Wall clock time and date at job start Wed Apr 1 2020 05:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47139 * 2 1 4 4 C 1.35645 * 116.99816 * 179.97438 * 3 2 1 5 5 C 1.39343 * 120.54179 * 0.26934 * 4 3 2 6 6 C 1.38306 * 118.43643 * 180.28618 * 5 4 3 7 7 C 1.38765 * 119.44780 * 359.73010 * 6 5 4 8 8 N 1.31378 * 121.06495 * 359.97438 * 7 6 5 9 9 C 1.32855 * 121.69709 * 0.02562 * 8 7 6 10 10 C 1.47834 * 119.78175 * 179.97438 * 9 8 7 11 11 O 1.21551 * 119.99413 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99974 * 0.02562 * 10 9 8 13 13 C 1.47677 * 134.45047 * 179.97438 * 12 10 9 14 14 C 1.53444 * 85.96941 * 155.71345 * 13 12 10 15 15 C 1.47665 * 134.45637 * 0.02562 * 12 10 9 16 16 C 1.52628 * 113.71744 * 268.85066 * 14 13 12 17 17 C 1.53186 * 109.35647 * 171.27591 * 16 14 13 18 18 C 1.52669 * 109.42823 * 58.92861 * 17 16 14 19 19 N 1.46895 * 109.34484 * 303.77394 * 18 17 16 20 20 C 1.36941 * 120.68886 * 235.30832 * 19 18 17 21 21 H 1.07999 * 120.00331 * 151.85862 * 20 19 18 22 22 C 1.38812 * 120.00065 * 331.87001 * 20 19 18 23 23 N 1.31627 * 119.99737 * 335.04228 * 22 20 19 24 24 Si 1.86800 * 120.00421 * 155.04594 * 22 20 19 25 25 H 1.48499 * 109.46785 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47247 * 119.99720 * 24 22 20 27 27 H 1.48498 * 109.47104 * 239.99637 * 24 22 20 28 28 C 1.47110 * 118.62431 * 55.03629 * 19 18 17 29 29 H 1.09004 * 109.47712 * 300.00377 * 1 2 3 30 30 H 1.09010 * 109.47057 * 59.99972 * 1 2 3 31 31 H 1.08998 * 109.47670 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47351 * 239.99918 * 2 1 3 33 33 H 1.09006 * 109.46560 * 119.99482 * 2 1 3 34 34 H 1.07999 * 120.78355 * 0.02562 * 5 4 3 35 35 H 1.08002 * 120.27423 * 179.70751 * 6 5 4 36 36 H 1.08003 * 119.46523 * 180.02562 * 7 6 5 37 37 H 1.08997 * 113.79514 * 41.45269 * 13 12 10 38 38 H 1.08994 * 113.79584 * 269.97738 * 13 12 10 39 39 H 1.09002 * 113.79643 * 90.02067 * 15 12 10 40 40 H 1.09000 * 113.79467 * 318.54909 * 15 12 10 41 41 H 1.09002 * 109.49357 * 291.24383 * 16 14 13 42 42 H 1.09005 * 109.49027 * 51.31330 * 16 14 13 43 43 H 1.08998 * 109.49150 * 179.03004 * 17 16 14 44 44 H 1.09005 * 109.48818 * 299.09987 * 17 16 14 45 45 H 1.08998 * 109.43757 * 183.78551 * 18 17 16 46 46 H 1.09004 * 109.36592 * 63.70916 * 18 17 16 47 47 H 0.96996 * 119.99632 * 354.27097 * 23 22 20 48 48 H 1.09002 * 109.63459 * 68.57930 * 28 19 18 49 49 H 1.09000 * 109.64288 * 189.19161 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2103 0.4280 -0.0046 6 6 5.5738 0.6594 0.0023 7 6 6.0443 1.9648 0.0083 8 7 5.2154 2.9841 0.0070 9 6 3.8980 2.8125 0.0005 10 6 3.0041 3.9900 -0.0001 11 8 1.7982 3.8375 -0.0055 12 7 3.5263 5.2325 0.0055 13 6 2.9551 6.5943 0.0063 14 6 4.2806 7.0328 0.6430 15 6 4.8987 5.7774 0.0122 16 6 4.2659 7.0093 2.1690 17 6 5.6848 7.2494 2.6942 18 6 6.1928 8.5967 2.1869 19 7 6.1216 8.6227 0.7200 20 6 7.2340 8.9003 -0.0290 21 1 7.3274 8.4977 -1.0268 22 6 8.2416 9.6988 0.4944 23 7 7.9658 10.5694 1.4424 24 14 9.9888 9.5381 -0.1466 25 1 10.0344 8.4954 -1.2030 26 1 10.4295 10.8377 -0.7138 27 1 10.8914 9.1529 0.9679 28 6 4.8319 8.3384 0.0718 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8206 -0.5793 -0.0095 35 1 6.2667 -0.1691 0.0033 36 1 7.1090 2.1458 0.0132 37 1 2.0927 6.7091 0.6628 38 1 2.7900 7.0025 -0.9908 39 1 5.3110 5.9430 -0.9831 40 1 5.5808 5.2431 0.6735 41 1 3.6040 7.7926 2.5386 42 1 3.9097 6.0388 2.5144 43 1 5.6740 7.2502 3.7841 44 1 6.3435 6.4575 2.3372 45 1 7.2260 8.7377 2.5044 46 1 5.5725 9.3942 2.5961 47 1 7.0466 10.7123 1.7171 48 1 4.1335 9.1505 0.2740 49 1 4.9771 8.2353 -1.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982176315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:37 Heat of formation + Delta-G solvation = 25.492651 kcal Electronic energy + Delta-G solvation = -31113.780560 eV Core-core repulsion = 27043.350703 eV Total energy + Delta-G solvation = -4070.429857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.13919 -40.19801 -38.51933 -37.91169 -35.91647 -32.90226 -32.53399 -32.37430 -30.67373 -30.31001 -29.50313 -26.21694 -25.87709 -25.15777 -24.91888 -23.60134 -22.45290 -22.26592 -20.76261 -19.65939 -18.47838 -17.75861 -17.39451 -17.29468 -16.96896 -16.54590 -15.65954 -15.52176 -15.22091 -14.63147 -14.41225 -14.37783 -14.01833 -13.71029 -13.61074 -13.41840 -13.32082 -13.04032 -12.97487 -12.83013 -12.77680 -12.48247 -12.25630 -11.81408 -11.67003 -11.60344 -11.28458 -11.23760 -10.94793 -10.67615 -10.35426 -10.16025 -10.13554 -10.09311 -10.06392 -9.93136 -9.68101 -9.37922 -9.20470 -8.72653 -8.34886 -8.27270 -6.82636 -6.02528 -3.19019 0.49704 0.98727 2.76952 2.82248 3.01813 3.53393 3.55973 3.69313 3.77061 4.05094 4.28762 4.35818 4.54517 4.56638 4.62652 4.71585 4.77769 4.84526 4.89477 5.12582 5.19659 5.27765 5.32426 5.37438 5.46907 5.53956 5.56623 5.67501 5.70044 5.73138 5.77355 5.86019 5.86945 6.07341 6.09419 6.11396 6.23293 6.33507 6.43286 6.50663 6.57133 6.67860 6.75002 6.83560 6.96655 7.14986 7.26525 7.60150 7.95208 8.04647 8.38524 8.61886 9.15361 9.88544 10.33786 11.25817 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.002868 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.166356 B = 9760.605354 C =10771.116643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.272 6.272 4 C 0.135 3.865 5 C -0.179 4.179 6 C -0.109 4.109 7 C 0.058 3.942 8 N -0.409 5.409 9 C 0.052 3.948 10 C 0.587 3.413 11 O -0.530 6.530 12 N -0.623 5.623 13 C 0.116 3.884 14 C -0.108 4.108 15 C 0.141 3.859 16 C -0.081 4.081 17 C -0.135 4.135 18 C 0.149 3.851 19 N -0.595 5.595 20 C -0.344 4.344 21 H 0.056 0.944 22 C -0.025 4.025 23 N -0.918 5.918 24 Si 1.067 2.933 25 H -0.292 1.292 26 H -0.295 1.295 27 H -0.291 1.291 28 C 0.165 3.835 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.015 0.985 47 H 0.270 0.730 48 H 0.021 0.979 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -22.317 -1.701 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.182 6.182 4 C 0.084 3.916 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.103 4.103 8 N -0.120 5.120 9 C -0.087 4.087 10 C 0.375 3.625 11 O -0.406 6.406 12 N -0.357 5.357 13 C -0.007 4.007 14 C -0.111 4.111 15 C 0.019 3.981 16 C -0.119 4.119 17 C -0.174 4.174 18 C 0.023 3.977 19 N -0.318 5.318 20 C -0.473 4.473 21 H 0.074 0.926 22 C -0.227 4.227 23 N -0.558 5.558 24 Si 0.897 3.103 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.218 1.218 28 C 0.038 3.962 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.154 -21.046 -1.524 22.622 hybrid contribution -1.679 -1.862 -0.321 2.528 sum -9.833 -22.908 -1.844 24.998 Atomic orbital electron populations 1.21735 0.92247 1.02571 1.04137 1.22931 0.96707 0.82149 1.01141 1.86430 1.16923 1.28493 1.86382 1.20016 0.84187 0.93729 0.93626 1.21716 0.94185 0.98565 1.06082 1.22218 0.95206 0.98973 0.96550 1.22812 1.00205 0.87764 0.99527 1.67845 1.01661 1.35099 1.07430 1.20716 0.90379 0.90876 1.06731 1.17253 0.86559 0.81215 0.77449 1.90803 1.13720 1.85004 1.51104 1.49936 1.11259 1.03642 1.70880 1.23262 0.97845 0.78827 1.00725 1.22660 0.94127 0.97671 0.96637 1.23166 0.83938 0.90126 1.00877 1.21080 0.97919 1.00341 0.92518 1.21982 0.95687 1.01150 0.98602 1.20836 1.00653 0.92030 0.84176 1.44081 1.04906 1.81947 1.00899 1.19980 0.97807 1.28662 1.00881 0.92615 1.25790 1.04374 0.92987 0.99501 1.70714 1.22788 1.29802 1.32502 0.83506 0.75897 0.75441 0.75431 1.21817 1.22249 1.21761 1.20763 0.88195 0.91251 0.95967 0.91240 0.91251 0.90433 0.92013 0.91997 0.83846 0.84017 0.81657 0.90431 0.89770 0.90010 0.89147 0.92285 0.93220 0.93069 0.92238 0.90210 0.96709 0.91929 0.96108 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.05 0.39 5.48 37.16 0.20 0.59 16 3 O -0.27 -3.68 8.20 -40.59 -0.33 -4.01 16 4 C 0.14 1.79 6.71 -38.55 -0.26 1.54 16 5 C -0.18 -1.69 9.13 -39.15 -0.36 -2.04 16 6 C -0.11 -0.92 10.10 -39.36 -0.40 -1.32 16 7 C 0.06 0.62 11.17 -17.55 -0.20 0.42 16 8 N -0.41 -5.89 7.89 -9.71 -0.08 -5.97 16 9 C 0.05 0.81 6.76 -82.88 -0.56 0.25 16 10 C 0.59 10.52 8.03 -12.34 -0.10 10.42 16 11 O -0.53 -10.64 15.87 -16.63 -0.26 -10.90 16 12 N -0.62 -10.56 3.45 -181.59 -0.63 -11.18 16 13 C 0.12 1.82 7.97 -3.18 -0.03 1.79 16 14 C -0.11 -1.85 0.87 -154.42 -0.13 -1.99 16 15 C 0.14 2.39 6.57 -3.16 -0.02 2.37 16 16 C -0.08 -1.38 5.03 -26.83 -0.13 -1.52 16 17 C -0.13 -2.53 5.99 -26.80 -0.16 -2.69 16 18 C 0.15 3.39 4.62 -4.00 -0.02 3.37 16 19 N -0.59 -14.23 2.86 -172.75 -0.49 -14.73 16 20 C -0.34 -9.24 9.50 -15.06 -0.14 -9.39 16 21 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 22 C -0.02 -0.68 4.69 -17.43 -0.08 -0.76 16 23 N -0.92 -27.02 12.39 55.49 0.69 -26.33 16 24 Si 1.07 24.91 29.99 -169.99 -5.10 19.82 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.17 3.30 5.71 -3.81 -0.02 3.28 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 33 H 0.06 0.42 7.71 -51.93 -0.40 0.01 16 34 H 0.14 0.90 6.46 -52.49 -0.34 0.56 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 38 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 39 H 0.08 1.42 7.97 -51.93 -0.41 1.01 16 40 H 0.09 1.60 6.43 -51.93 -0.33 1.27 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.83 8.02 -51.93 -0.42 0.42 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.15 7.37 -51.93 -0.38 0.77 16 45 H 0.08 2.05 6.23 -51.93 -0.32 1.73 16 46 H 0.01 0.35 7.94 -51.93 -0.41 -0.07 16 47 H 0.27 8.00 6.77 -40.82 -0.28 7.73 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.17 7.78 -51.93 -0.40 0.77 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -33.56 390.02 -9.89 -43.45 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.54 Total: 0.38 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.02 Total: 3.61 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.51 Total: -58.21 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.60 Total: -14.91 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.10 Total: 19.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.56 -9.89 -43.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982176315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.939 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds