Wall clock time and date at job start Wed Apr 1 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42897 * 109.47095 * 2 1 4 4 C 1.35501 * 116.99593 * 179.97438 * 3 2 1 5 5 C 1.39169 * 119.52112 * 179.97438 * 4 3 2 6 6 C 1.37954 * 119.25948 * 180.02562 * 5 4 3 7 7 C 1.40283 * 118.36020 * 0.02562 * 6 5 4 8 8 C 1.47619 * 120.50105 * 180.02562 * 7 6 5 9 9 O 1.21579 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99995 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99837 * 179.97438 * 10 8 7 12 12 C 1.53582 * 112.24129 * 297.64743 * 11 10 8 13 13 C 1.55469 * 106.05709 * 238.16298 * 12 11 10 14 14 C 1.54760 * 104.36118 * 335.36018 * 13 12 11 15 15 C 1.54771 * 103.21494 * 37.68163 * 14 13 12 16 16 H 1.08997 * 112.61858 * 85.33595 * 15 14 13 17 17 N 1.46983 * 108.69137 * 209.79871 * 15 14 13 18 18 C 1.36936 * 125.57813 * 294.13772 * 17 15 14 19 19 H 1.07999 * 120.00175 * 159.12595 * 18 17 15 20 20 C 1.38810 * 120.00061 * 339.12835 * 18 17 15 21 21 N 1.31613 * 120.00271 * 156.95406 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 336.95031 * 20 18 17 23 23 H 1.48502 * 109.47058 * 86.54291 * 22 20 18 24 24 H 1.48493 * 109.47122 * 206.54100 * 22 20 18 25 25 H 1.48498 * 109.47291 * 326.54657 * 22 20 18 26 26 C 1.47371 * 108.84264 * 114.13012 * 17 15 14 27 27 C 1.54868 * 104.81959 * 335.31132 * 26 17 15 28 28 C 1.39528 * 119.00222 * 359.97438 * 7 6 5 29 29 N 1.31660 * 120.62545 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47072 * 300.00366 * 1 2 3 31 31 H 1.09000 * 109.46678 * 60.00406 * 1 2 3 32 32 H 1.08994 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47072 * 239.99634 * 2 1 3 34 34 H 1.09000 * 109.46678 * 119.99594 * 2 1 3 35 35 H 1.07998 * 120.37405 * 0.04380 * 5 4 3 36 36 H 1.08004 * 120.82215 * 179.97438 * 6 5 4 37 37 H 0.97001 * 120.00069 * 0.02562 * 10 8 7 38 38 H 1.08998 * 110.02023 * 358.13989 * 12 11 10 39 39 H 1.09005 * 110.01575 * 119.53158 * 12 11 10 40 40 H 1.09004 * 110.50617 * 216.57371 * 13 12 11 41 41 H 1.08996 * 110.39291 * 94.09756 * 13 12 11 42 42 H 1.09001 * 110.67465 * 279.24724 * 14 13 12 43 43 H 1.09005 * 110.66940 * 156.10642 * 14 13 12 44 44 H 0.97000 * 120.00289 * 179.97438 * 21 20 18 45 45 H 1.08995 * 110.36927 * 216.47277 * 26 17 15 46 46 H 1.08999 * 110.45775 * 94.19179 * 26 17 15 47 47 H 1.09004 * 110.96561 * 278.94797 * 27 26 17 48 48 H 1.09001 * 110.99677 * 155.20632 * 27 26 17 49 49 H 1.08000 * 119.68568 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5247 0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9895 0.0000 7 6 6.0566 1.8492 0.0000 8 6 7.5269 1.9810 0.0006 9 8 8.0383 3.0840 0.0016 10 7 8.3022 0.8786 0.0011 11 6 9.7614 1.0095 0.0011 12 6 10.2815 1.7179 -1.2584 13 6 11.2665 0.7235 -1.9352 14 6 11.7497 -0.1849 -0.7792 15 6 10.4785 -0.3637 0.0853 16 1 9.8433 -1.1766 -0.2663 17 7 10.8839 -0.5538 1.4853 18 6 11.5815 -1.6259 1.9742 19 1 12.1211 -1.5397 2.9058 20 6 11.5953 -2.8234 1.2725 21 7 12.5754 -3.6824 1.4558 22 14 10.2225 -3.2159 0.0679 23 1 10.5483 -2.6362 -1.2599 24 1 10.0793 -4.6887 -0.0567 25 1 8.9486 -2.6347 0.5626 26 6 10.4168 0.5983 2.2767 27 6 10.2856 1.7542 1.2543 28 6 5.4586 0.5885 0.0005 29 7 4.1476 0.4680 0.0015 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2116 3.6704 -0.0001 36 1 5.6711 3.9795 -0.0008 37 1 7.8942 -0.0014 0.0007 38 1 9.4509 1.9549 -1.9231 39 1 10.8107 2.6299 -0.9819 40 1 12.1071 1.2594 -2.3763 41 1 10.7504 0.1345 -2.6933 42 1 12.5377 0.3058 -0.2078 43 1 12.0925 -1.1460 -1.1626 44 1 12.5848 -4.5195 0.9657 45 1 11.1473 0.8522 3.0447 46 1 9.4497 0.3818 2.7306 47 1 11.2545 2.2134 1.0584 48 1 9.5656 2.4979 1.5958 49 1 6.0772 -0.2968 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990971635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:01 Heat of formation + Delta-G solvation = -22.499948 kcal Electronic energy + Delta-G solvation = -31111.762097 eV Core-core repulsion = 27039.251125 eV Total energy + Delta-G solvation = -4072.510972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.14692 -41.46983 -39.86950 -38.73067 -35.97822 -34.93659 -34.05627 -33.67489 -33.10446 -31.91493 -30.85904 -28.73958 -27.81800 -25.62232 -25.39877 -25.34593 -23.34462 -22.66309 -21.73294 -21.60802 -20.48622 -19.74661 -19.19671 -18.72979 -18.14989 -17.62895 -17.40981 -16.58467 -16.28939 -16.15302 -15.61747 -15.58480 -15.51887 -15.08697 -14.98686 -14.84442 -14.80046 -14.36558 -14.24302 -13.89023 -13.79491 -13.50510 -13.36162 -13.29295 -13.08979 -12.91112 -12.64618 -12.53802 -12.44531 -12.31351 -11.93577 -11.88354 -11.76678 -11.72730 -11.40063 -11.20348 -11.11597 -11.10047 -10.72154 -10.66513 -10.13005 -9.67469 -9.04528 -8.16600 -5.42610 -0.42062 0.07613 1.27854 1.35150 1.45220 1.75733 1.87417 1.99743 2.41302 2.70319 3.00752 3.03343 3.20255 3.36669 3.59298 3.71838 3.73237 3.84969 3.90757 3.95555 4.05284 4.17083 4.24490 4.26854 4.28966 4.38325 4.42442 4.50765 4.54777 4.61810 4.72258 4.75031 4.84034 4.84832 4.92853 4.94873 4.98155 5.02692 5.09022 5.14575 5.17941 5.25764 5.26426 5.30518 5.45578 5.55806 5.73868 6.06139 6.12243 6.42270 6.57162 6.77740 7.10454 7.55388 8.12334 9.03913 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.003195 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.083505 B = 8760.297453 C = 9992.732659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.308 6.308 4 C 0.332 3.668 5 C -0.190 4.190 6 C 0.020 3.980 7 C -0.233 4.233 8 C 0.575 3.425 9 O -0.553 6.553 10 N -0.706 5.706 11 C 0.168 3.832 12 C -0.102 4.102 13 C -0.116 4.116 14 C -0.125 4.125 15 C 0.139 3.861 16 H 0.040 0.960 17 N -0.616 5.616 18 C -0.229 4.229 19 H 0.057 0.943 20 C -0.026 4.026 21 N -0.953 5.953 22 Si 0.931 3.069 23 H -0.260 1.260 24 H -0.315 1.315 25 H -0.266 1.266 26 C 0.128 3.872 27 C -0.116 4.116 28 C 0.176 3.824 29 N -0.557 5.557 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.402 0.598 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.261 0.739 45 H 0.047 0.953 46 H 0.024 0.976 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.454 13.328 -7.322 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.215 6.215 4 C 0.153 3.847 5 C -0.210 4.210 6 C -0.005 4.005 7 C -0.239 4.239 8 C 0.363 3.637 9 O -0.432 6.432 10 N -0.357 5.357 11 C 0.081 3.919 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.033 3.967 16 H 0.057 0.943 17 N -0.342 5.342 18 C -0.357 4.357 19 H 0.075 0.925 20 C -0.221 4.221 21 N -0.600 5.600 22 Si 0.761 3.239 23 H -0.187 1.187 24 H -0.244 1.244 25 H -0.192 1.192 26 C 0.003 3.997 27 C -0.155 4.155 28 C 0.019 3.981 29 N -0.281 5.281 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.192 0.808 36 H 0.185 0.815 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.619 13.269 -7.281 26.391 hybrid contribution 0.103 -1.082 -0.046 1.088 sum -21.515 12.187 -7.327 25.790 Atomic orbital electron populations 1.21836 0.90811 1.04258 1.03556 1.22861 0.96455 0.79862 1.02469 1.86215 1.16298 1.32244 1.86695 1.20384 0.84450 0.90510 0.89336 1.21308 0.95590 0.96102 1.08019 1.21694 0.91604 0.99505 0.87694 1.20752 0.93640 0.95935 1.13524 1.17984 0.86171 0.83979 0.75554 1.90746 1.75341 1.26114 1.51001 1.45866 1.05933 1.09202 1.74665 1.21529 0.78810 0.94614 0.96961 1.22456 0.98873 0.98145 0.94619 1.22567 0.99239 0.96822 0.96766 1.22719 0.97726 0.99163 0.96841 1.22220 0.94813 0.93777 0.85900 0.94286 1.44846 1.64839 1.21162 1.03318 1.18500 1.21369 0.88810 1.07041 0.92492 1.25520 0.99562 0.96043 1.00982 1.69967 1.31856 1.11701 1.46465 0.86181 0.82156 0.74941 0.80581 1.18650 1.24405 1.19159 1.21787 0.96739 0.86816 0.94326 1.23013 1.01748 0.96596 0.94165 1.22784 0.89340 0.96705 0.89296 1.67342 1.06408 1.33588 1.20776 0.91409 0.91282 0.88492 0.91664 0.91876 0.80759 0.81474 0.76137 0.90918 0.89940 0.89463 0.91339 0.91559 0.93814 0.92988 0.93483 0.95834 0.89652 0.89576 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.99 0.74 -0.71 16 2 C 0.06 0.90 6.02 71.99 0.43 1.34 16 3 O -0.31 -5.86 10.10 -88.02 -0.89 -6.75 16 4 C 0.33 6.87 7.49 84.83 0.64 7.50 16 5 C -0.19 -3.22 10.02 22.43 0.22 -3.00 16 6 C 0.02 0.38 9.70 22.70 0.22 0.60 16 7 C -0.23 -5.24 5.89 -19.99 -0.12 -5.36 16 8 C 0.57 15.40 6.96 86.72 0.60 16.01 16 9 O -0.55 -16.87 14.22 -3.96 -0.06 -16.93 16 10 N -0.71 -19.98 5.18 -418.83 -2.17 -22.15 16 11 C 0.17 5.37 0.74 5.19 0.00 5.37 16 12 C -0.10 -2.87 5.41 31.64 0.17 -2.69 16 13 C -0.12 -3.32 6.87 32.04 0.22 -3.10 16 14 C -0.12 -4.79 5.81 31.80 0.18 -4.60 16 15 C 0.14 5.53 2.15 46.24 0.10 5.63 16 16 H 0.04 1.66 3.22 -2.39 -0.01 1.66 16 17 N -0.62 -28.45 2.81 -663.70 -1.86 -30.32 16 18 C -0.23 -12.82 10.29 84.03 0.87 -11.96 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 20 C -0.03 -1.50 5.34 84.86 0.45 -1.04 16 21 N -0.95 -59.25 13.97 21.65 0.30 -58.94 16 22 Si 0.93 44.85 23.72 68.60 1.63 46.48 16 23 H -0.26 -11.65 6.12 99.48 0.61 -11.04 16 24 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 25 H -0.27 -11.93 6.94 99.48 0.69 -11.24 16 26 C 0.13 4.98 7.23 86.85 0.63 5.60 16 27 C -0.12 -3.79 5.71 31.89 0.18 -3.61 16 28 C 0.18 3.90 10.71 85.03 0.91 4.81 16 29 N -0.56 -12.71 9.18 -307.82 -2.82 -15.54 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.06 1.04 8.10 -2.39 -0.02 1.03 16 35 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.17 2.71 7.73 -2.91 -0.02 2.69 16 37 H 0.40 10.70 6.53 -92.71 -0.61 10.10 16 38 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 39 H 0.08 2.21 7.37 -2.38 -0.02 2.19 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 43 H 0.04 1.87 6.87 -2.38 -0.02 1.85 16 44 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.08 2.68 7.63 -2.38 -0.02 2.66 16 48 H 0.09 2.72 6.53 -2.39 -0.02 2.70 16 49 H 0.17 3.32 6.41 -2.91 -0.02 3.30 16 Total: -1.00 -68.98 381.56 0.84 -68.14 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.25 Total: 25.23 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 6.46 Total: 10.78 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.55 Total: -126.94 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.95 Total: -23.68 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.63 Total: 46.48 kcal Total: -68.98 0.84 -68.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990971635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.639 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds