16 7 11.3168 3.9418 1.3439 17 6 12.1576 3.0090 0.7978 18 1 11.8882 2.5126 -0.1228 19 6 13.3558 2.7013 1.4274 20 7 13.9198 3.5765 2.2326 21 14 14.1679 1.0453 1.1319 22 1 15.0899 1.1460 -0.0278 23 1 14.9340 0.6470 2.3401 24 1 13.1255 0.0263 0.8485 25 6 10.5285 4.8375 0.4833 26 6 6.0639 1.8329 -0.0065 27 6 5.4634 0.5907 -0.0014 28 7 4.1497 0.4716 -0.0014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.2183 3.6702 0.0003 35 1 7.7552 6.5133 0.5695 36 1 8.5071 5.8266 -0.9372 37 1 8.7577 3.1325 -0.5353 38 1 8.1021 2.7873 1.1253 39 1 9.2244 5.9729 2.6970 40 1 7.8309 4.8648 2.6803 41 1 9.5922 4.0848 4.2557 42 1 9.3569 2.9300 2.9212 43 1 11.7545 3.2785 3.2895 44 1 11.5464 5.0396 3.1212 45 1 13.5211 4.4527 2.3523 46 1 10.8934 5.8595 0.5866 47 1 10.6151 4.5177 -0.5550 48 1 7.1403 1.9202 -0.0111 49 1 6.0782 -0.2973 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982002206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:26 Heat of formation + Delta-G solvation = 22.882662 kcal Electronic energy + Delta-G solvation = -30525.309823 eV Core-core repulsion = 26454.766788 eV Total energy + Delta-G solvation = -4070.543035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.23519 -40.48117 -38.68457 -37.86409 -36.11481 -33.13546 -32.72782 -32.40494 -30.76982 -30.30472 -29.78721 -26.56004 -26.42332 -25.24021 -24.56252 -23.50850 -22.84961 -22.39952 -20.91027 -19.98706 -18.34478 -18.22861 -17.40984 -17.35437 -16.59200 -16.35120 -15.95136 -15.79872 -15.56430 -14.56977 -14.49736 -14.38963 -14.17455 -14.11320 -13.90188 -13.68774 -13.59022 -13.30830 -12.98930 -12.88052 -12.64010 -12.47978 -12.24385 -12.03617 -11.89730 -11.77914 -11.50798 -11.18631 -11.07946 -10.79413 -10.52152 -10.38163 -10.23862 -10.15575 -10.14874 -10.09020 -9.85102 -9.67005 -9.32422 -8.79276 -8.70128 -8.39921 -6.88491 -6.15778 -3.39279 0.49547 0.90026 2.49464 2.75352 2.89898 3.43757 3.47266 3.61694 3.62234 3.99574 4.14993 4.40464 4.55599 4.65617 4.67625 4.73555 4.75515 4.82503 4.94889 5.04421 5.11729 5.23978 5.28068 5.39900 5.42627 5.44634 5.48649 5.50085 5.55926 5.56632 5.63699 5.67184 5.70745 5.77474 5.85268 5.87392 6.06102 6.12033 6.21924 6.35530 6.39975 6.51464 6.60086 6.64078 6.96095 6.96894 7.09749 7.52792 7.61280 7.98320 8.00959 8.52552 9.03463 9.75451 10.23878 11.12772 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002608 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.962522 B =10733.862415 C =11960.957552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.306 6.306 4 C 0.318 3.682 5 C -0.136 4.136 6 C -0.046 4.046 7 C 0.577 3.423 8 O -0.537 6.537 9 N -0.631 5.631 10 C 0.117 3.883 11 C -0.101 4.101 12 C 0.113 3.887 13 C -0.084 4.084 14 C -0.136 4.136 15 C 0.153 3.847 16 N -0.593 5.593 17 C -0.357 4.357 18 H 0.052 0.948 19 C -0.017 4.017 20 N -0.909 5.909 21 Si 1.067 2.933 22 H -0.293 1.293 23 H -0.286 1.286 24 H -0.291 1.291 25 C 0.162 3.838 26 C -0.188 4.188 27 C 0.138 3.862 28 N -0.528 5.528 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.017 0.983 45 H 0.270 0.730 46 H 0.023 0.977 47 H 0.060 0.940 48 H 0.155 0.845 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.261 -4.671 -3.275 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.139 3.861 5 C -0.158 4.158 6 C -0.056 4.056 7 C 0.366 3.634 8 O -0.415 6.415 9 N -0.365 5.365 10 C -0.006 4.006 11 C -0.103 4.103 12 C -0.009 4.009 13 C -0.122 4.122 14 C -0.175 4.175 15 C 0.027 3.973 16 N -0.317 5.317 17 C -0.486 4.486 18 H 0.069 0.931 19 C -0.221 4.221 20 N -0.547 5.547 21 Si 0.897 3.103 22 H -0.221 1.221 23 H -0.212 1.212 24 H -0.218 1.218 25 C 0.036 3.964 26 C -0.209 4.209 27 C -0.017 4.017 28 N -0.253 5.253 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.079 0.921 48 H 0.172 0.828 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.124 -5.774 -2.942 20.192 hybrid contribution -0.917 1.463 -0.524 1.805 sum -20.041 -4.311 -3.466 20.791 Atomic orbital electron populations 1.21827 0.92962 1.02913 1.03390 1.22625 0.94768 0.80922 1.02599 1.86246 1.16505 1.30802 1.87784 1.19594 0.84218 0.89431 0.92891 1.21098 0.94510 0.96372 1.03779 1.20102 0.93058 0.93890 0.98571 1.17719 0.80846 0.87893 0.76910 1.90765 1.60304 1.39869 1.50598 1.50012 1.03698 1.13180 1.69617 1.23313 0.85883 0.91039 1.00323 1.22610 0.97549 0.94093 0.96089 1.23471 0.82384 0.94689 1.00329 1.21119 0.99067 0.99760 0.92205 1.21999 0.98979 0.98433 0.98122 1.20793 0.92040 0.99172 0.85312 1.44031 1.48698 1.39031 0.99940 1.19812 1.00053 1.17022 1.11682 0.93069 1.25979 0.93176 1.04326 0.98619 1.70756 1.38034 1.06278 1.39668 0.83508 0.75505 0.75188 0.76138 1.22072 1.21224 1.21753 1.20817 0.86771 0.93984 0.94873 1.22764 1.02670 0.92555 1.02883 1.22439 0.88823 0.97425 0.93025 1.67204 1.06940 1.33266 1.17846 0.91613 0.90246 0.91600 0.91547 0.91520 0.83006 0.90023 0.89319 0.88885 0.89486 0.91899 0.93051 0.92838 0.92375 0.91047 0.96484 0.91886 0.95873 0.92135 0.82773 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.07 0.58 6.03 37.16 0.22 0.81 16 3 O -0.31 -3.60 10.11 -18.76 -0.19 -3.79 16 4 C 0.32 4.04 7.49 -17.16 -0.13 3.91 16 5 C -0.14 -1.81 9.61 -38.84 -0.37 -2.18 16 6 C -0.05 -0.62 5.91 -104.67 -0.62 -1.23 16 7 C 0.58 8.89 8.01 -12.18 -0.10 8.79 16 8 O -0.54 -9.81 17.19 5.36 0.09 -9.72 16 9 N -0.63 -8.87 3.44 -181.47 -0.62 -9.49 16 10 C 0.12 1.56 7.98 -3.18 -0.03 1.54 16 11 C -0.10 -1.49 0.87 -154.44 -0.13 -1.62 16 12 C 0.11 1.53 5.23 -3.17 -0.02 1.51 16 13 C -0.08 -1.26 5.02 -26.83 -0.13 -1.39 16 14 C -0.14 -2.28 5.99 -26.80 -0.16 -2.44 16 15 C 0.15 3.21 4.71 -3.99 -0.02 3.19 16 16 N -0.59 -13.14 2.75 -172.75 -0.47 -13.62 16 17 C -0.36 -9.01 9.42 -15.06 -0.14 -9.15 16 18 H 0.05 1.30 7.94 -52.49 -0.42 0.88 16 19 C -0.02 -0.45 4.66 -17.43 -0.08 -0.54 16 20 N -0.91 -25.81 12.77 55.49 0.71 -25.10 16 21 Si 1.07 23.73 29.98 -169.99 -5.10 18.63 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 25 C 0.16 2.94 5.71 -3.81 -0.02 2.92 16 26 C -0.19 -2.18 9.17 -39.03 -0.36 -2.54 16 27 C 0.14 1.48 11.17 -17.61 -0.20 1.28 16 28 N -0.53 -6.40 9.18 -13.38 -0.12 -6.52 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 34 H 0.15 2.00 7.75 -52.49 -0.41 1.59 16 35 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 37 H 0.09 1.22 7.91 -51.93 -0.41 0.80 16 38 H 0.09 1.16 6.12 -51.93 -0.32 0.84 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.98 7.37 -51.93 -0.38 0.60 16 43 H 0.07 1.71 6.77 -51.93 -0.35 1.36 16 44 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 45 H 0.27 7.74 6.92 -40.82 -0.28 7.46 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 48 H 0.15 1.66 4.24 -52.49 -0.22 1.44 16 49 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -30.82 392.02 -9.16 -39.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.46 Total: 1.46 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.90 Total: 2.27 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.51 Total: -54.74 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.10 Total: -13.51 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.10 Total: 18.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.82 -9.16 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982002206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.862 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds