Wall clock time and date at job start Wed Apr 1 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47172 * 2 1 4 4 C 1.35685 * 116.99767 * 180.02562 * 3 2 1 5 5 C 1.38899 * 119.61791 * 180.02562 * 4 3 2 6 6 C 1.39577 * 118.94212 * 179.97438 * 5 4 3 7 7 C 1.48165 * 120.88610 * 179.97438 * 6 5 4 8 8 O 1.21506 * 120.00131 * 353.94114 * 7 6 5 9 9 N 1.34781 * 119.99444 * 173.93670 * 7 6 5 10 10 C 1.47664 * 134.45211 * 174.56044 * 9 7 6 11 11 C 1.53442 * 85.97693 * 155.70815 * 10 9 7 12 12 C 1.47670 * 134.45405 * 354.55228 * 9 7 6 13 13 C 1.52629 * 113.71363 * 268.85428 * 11 10 9 14 14 C 1.53181 * 109.35414 * 171.27064 * 13 11 10 15 15 C 1.52677 * 109.42852 * 58.92357 * 14 13 11 16 16 N 1.46894 * 109.34405 * 303.77230 * 15 14 13 17 17 C 1.36943 * 120.68577 * 235.30520 * 16 15 14 18 18 H 1.07999 * 119.99253 * 144.39296 * 17 16 15 19 19 C 1.38812 * 120.00246 * 324.39816 * 17 16 15 20 20 N 1.31620 * 120.00004 * 335.76123 * 19 17 16 21 21 Si 1.86793 * 119.99964 * 155.76570 * 19 17 16 22 22 H 1.48495 * 109.47420 * 89.99732 * 21 19 17 23 23 H 1.48498 * 109.47241 * 209.99859 * 21 19 17 24 24 H 1.48504 * 109.47304 * 329.99783 * 21 19 17 25 25 C 1.47116 * 118.62243 * 55.03972 * 16 15 14 26 26 C 1.39966 * 118.21632 * 0.27312 * 6 5 4 27 27 C 1.37978 * 119.13343 * 359.47341 * 26 6 5 28 28 N 1.31911 * 120.97793 * 0.54152 * 27 26 6 29 29 H 1.08997 * 109.46761 * 60.00493 * 1 2 3 30 30 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47077 * 300.00234 * 1 2 3 32 32 H 1.08998 * 109.47077 * 239.99766 * 2 1 3 33 33 H 1.09010 * 109.46998 * 119.99793 * 2 1 3 34 34 H 1.07997 * 120.52782 * 359.97187 * 5 4 3 35 35 H 1.09004 * 113.79772 * 41.44331 * 10 9 7 36 36 H 1.09005 * 113.79338 * 269.97080 * 10 9 7 37 37 H 1.08997 * 113.78991 * 90.02594 * 12 9 7 38 38 H 1.08995 * 113.79837 * 318.55580 * 12 9 7 39 39 H 1.09006 * 109.48990 * 291.22748 * 13 11 10 40 40 H 1.08997 * 109.49390 * 51.30099 * 13 11 10 41 41 H 1.08998 * 109.49343 * 179.01840 * 14 13 11 42 42 H 1.08997 * 109.49415 * 299.09489 * 14 13 11 43 43 H 1.08993 * 109.44078 * 183.78324 * 15 14 13 44 44 H 1.09003 * 109.36282 * 63.71040 * 15 14 13 45 45 H 0.96998 * 119.99780 * 357.00610 * 20 19 17 46 46 H 1.09002 * 109.63900 * 68.57313 * 25 16 15 47 47 H 1.08995 * 109.64002 * 189.18831 * 25 16 15 48 48 H 1.08000 * 120.43282 * 179.72981 * 26 6 5 49 49 H 1.08001 * 119.50669 * 180.27720 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8739 2.8120 0.0000 6 6 5.2597 2.9785 0.0000 7 6 5.8632 4.3317 -0.0001 8 8 5.1551 5.3127 -0.1112 9 7 7.1978 4.4742 0.1232 10 6 8.1251 5.6218 0.0630 11 6 9.0667 4.7675 0.9221 12 6 8.3184 3.5455 0.3727 13 6 8.8845 4.9740 2.4234 14 6 9.7068 3.9285 3.1831 15 6 11.1788 4.0647 2.8012 16 7 11.3168 3.9418 1.3439 17 6 12.1576 3.0090 0.7978 18 1 11.8882 2.5126 -0.1228 19 6 13.3558 2.7013 1.4274 20 7 13.9198 3.5765 2.2326 21 14 14.1679 1.0453 1.1319 22 1 15.0899 1.1460 -0.0278 23 1 14.9340 0.6470 2.3401 24 1 13.1255 0.0263 0.8485 25 6 10.5285 4.8375 0.4833 26 6 6.0639 1.8329 -0.0065 27 6 5.4634 0.5907 -0.0014 28 7 4.1497 0.4716 -0.0014 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.2183 3.6702 0.0003 35 1 7.7552 6.5133 0.5695 36 1 8.5071 5.8266 -0.9372 37 1 8.7577 3.1325 -0.5353 38 1 8.1021 2.7873 1.1253 39 1 9.2244 5.9729 2.6970 40 1 7.8309 4.8648 2.6803 41 1 9.5922 4.0848 4.2557 42 1 9.3569 2.9300 2.9212 43 1 11.7545 3.2785 3.2895 44 1 11.5464 5.0396 3.1212 45 1 13.5211 4.4527 2.3523 46 1 10.8934 5.8595 0.5866 47 1 10.6151 4.5177 -0.5550 48 1 7.1403 1.9202 -0.0111 49 1 6.0782 -0.2973 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982002206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:24 Heat of formation + Delta-G solvation = 3.988897 kcal Electronic energy + Delta-G solvation = -30526.129118 eV Core-core repulsion = 26454.766788 eV Total energy + Delta-G solvation = -4071.362330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.30678 -41.51919 -39.82826 -38.85792 -37.66511 -34.63861 -33.88285 -33.12740 -32.29852 -31.52082 -30.89042 -27.82112 -27.52287 -27.01467 -25.52405 -24.42497 -24.00011 -23.64747 -22.35341 -21.09315 -19.53740 -19.34067 -19.18925 -18.37815 -17.44996 -17.36531 -16.99581 -16.95253 -16.59813 -16.20549 -15.87413 -15.51623 -15.38531 -15.26860 -15.05003 -14.91377 -14.81577 -14.74845 -14.09219 -13.94953 -13.49874 -13.45195 -13.34297 -13.27847 -13.10115 -12.94954 -12.73012 -12.51301 -12.46261 -11.95769 -11.86690 -11.78854 -11.76897 -11.65590 -11.35579 -11.31436 -11.14823 -11.01572 -10.71910 -10.35069 -9.85233 -9.67664 -8.77565 -8.14761 -5.38887 -0.50250 -0.00565 1.46842 1.64983 1.66234 1.71855 1.88179 1.97913 2.65893 2.70224 3.02429 3.20171 3.25210 3.35259 3.63717 3.75914 3.78347 3.83590 3.87479 4.00348 4.06930 4.13313 4.20315 4.27806 4.35889 4.43312 4.43716 4.49867 4.53820 4.56503 4.59182 4.70048 4.75752 4.80188 4.88458 4.89532 4.93141 4.94073 5.02807 5.07672 5.16793 5.21093 5.25422 5.27248 5.34730 5.51646 6.00667 6.11806 6.46100 6.49297 6.63002 6.84097 7.16078 7.84675 8.34282 9.08367 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002608 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.962522 B =10733.862415 C =11960.957552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.318 6.318 4 C 0.312 3.688 5 C -0.150 4.150 6 C -0.056 4.056 7 C 0.576 3.424 8 O -0.573 6.573 9 N -0.627 5.627 10 C 0.120 3.880 11 C -0.096 4.096 12 C 0.118 3.882 13 C -0.078 4.078 14 C -0.123 4.123 15 C 0.159 3.841 16 N -0.609 5.609 17 C -0.348 4.348 18 H 0.054 0.946 19 C -0.072 4.072 20 N -0.944 5.944 21 Si 1.112 2.888 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.269 1.269 25 C 0.164 3.836 26 C -0.183 4.183 27 C 0.144 3.856 28 N -0.532 5.532 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.001 0.999 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.165 0.835 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 -6.429 -3.991 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.225 6.225 4 C 0.134 3.866 5 C -0.171 4.171 6 C -0.067 4.067 7 C 0.366 3.634 8 O -0.454 6.454 9 N -0.360 5.360 10 C -0.002 4.002 11 C -0.098 4.098 12 C -0.003 4.003 13 C -0.115 4.115 14 C -0.162 4.162 15 C 0.033 3.967 16 N -0.333 5.333 17 C -0.478 4.478 18 H 0.072 0.928 19 C -0.269 4.269 20 N -0.585 5.585 21 Si 0.937 3.063 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.193 1.193 25 C 0.038 3.962 26 C -0.203 4.203 27 C -0.011 4.011 28 N -0.257 5.257 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.019 0.981 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.082 0.918 48 H 0.183 0.817 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.486 -7.532 -3.675 22.134 hybrid contribution -0.521 2.026 -0.326 2.118 sum -21.008 -5.506 -4.001 22.083 Atomic orbital electron populations 1.21850 0.91085 1.04362 1.03290 1.22863 0.96251 0.79665 1.02628 1.86245 1.16128 1.32585 1.87590 1.19659 0.84759 0.89358 0.92867 1.21083 0.94607 0.96595 1.04853 1.20025 0.93308 0.93553 0.99814 1.17978 0.80891 0.88233 0.76271 1.90744 1.61080 1.41153 1.52435 1.49973 1.03500 1.13560 1.68920 1.23361 0.85063 0.90863 1.00902 1.22406 0.95419 0.95816 0.96205 1.23512 0.81595 0.94245 1.00918 1.21064 0.99252 0.99188 0.92039 1.21834 0.95780 0.99233 0.99398 1.20637 0.94405 0.96934 0.84678 1.44229 1.48772 1.39556 1.00738 1.20076 0.99801 1.16700 1.11193 0.92842 1.27190 0.94382 1.06561 0.98810 1.70883 1.39161 1.06214 1.42221 0.82901 0.75292 0.72428 0.75634 1.21389 1.22391 1.19349 1.20873 0.88150 0.92736 0.94442 1.22867 1.02923 0.92192 1.02339 1.23016 0.88582 0.98281 0.91220 1.67304 1.07555 1.32922 1.17886 0.91674 0.87989 0.91719 0.91434 0.91490 0.83830 0.89690 0.87730 0.87832 0.88675 0.91777 0.91834 0.91237 0.92090 0.94545 0.98137 0.93602 0.96509 0.91818 0.81744 0.78135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.06 0.99 6.03 71.98 0.43 1.42 16 3 O -0.32 -7.26 10.11 -90.04 -0.91 -8.17 16 4 C 0.31 7.64 7.49 84.80 0.63 8.27 16 5 C -0.15 -3.91 9.61 22.75 0.22 -3.69 16 6 C -0.06 -1.45 5.91 -19.90 -0.12 -1.57 16 7 C 0.58 17.03 8.01 86.88 0.70 17.73 16 8 O -0.57 -20.73 17.19 -3.74 -0.06 -20.79 16 9 N -0.63 -16.25 3.44 -846.34 -2.91 -19.17 16 10 C 0.12 2.95 7.98 86.30 0.69 3.64 16 11 C -0.10 -2.63 0.87 -52.04 -0.05 -2.68 16 12 C 0.12 2.87 5.23 86.30 0.45 3.32 16 13 C -0.08 -2.18 5.02 30.53 0.15 -2.02 16 14 C -0.12 -3.94 5.99 30.55 0.18 -3.76 16 15 C 0.16 6.74 4.71 86.20 0.41 7.15 16 16 N -0.61 -26.71 2.75 -700.46 -1.92 -28.63 16 17 C -0.35 -17.38 9.42 84.03 0.79 -16.59 16 18 H 0.05 2.62 7.94 -2.91 -0.02 2.60 16 19 C -0.07 -3.82 4.66 84.86 0.40 -3.42 16 20 N -0.94 -54.90 12.77 21.65 0.28 -54.63 16 21 Si 1.11 47.59 29.98 68.60 2.06 49.65 16 22 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 25 C 0.16 5.72 5.71 86.19 0.49 6.21 16 26 C -0.18 -3.77 9.17 22.63 0.21 -3.56 16 27 C 0.14 2.66 11.17 84.62 0.94 3.61 16 28 N -0.53 -11.80 9.18 -309.14 -2.84 -14.64 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.07 1.08 8.10 -2.38 -0.02 1.06 16 34 H 0.14 3.89 7.75 -2.91 -0.02 3.86 16 35 H 0.08 2.08 8.09 -2.38 -0.02 2.06 16 36 H 0.10 2.27 8.09 -2.38 -0.02 2.26 16 37 H 0.10 2.36 7.91 -2.39 -0.02 2.34 16 38 H 0.10 2.21 6.12 -2.39 -0.01 2.19 16 39 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.06 1.68 8.02 -2.39 -0.02 1.66 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.92 7.37 -2.39 -0.02 1.91 16 43 H 0.04 1.78 6.77 -2.39 -0.02 1.76 16 44 H 0.00 0.03 7.92 -2.39 -0.02 0.01 16 45 H 0.25 15.11 6.92 -92.71 -0.64 14.47 16 46 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 2.17 7.78 -2.39 -0.02 2.15 16 48 H 0.17 3.00 4.24 -2.91 -0.01 2.98 16 49 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -67.52 392.02 2.04 -65.48 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.08 Total: 17.73 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 7.27 Total: 13.17 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -7.40 Total: -117.06 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.97 Total: -28.96 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.06 Total: 49.65 kcal Total: -67.52 2.04 -65.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982002206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.471 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds