Wall clock time and date at job start Wed Apr 1 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47139 * 2 1 4 4 C 1.35645 * 116.99816 * 179.97438 * 3 2 1 5 5 C 1.39343 * 120.54179 * 0.26934 * 4 3 2 6 6 C 1.38306 * 118.43643 * 180.28618 * 5 4 3 7 7 C 1.38765 * 119.44780 * 359.73010 * 6 5 4 8 8 N 1.31378 * 121.06495 * 359.97438 * 7 6 5 9 9 C 1.32855 * 121.69709 * 0.02562 * 8 7 6 10 10 C 1.47834 * 119.78175 * 179.97438 * 9 8 7 11 11 O 1.21551 * 119.99413 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99974 * 0.02562 * 10 9 8 13 13 C 1.47677 * 134.45047 * 179.97438 * 12 10 9 14 14 C 1.53444 * 85.96941 * 155.71345 * 13 12 10 15 15 C 1.47665 * 134.45637 * 0.02562 * 12 10 9 16 16 C 1.52628 * 113.71744 * 268.85066 * 14 13 12 17 17 C 1.53186 * 109.35647 * 171.27591 * 16 14 13 18 18 C 1.52669 * 109.42823 * 58.92861 * 17 16 14 19 19 N 1.46895 * 109.34484 * 303.77394 * 18 17 16 20 20 C 1.36941 * 120.68886 * 235.30832 * 19 18 17 21 21 H 1.07999 * 120.00331 * 151.85862 * 20 19 18 22 22 C 1.38812 * 120.00065 * 331.87001 * 20 19 18 23 23 N 1.31627 * 119.99737 * 335.04228 * 22 20 19 24 24 Si 1.86800 * 120.00421 * 155.04594 * 22 20 19 25 25 H 1.48499 * 109.46785 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47247 * 119.99720 * 24 22 20 27 27 H 1.48498 * 109.47104 * 239.99637 * 24 22 20 28 28 C 1.47110 * 118.62431 * 55.03629 * 19 18 17 29 29 H 1.09004 * 109.47712 * 300.00377 * 1 2 3 30 30 H 1.09010 * 109.47057 * 59.99972 * 1 2 3 31 31 H 1.08998 * 109.47670 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47351 * 239.99918 * 2 1 3 33 33 H 1.09006 * 109.46560 * 119.99482 * 2 1 3 34 34 H 1.07999 * 120.78355 * 0.02562 * 5 4 3 35 35 H 1.08002 * 120.27423 * 179.70751 * 6 5 4 36 36 H 1.08003 * 119.46523 * 180.02562 * 7 6 5 37 37 H 1.08997 * 113.79514 * 41.45269 * 13 12 10 38 38 H 1.08994 * 113.79584 * 269.97738 * 13 12 10 39 39 H 1.09002 * 113.79643 * 90.02067 * 15 12 10 40 40 H 1.09000 * 113.79467 * 318.54909 * 15 12 10 41 41 H 1.09002 * 109.49357 * 291.24383 * 16 14 13 42 42 H 1.09005 * 109.49027 * 51.31330 * 16 14 13 43 43 H 1.08998 * 109.49150 * 179.03004 * 17 16 14 44 44 H 1.09005 * 109.48818 * 299.09987 * 17 16 14 45 45 H 1.08998 * 109.43757 * 183.78551 * 18 17 16 46 46 H 1.09004 * 109.36592 * 63.70916 * 18 17 16 47 47 H 0.96996 * 119.99632 * 354.27097 * 23 22 20 48 48 H 1.09002 * 109.63459 * 68.57930 * 28 19 18 49 49 H 1.09000 * 109.64288 * 189.19161 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2103 0.4280 -0.0046 6 6 5.5738 0.6594 0.0023 7 6 6.0443 1.9648 0.0083 8 7 5.2154 2.9841 0.0070 9 6 3.8980 2.8125 0.0005 10 6 3.0041 3.9900 -0.0001 11 8 1.7982 3.8375 -0.0055 12 7 3.5263 5.2325 0.0055 13 6 2.9551 6.5943 0.0063 14 6 4.2806 7.0328 0.6430 15 6 4.8987 5.7774 0.0122 16 6 4.2659 7.0093 2.1690 17 6 5.6848 7.2494 2.6942 18 6 6.1928 8.5967 2.1869 19 7 6.1216 8.6227 0.7200 20 6 7.2340 8.9003 -0.0290 21 1 7.3274 8.4977 -1.0268 22 6 8.2416 9.6988 0.4944 23 7 7.9658 10.5694 1.4424 24 14 9.9888 9.5381 -0.1466 25 1 10.0344 8.4954 -1.2030 26 1 10.4295 10.8377 -0.7138 27 1 10.8914 9.1529 0.9679 28 6 4.8319 8.3384 0.0718 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8206 -0.5793 -0.0095 35 1 6.2667 -0.1691 0.0033 36 1 7.1090 2.1458 0.0132 37 1 2.0927 6.7091 0.6628 38 1 2.7900 7.0025 -0.9908 39 1 5.3110 5.9430 -0.9831 40 1 5.5808 5.2431 0.6735 41 1 3.6040 7.7926 2.5386 42 1 3.9097 6.0388 2.5144 43 1 5.6740 7.2502 3.7841 44 1 6.3435 6.4575 2.3372 45 1 7.2260 8.7377 2.5044 46 1 5.5725 9.3942 2.5961 47 1 7.0466 10.7123 1.7171 48 1 4.1335 9.1505 0.2740 49 1 4.9771 8.2353 -1.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982176315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:35 Heat of formation + Delta-G solvation = 5.934865 kcal Electronic energy + Delta-G solvation = -31114.628649 eV Core-core repulsion = 27043.350703 eV Total energy + Delta-G solvation = -4071.277946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.17798 -41.42328 -39.43916 -39.22133 -37.61702 -34.56297 -33.52231 -33.06578 -32.35565 -31.52628 -30.76797 -27.57928 -27.24905 -27.06152 -25.74900 -24.56049 -24.00746 -23.18022 -22.36385 -20.91380 -19.43804 -19.26906 -19.10668 -18.52158 -17.92702 -17.35015 -16.87107 -16.82294 -16.33026 -16.00070 -15.85795 -15.51038 -15.38207 -15.36822 -14.98057 -14.67191 -14.51235 -14.35427 -14.02889 -13.93682 -13.61057 -13.52824 -13.36802 -13.29483 -13.22935 -12.87009 -12.68509 -12.48745 -12.29769 -11.96761 -11.87444 -11.84387 -11.77298 -11.63228 -11.36151 -11.23871 -11.01514 -10.86258 -10.51576 -10.34789 -9.81491 -9.45539 -8.83927 -8.16246 -5.31494 -0.38860 0.19729 1.63347 1.67990 1.70579 1.78357 1.86565 2.06052 2.70172 2.79553 3.02414 3.21541 3.35569 3.52723 3.65960 3.69796 3.79931 3.93562 3.96712 3.99428 4.04147 4.12201 4.21670 4.27775 4.30189 4.36880 4.43189 4.50858 4.59464 4.66807 4.70529 4.75949 4.82098 4.87351 4.87636 4.90174 4.96048 4.98265 5.03877 5.05456 5.18755 5.20594 5.27846 5.37607 5.42332 5.52001 5.92487 6.21063 6.47285 6.62513 6.71046 7.11670 7.13385 7.85037 8.30441 9.08723 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.002868 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.166356 B = 9760.605354 C =10771.116643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.036 3.964 3 O -0.306 6.306 4 C 0.126 3.874 5 C -0.171 4.171 6 C -0.085 4.085 7 C 0.047 3.953 8 N -0.438 5.438 9 C 0.006 3.994 10 C 0.581 3.419 11 O -0.564 6.564 12 N -0.625 5.625 13 C 0.119 3.881 14 C -0.101 4.101 15 C 0.152 3.848 16 C -0.073 4.073 17 C -0.122 4.122 18 C 0.156 3.844 19 N -0.611 5.611 20 C -0.343 4.343 21 H 0.052 0.948 22 C -0.077 4.077 23 N -0.946 5.946 24 Si 1.114 2.886 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.167 3.833 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.004 0.996 47 H 0.255 0.745 48 H 0.022 0.978 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -25.886 -2.049 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 O -0.217 6.217 4 C 0.075 3.925 5 C -0.197 4.197 6 C -0.104 4.104 7 C -0.115 4.115 8 N -0.150 5.150 9 C -0.131 4.131 10 C 0.371 3.629 11 O -0.443 6.443 12 N -0.359 5.359 13 C -0.003 4.003 14 C -0.104 4.104 15 C 0.030 3.970 16 C -0.111 4.111 17 C -0.161 4.161 18 C 0.030 3.970 19 N -0.335 5.335 20 C -0.472 4.472 21 H 0.070 0.930 22 C -0.273 4.273 23 N -0.589 5.589 24 Si 0.940 3.060 25 H -0.197 1.197 26 H -0.222 1.222 27 H -0.216 1.216 28 C 0.041 3.959 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.205 0.795 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.065 0.935 48 H 0.040 0.960 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.605 -24.628 -1.880 25.844 hybrid contribution -1.884 -0.871 -0.238 2.089 sum -9.489 -25.499 -2.118 27.289 Atomic orbital electron populations 1.21786 0.92049 1.04151 1.02633 1.23284 0.96978 0.80472 1.03092 1.86393 1.17411 1.31531 1.86412 1.20202 0.84729 0.94026 0.93557 1.22156 0.94117 0.99005 1.04415 1.22716 0.95542 0.99232 0.92922 1.23377 1.00857 0.88366 0.98872 1.67717 1.01559 1.37149 1.08582 1.20410 0.90788 0.90870 1.10998 1.17775 0.86696 0.81975 0.76501 1.90758 1.15144 1.85596 1.52812 1.49943 1.11076 1.03941 1.70892 1.23286 0.97104 0.78452 1.01447 1.22488 0.95093 0.96025 0.96748 1.22973 0.83992 0.89744 1.00281 1.21011 0.96841 1.00965 0.92256 1.21815 0.96364 0.98168 0.99752 1.20689 0.98593 0.93947 0.83749 1.44280 1.05741 1.82072 1.01368 1.20197 0.98738 1.27414 1.00899 0.93035 1.27054 1.07844 0.92724 0.99651 1.70836 1.21735 1.31847 1.34437 0.82864 0.71888 0.75814 0.75439 1.19710 1.22243 1.21571 1.20826 0.86633 0.92639 0.95836 0.92764 0.92733 0.87240 0.89883 0.89926 0.80180 0.79359 0.79493 0.89723 0.88499 0.90640 0.89764 0.91498 0.92433 0.91055 0.92874 0.93600 0.97753 0.93527 0.96033 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.04 0.53 5.48 71.98 0.39 0.92 16 3 O -0.31 -8.13 8.20 -68.60 -0.56 -8.70 16 4 C 0.13 3.19 6.71 22.94 0.15 3.35 16 5 C -0.17 -2.59 9.13 22.55 0.21 -2.38 16 6 C -0.08 -1.06 10.10 22.41 0.23 -0.83 16 7 C 0.05 0.90 11.17 84.89 0.95 1.85 16 8 N -0.44 -12.32 7.89 -184.62 -1.46 -13.78 16 9 C 0.01 0.18 6.76 41.93 0.28 0.46 16 10 C 0.58 21.26 8.03 86.78 0.70 21.96 16 11 O -0.56 -23.37 15.87 17.11 0.27 -23.09 16 12 N -0.63 -21.35 3.45 -846.70 -2.92 -24.27 16 13 C 0.12 3.71 7.97 86.30 0.69 4.40 16 14 C -0.10 -3.44 0.87 -52.02 -0.05 -3.48 16 15 C 0.15 5.19 6.57 86.32 0.57 5.76 16 16 C -0.07 -2.44 5.03 30.53 0.15 -2.29 16 17 C -0.12 -4.53 5.99 30.55 0.18 -4.34 16 18 C 0.16 7.26 4.62 86.19 0.40 7.65 16 19 N -0.61 -29.70 2.86 -700.46 -2.00 -31.71 16 20 C -0.34 -18.65 9.50 84.03 0.80 -17.85 16 21 H 0.05 2.81 7.94 -2.91 -0.02 2.78 16 22 C -0.08 -4.29 4.69 84.86 0.40 -3.90 16 23 N -0.95 -57.18 12.39 21.65 0.27 -56.92 16 24 Si 1.11 50.57 29.99 68.60 2.06 52.63 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 28 C 0.17 6.70 5.71 86.20 0.49 7.19 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.84 7.69 -2.39 -0.02 0.82 16 33 H 0.08 0.84 7.71 -2.38 -0.02 0.83 16 34 H 0.18 1.31 6.46 -2.91 -0.02 1.29 16 35 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 38 H 0.10 2.75 8.09 -2.39 -0.02 2.73 16 39 H 0.08 2.65 7.97 -2.39 -0.02 2.63 16 40 H 0.08 2.99 6.43 -2.39 -0.02 2.98 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.87 8.02 -2.38 -0.02 1.85 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 44 H 0.05 2.04 7.37 -2.38 -0.02 2.02 16 45 H 0.05 2.44 6.23 -2.39 -0.01 2.42 16 46 H 0.00 0.21 7.94 -2.38 -0.02 0.20 16 47 H 0.25 15.70 6.77 -92.71 -0.63 15.07 16 48 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 2.30 7.78 -2.39 -0.02 2.28 16 Total: -1.00 -76.89 390.02 4.02 -72.87 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.09 Total: 15.80 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 7.28 Total: 17.17 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -6.11 Total: -126.67 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.29 Total: -31.79 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.06 Total: 52.63 kcal Total: -76.89 4.02 -72.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982176315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.801 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds