Wall clock time and date at job start Wed Apr 1 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47108 * 2 1 4 4 C 1.35497 * 116.99787 * 179.97438 * 3 2 1 5 5 C 1.39168 * 119.52563 * 179.97438 * 4 3 2 6 6 C 1.37962 * 119.26518 * 179.70049 * 5 4 3 7 7 C 1.40283 * 118.35153 * 0.58294 * 6 5 4 8 8 C 1.47617 * 120.49538 * 179.71076 * 7 6 5 9 9 O 1.21576 * 119.99772 * 359.72531 * 8 7 6 10 10 N 1.34773 * 120.00017 * 179.72383 * 8 7 6 11 11 C 1.46498 * 120.00148 * 180.02562 * 10 8 7 12 12 C 1.51225 * 111.06758 * 68.34221 * 11 10 8 13 13 C 1.55683 * 104.61108 * 83.87179 * 12 11 10 14 14 C 1.55037 * 105.77244 * 7.13102 * 13 12 11 15 15 C 1.50514 * 102.34270 * 24.51057 * 14 13 12 16 16 H 1.09009 * 108.14407 * 66.54400 * 15 14 13 17 17 N 1.42707 * 128.14765 * 198.97268 * 15 14 13 18 18 C 1.36929 * 127.10347 * 331.02174 * 17 15 14 19 19 H 1.08006 * 120.00144 * 7.40344 * 18 17 15 20 20 C 1.38817 * 120.00171 * 187.39433 * 18 17 15 21 21 N 1.31612 * 119.99761 * 7.44336 * 20 18 17 22 22 Si 1.86796 * 120.00059 * 187.43632 * 20 18 17 23 23 H 1.48497 * 109.47526 * 265.01935 * 22 20 18 24 24 H 1.48504 * 109.47181 * 25.02116 * 22 20 18 25 25 H 1.48503 * 109.47030 * 145.02187 * 22 20 18 26 26 C 1.49301 * 105.79279 * 151.28484 * 17 15 14 27 27 C 1.52127 * 111.08716 * 288.30495 * 11 10 8 28 28 C 1.39525 * 119.00583 * 359.44074 * 7 6 5 29 29 N 1.31657 * 120.62699 * 0.27145 * 28 7 6 30 30 H 1.09005 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47192 * 300.00304 * 1 2 3 32 32 H 1.09001 * 109.46930 * 60.00063 * 1 2 3 33 33 H 1.09003 * 109.46846 * 240.00083 * 2 1 3 34 34 H 1.08998 * 109.46823 * 120.00454 * 2 1 3 35 35 H 1.08000 * 120.36784 * 0.02733 * 5 4 3 36 36 H 1.07996 * 120.82039 * 180.29876 * 6 5 4 37 37 H 0.97004 * 119.99898 * 0.02562 * 10 8 7 38 38 H 1.08999 * 110.41073 * 202.66081 * 12 11 10 39 39 H 1.09006 * 110.40582 * 324.97153 * 12 11 10 40 40 H 1.09000 * 110.15940 * 126.36743 * 13 12 11 41 41 H 1.08992 * 110.16470 * 248.06573 * 13 12 11 42 42 H 1.09004 * 110.44560 * 266.30867 * 14 13 12 43 43 H 1.08995 * 110.93210 * 142.93933 * 14 13 12 44 44 H 0.96998 * 120.00107 * 179.97438 * 21 20 18 45 45 H 1.09005 * 110.04392 * 110.35862 * 26 17 15 46 46 H 1.08999 * 110.04639 * 231.83346 * 26 17 15 47 47 H 1.09001 * 111.15364 * 43.92283 * 27 11 10 48 48 H 1.09000 * 111.15572 * 168.11264 * 27 11 10 49 49 H 1.08007 * 119.68529 * 180.25449 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5247 0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 0.0069 7 6 6.0565 1.8492 0.0016 8 6 7.5268 1.9811 0.0021 9 8 8.0382 3.0841 0.0021 10 7 8.3022 0.8788 0.0026 11 6 9.7613 1.0096 0.0037 12 6 10.2553 1.5768 1.3156 13 6 10.3561 0.3453 2.2627 14 6 10.0836 -0.8944 1.3725 15 6 10.4669 -0.3984 0.0041 16 1 11.5418 -0.2169 -0.0024 17 7 10.0991 -0.9389 -1.2644 18 6 9.8122 -2.2462 -1.5534 19 1 9.7356 -2.9712 -0.7566 20 6 9.6196 -2.6397 -2.8707 21 7 9.8555 -1.7941 -3.8512 22 14 9.0258 -4.3694 -3.2514 23 1 10.1933 -5.2428 -3.5330 24 1 8.2776 -4.9038 -2.0853 25 1 8.1345 -4.3366 -4.4387 26 6 10.0982 0.2143 -2.2126 27 6 10.2677 1.5026 -1.3435 28 6 5.4586 0.5886 0.0016 29 7 4.1476 0.4681 0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2115 3.6704 -0.0004 36 1 5.6710 3.9796 0.0115 37 1 7.8942 -0.0012 0.0022 38 1 11.2345 2.0377 1.1858 39 1 9.5433 2.3030 1.7078 40 1 11.3536 0.2871 2.6983 41 1 9.6061 0.4149 3.0506 42 1 9.0281 -1.1642 1.4082 43 1 10.7099 -1.7345 1.6726 44 1 9.7213 -2.0691 -4.7716 45 1 10.9276 0.1221 -2.9138 46 1 9.1529 0.2521 -2.7540 47 1 9.6510 2.3183 -1.7210 48 1 11.3150 1.7990 -1.2856 49 1 6.0772 -0.2968 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990971638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:09 Heat of formation + Delta-G solvation = 2.502075 kcal Electronic energy + Delta-G solvation = -31322.107612 eV Core-core repulsion = 27250.680809 eV Total energy + Delta-G solvation = -4071.426803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.99369 -40.32903 -38.59944 -37.47886 -34.49191 -33.31204 -32.58381 -32.29893 -31.75445 -30.42568 -29.45527 -26.96126 -25.92184 -24.49466 -24.28078 -23.99629 -22.45271 -21.05256 -20.49603 -19.64602 -18.87294 -18.70045 -17.61040 -16.91183 -16.49985 -16.49370 -15.70225 -14.99530 -14.95748 -14.60203 -14.49413 -14.28172 -14.13948 -13.97227 -13.94962 -13.45606 -13.34004 -12.88327 -12.66615 -12.59699 -12.44843 -12.36533 -11.95584 -11.79511 -11.45616 -11.42091 -11.04548 -10.95043 -10.90788 -10.83050 -10.53846 -10.31061 -10.08586 -10.06711 -10.02877 -9.98806 -9.72366 -9.52805 -9.18364 -8.72832 -8.68134 -8.45964 -6.88980 -5.80535 -3.14289 0.71503 1.10270 2.79316 3.06194 3.35214 3.41143 3.43062 3.51200 3.88519 4.08883 4.41816 4.58983 4.74995 4.76822 4.77257 4.83035 4.93752 5.04759 5.16976 5.21484 5.25709 5.43083 5.43801 5.49821 5.57630 5.58246 5.67243 5.72525 5.79554 5.80271 5.90827 5.94956 6.06166 6.13389 6.20419 6.23389 6.29079 6.35348 6.41868 6.48072 6.62360 6.79503 6.87336 7.03012 7.13224 7.46064 7.56872 7.63872 7.71840 7.96583 8.14614 8.59284 9.08119 9.75587 10.45054 11.33084 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.003892 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.583063 B = 7192.947787 C = 9203.215469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.306 6.306 4 C 0.338 3.662 5 C -0.201 4.201 6 C 0.015 3.985 7 C -0.219 4.219 8 C 0.566 3.434 9 O -0.546 6.546 10 N -0.684 5.684 11 C 0.131 3.869 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.024 0.976 17 N -0.583 5.583 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.001 4.001 21 N -0.914 5.914 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.291 1.291 26 C 0.180 3.820 27 C -0.138 4.138 28 C 0.182 3.818 29 N -0.542 5.542 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.253 0.747 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 6.719 10.514 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.213 6.213 4 C 0.159 3.841 5 C -0.221 4.221 6 C -0.011 4.011 7 C -0.224 4.224 8 C 0.352 3.648 9 O -0.425 6.425 10 N -0.335 5.335 11 C 0.044 3.956 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.153 4.153 15 C 0.048 3.952 16 H 0.041 0.959 17 N -0.307 5.307 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.198 4.198 21 N -0.561 5.561 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.057 3.943 27 C -0.177 4.177 28 C 0.024 3.976 29 N -0.266 5.266 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.790 6.673 10.284 17.009 hybrid contribution -0.089 -0.885 -0.457 1.000 sum -11.879 5.788 9.828 16.468 Atomic orbital electron populations 1.21825 0.92992 1.02970 1.03225 1.22666 0.94715 0.80832 1.02962 1.86187 1.16895 1.31045 1.87125 1.20042 0.84038 0.90076 0.89907 1.21010 0.95582 0.95714 1.09808 1.21503 0.91406 0.99477 0.88729 1.20957 0.95283 0.94963 1.11242 1.17781 0.85405 0.84848 0.76762 1.90728 1.74882 1.25791 1.51130 1.45647 1.06480 1.08379 1.72953 1.21550 0.79251 1.00755 0.94065 1.21867 1.01344 0.97255 0.94539 1.22603 1.01025 0.94233 0.97608 1.21622 1.01314 0.97165 0.95226 1.20822 0.96103 0.90268 0.88000 0.95874 1.43646 1.80426 1.04275 1.02321 1.18987 1.41836 0.83465 0.92062 0.90316 1.24795 1.01647 0.97832 0.95575 1.69929 1.53209 1.34337 0.98575 0.86197 0.78341 0.84071 0.77704 1.21627 1.20560 1.21704 1.21950 1.00883 0.81253 0.90250 1.22786 1.00146 0.99574 0.95163 1.22740 0.89131 0.96672 0.89024 1.67344 1.06380 1.32749 1.20085 0.90219 0.91709 0.91648 0.91250 0.91371 0.83627 0.82890 0.76221 0.91082 0.91178 0.91904 0.92253 0.91844 0.91704 0.93651 0.93283 0.93606 0.91355 0.91450 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.63 6.02 37.16 0.22 0.86 16 3 O -0.31 -3.68 10.10 -18.18 -0.18 -3.86 16 4 C 0.34 4.45 7.49 -16.96 -0.13 4.32 16 5 C -0.20 -2.34 10.02 -39.34 -0.39 -2.74 16 6 C 0.01 0.19 9.70 -38.91 -0.38 -0.19 16 7 C -0.22 -3.18 5.89 -104.82 -0.62 -3.80 16 8 C 0.57 9.46 7.08 -12.43 -0.09 9.37 16 9 O -0.55 -10.28 14.56 5.30 0.08 -10.20 16 10 N -0.68 -11.52 4.32 -47.58 -0.21 -11.73 16 11 C 0.13 2.31 0.41 -130.71 -0.05 2.26 16 12 C -0.11 -1.70 6.05 -26.20 -0.16 -1.86 16 13 C -0.12 -1.59 6.90 -24.23 -0.17 -1.75 16 14 C -0.11 -1.83 6.37 -26.90 -0.17 -2.00 16 15 C 0.16 3.05 2.65 -68.72 -0.18 2.87 16 16 H 0.02 0.49 7.99 -51.92 -0.41 0.07 16 17 N -0.58 -13.67 3.12 -162.61 -0.51 -14.18 16 18 C -0.24 -6.08 10.27 -15.06 -0.15 -6.23 16 19 H 0.08 1.96 7.84 -52.48 -0.41 1.55 16 20 C 0.00 -0.03 5.46 -17.43 -0.10 -0.12 16 21 N -0.91 -25.95 10.76 55.49 0.60 -25.35 16 22 Si 0.91 21.25 29.56 -169.99 -5.02 16.23 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.18 4.22 5.29 -0.70 0.00 4.21 16 27 C -0.14 -2.67 6.22 -25.39 -0.16 -2.83 16 28 C 0.18 2.57 10.71 -17.15 -0.18 2.39 16 29 N -0.54 -7.67 9.18 -12.96 -0.12 -7.79 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.15 1.77 7.73 -52.49 -0.41 1.37 16 37 H 0.40 6.68 5.81 -40.82 -0.24 6.45 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.12 6.84 -51.93 -0.36 0.76 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.05 1.28 7.56 -51.93 -0.39 0.88 16 46 H 0.05 1.19 7.69 -51.93 -0.40 0.79 16 47 H 0.07 1.36 7.17 -51.93 -0.37 0.99 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.17 2.19 6.41 -52.48 -0.34 1.85 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -30.37 389.79 -9.30 -39.67 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.49 Total: 7.30 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.33 Total: 4.03 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.23 Total: -59.05 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.11 Total: -14.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.37 -9.30 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990971638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.176 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds