Wall clock time and date at job start Wed Apr 1 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47108 * 2 1 4 4 C 1.35497 * 116.99787 * 179.97438 * 3 2 1 5 5 C 1.39168 * 119.52563 * 179.97438 * 4 3 2 6 6 C 1.37962 * 119.26518 * 179.70049 * 5 4 3 7 7 C 1.40283 * 118.35153 * 0.58294 * 6 5 4 8 8 C 1.47617 * 120.49538 * 179.71076 * 7 6 5 9 9 O 1.21576 * 119.99772 * 359.72531 * 8 7 6 10 10 N 1.34773 * 120.00017 * 179.72383 * 8 7 6 11 11 C 1.46498 * 120.00148 * 180.02562 * 10 8 7 12 12 C 1.51225 * 111.06758 * 68.34221 * 11 10 8 13 13 C 1.55683 * 104.61108 * 83.87179 * 12 11 10 14 14 C 1.55037 * 105.77244 * 7.13102 * 13 12 11 15 15 C 1.50514 * 102.34270 * 24.51057 * 14 13 12 16 16 H 1.09009 * 108.14407 * 66.54400 * 15 14 13 17 17 N 1.42707 * 128.14765 * 198.97268 * 15 14 13 18 18 C 1.36929 * 127.10347 * 331.02174 * 17 15 14 19 19 H 1.08006 * 120.00144 * 7.40344 * 18 17 15 20 20 C 1.38817 * 120.00171 * 187.39433 * 18 17 15 21 21 N 1.31612 * 119.99761 * 7.44336 * 20 18 17 22 22 Si 1.86796 * 120.00059 * 187.43632 * 20 18 17 23 23 H 1.48497 * 109.47526 * 265.01935 * 22 20 18 24 24 H 1.48504 * 109.47181 * 25.02116 * 22 20 18 25 25 H 1.48503 * 109.47030 * 145.02187 * 22 20 18 26 26 C 1.49301 * 105.79279 * 151.28484 * 17 15 14 27 27 C 1.52127 * 111.08716 * 288.30495 * 11 10 8 28 28 C 1.39525 * 119.00583 * 359.44074 * 7 6 5 29 29 N 1.31657 * 120.62699 * 0.27145 * 28 7 6 30 30 H 1.09005 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47192 * 300.00304 * 1 2 3 32 32 H 1.09001 * 109.46930 * 60.00063 * 1 2 3 33 33 H 1.09003 * 109.46846 * 240.00083 * 2 1 3 34 34 H 1.08998 * 109.46823 * 120.00454 * 2 1 3 35 35 H 1.08000 * 120.36784 * 0.02733 * 5 4 3 36 36 H 1.07996 * 120.82039 * 180.29876 * 6 5 4 37 37 H 0.97004 * 119.99898 * 0.02562 * 10 8 7 38 38 H 1.08999 * 110.41073 * 202.66081 * 12 11 10 39 39 H 1.09006 * 110.40582 * 324.97153 * 12 11 10 40 40 H 1.09000 * 110.15940 * 126.36743 * 13 12 11 41 41 H 1.08992 * 110.16470 * 248.06573 * 13 12 11 42 42 H 1.09004 * 110.44560 * 266.30867 * 14 13 12 43 43 H 1.08995 * 110.93210 * 142.93933 * 14 13 12 44 44 H 0.96998 * 120.00107 * 179.97438 * 21 20 18 45 45 H 1.09005 * 110.04392 * 110.35862 * 26 17 15 46 46 H 1.08999 * 110.04639 * 231.83346 * 26 17 15 47 47 H 1.09001 * 111.15364 * 43.92283 * 27 11 10 48 48 H 1.09000 * 111.15572 * 168.11264 * 27 11 10 49 49 H 1.08007 * 119.68529 * 180.25449 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5247 0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 0.0069 7 6 6.0565 1.8492 0.0016 8 6 7.5268 1.9811 0.0021 9 8 8.0382 3.0841 0.0021 10 7 8.3022 0.8788 0.0026 11 6 9.7613 1.0096 0.0037 12 6 10.2553 1.5768 1.3156 13 6 10.3561 0.3453 2.2627 14 6 10.0836 -0.8944 1.3725 15 6 10.4669 -0.3984 0.0041 16 1 11.5418 -0.2169 -0.0024 17 7 10.0991 -0.9389 -1.2644 18 6 9.8122 -2.2462 -1.5534 19 1 9.7356 -2.9712 -0.7566 20 6 9.6196 -2.6397 -2.8707 21 7 9.8555 -1.7941 -3.8512 22 14 9.0258 -4.3694 -3.2514 23 1 10.1933 -5.2428 -3.5330 24 1 8.2776 -4.9038 -2.0853 25 1 8.1345 -4.3366 -4.4387 26 6 10.0982 0.2143 -2.2126 27 6 10.2677 1.5026 -1.3435 28 6 5.4586 0.5886 0.0016 29 7 4.1476 0.4681 0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2115 3.6704 -0.0004 36 1 5.6710 3.9796 0.0115 37 1 7.8942 -0.0012 0.0022 38 1 11.2345 2.0377 1.1858 39 1 9.5433 2.3030 1.7078 40 1 11.3536 0.2871 2.6983 41 1 9.6061 0.4149 3.0506 42 1 9.0281 -1.1642 1.4082 43 1 10.7099 -1.7345 1.6726 44 1 9.7213 -2.0691 -4.7716 45 1 10.9276 0.1221 -2.9138 46 1 9.1529 0.2521 -2.7540 47 1 9.6510 2.3183 -1.7210 48 1 11.3150 1.7990 -1.2856 49 1 6.0772 -0.2968 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990971638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:07 Heat of formation + Delta-G solvation = -16.554655 kcal Electronic energy + Delta-G solvation = -31322.933974 eV Core-core repulsion = 27250.680809 eV Total energy + Delta-G solvation = -4072.253165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21642 -41.56594 -39.79344 -38.65040 -36.18175 -34.62410 -33.70745 -33.63737 -33.00250 -31.81207 -30.74323 -28.52440 -27.38690 -25.96817 -25.39390 -25.31641 -23.32133 -22.42325 -21.97161 -21.21369 -20.22652 -19.70134 -18.87338 -18.32154 -17.97979 -17.39252 -17.27977 -16.38798 -16.27122 -16.05584 -15.74960 -15.72066 -15.43016 -15.24917 -15.01300 -14.71146 -14.40771 -14.13864 -14.03799 -13.83860 -13.55270 -13.34275 -13.31395 -13.03697 -13.00994 -12.78447 -12.64848 -12.52385 -12.17281 -12.11225 -12.03424 -11.81533 -11.75669 -11.55492 -11.35067 -11.24783 -11.08604 -10.88577 -10.68678 -10.55530 -10.00179 -9.62241 -8.84944 -7.85436 -5.19532 -0.37307 0.09552 1.47790 1.48610 1.57274 1.84612 1.89526 2.21069 2.50854 2.75608 3.04241 3.12970 3.35970 3.63723 3.75301 3.78817 3.92151 3.94231 3.99170 4.06313 4.11736 4.18634 4.30383 4.39625 4.44059 4.44685 4.53454 4.58451 4.63521 4.66555 4.81804 4.85257 4.93865 4.96742 4.99180 5.02907 5.09377 5.14089 5.18632 5.25552 5.27619 5.31482 5.45697 5.57369 5.61798 5.68893 5.77620 6.07804 6.18306 6.58360 6.63039 7.04580 7.25522 7.77809 8.50658 9.28093 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.003892 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.583063 B = 7192.947787 C = 9203.215469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.330 3.670 5 C -0.190 4.190 6 C 0.016 3.984 7 C -0.232 4.232 8 C 0.568 3.432 9 O -0.569 6.569 10 N -0.685 5.685 11 C 0.140 3.860 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.146 3.854 16 H 0.018 0.982 17 N -0.596 5.596 18 C -0.232 4.232 19 H 0.090 0.910 20 C -0.060 4.060 21 N -0.950 5.950 22 Si 0.968 3.032 23 H -0.291 1.291 24 H -0.263 1.263 25 H -0.301 1.301 26 C 0.194 3.806 27 C -0.127 4.127 28 C 0.179 3.821 29 N -0.556 5.556 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.401 0.599 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.245 0.755 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.061 0.939 48 H 0.081 0.919 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.761 6.875 12.944 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.151 3.849 5 C -0.210 4.210 6 C -0.009 4.009 7 C -0.238 4.238 8 C 0.356 3.644 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.052 3.948 12 C -0.145 4.145 13 C -0.141 4.141 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.035 0.965 17 N -0.319 5.319 18 C -0.360 4.360 19 H 0.107 0.893 20 C -0.253 4.253 21 N -0.598 5.598 22 Si 0.797 3.203 23 H -0.218 1.218 24 H -0.188 1.188 25 H -0.228 1.228 26 C 0.069 3.931 27 C -0.166 4.166 28 C 0.021 3.979 29 N -0.280 5.280 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.193 0.807 36 H 0.183 0.817 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.049 6.824 12.767 19.490 hybrid contribution 0.263 -0.916 -1.217 1.546 sum -12.786 5.908 11.550 18.215 Atomic orbital electron populations 1.21832 0.90644 1.04281 1.03575 1.22863 0.96545 0.79902 1.02406 1.86204 1.16178 1.32212 1.86804 1.20367 0.84489 0.90478 0.89553 1.21291 0.95449 0.96137 1.08111 1.21678 0.91733 0.99396 0.88109 1.20840 0.94065 0.95910 1.13015 1.18033 0.86242 0.84263 0.75890 1.90707 1.75519 1.26452 1.52318 1.45651 1.06227 1.08602 1.73051 1.21510 0.79718 0.99360 0.94224 1.21864 1.01604 0.97976 0.93073 1.22541 1.02939 0.91625 0.96990 1.21638 1.01499 0.98580 0.93161 1.21037 0.95803 0.91443 0.87986 0.96509 1.43761 1.80296 1.03687 1.04131 1.19384 1.39794 0.84662 0.92182 0.89265 1.25545 1.02855 1.01221 0.95712 1.70134 1.55240 1.36052 0.98389 0.85213 0.77513 0.80132 0.77404 1.21848 1.18756 1.22846 1.21611 0.97487 0.83541 0.90447 1.22639 1.01059 0.97112 0.95754 1.22737 0.89304 0.96659 0.89202 1.67336 1.06339 1.33577 1.20707 0.88440 0.91101 0.91502 0.92227 0.91537 0.80665 0.81736 0.76188 0.90063 0.91469 0.89805 0.90409 0.91711 0.91070 0.94627 0.96908 0.97121 0.92045 0.90069 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.06 1.08 6.02 71.98 0.43 1.52 16 3 O -0.31 -6.93 10.10 -87.98 -0.89 -7.81 16 4 C 0.33 8.24 7.49 84.83 0.64 8.87 16 5 C -0.19 -4.05 10.02 22.43 0.22 -3.82 16 6 C 0.02 0.39 9.70 22.70 0.22 0.61 16 7 C -0.23 -6.63 5.89 -19.99 -0.12 -6.75 16 8 C 0.57 18.77 7.08 86.72 0.61 19.38 16 9 O -0.57 -21.08 14.56 -3.95 -0.06 -21.13 16 10 N -0.69 -22.86 4.32 -422.73 -1.83 -24.69 16 11 C 0.14 4.81 0.41 4.32 0.00 4.81 16 12 C -0.11 -3.01 6.05 30.94 0.19 -2.82 16 13 C -0.10 -2.45 6.90 32.22 0.22 -2.23 16 14 C -0.11 -3.27 6.37 30.49 0.19 -3.08 16 15 C 0.15 5.53 2.65 46.47 0.12 5.65 16 16 H 0.02 0.69 7.99 -2.38 -0.02 0.67 16 17 N -0.60 -28.36 3.12 -668.38 -2.08 -30.44 16 18 C -0.23 -12.03 10.27 84.04 0.86 -11.16 16 19 H 0.09 4.37 7.84 -2.91 -0.02 4.34 16 20 C -0.06 -3.27 5.46 84.86 0.46 -2.81 16 21 N -0.95 -56.18 10.76 21.65 0.23 -55.95 16 22 Si 0.97 44.36 29.56 68.60 2.03 46.39 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 C 0.19 9.46 5.29 86.99 0.46 9.92 16 27 C -0.13 -4.99 6.22 31.46 0.20 -4.79 16 28 C 0.18 5.00 10.71 85.03 0.91 5.91 16 29 N -0.56 -15.40 9.18 -307.81 -2.82 -18.23 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.17 3.54 7.73 -2.91 -0.02 3.52 16 37 H 0.40 13.35 5.81 -92.70 -0.54 12.81 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 1.98 6.84 -2.38 -0.02 1.97 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.90 7.31 -2.38 -0.02 1.89 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.24 14.28 8.31 -92.71 -0.77 13.50 16 45 H 0.01 0.70 7.56 -2.38 -0.02 0.69 16 46 H 0.01 0.58 7.69 -2.39 -0.02 0.56 16 47 H 0.06 2.50 7.17 -2.39 -0.02 2.48 16 48 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 49 H 0.17 4.44 6.41 -2.91 -0.02 4.42 16 Total: -1.00 -67.03 389.79 1.38 -65.65 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.42 Total: 28.07 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.37 Total: 18.14 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.50 Total: -129.30 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.95 Total: -28.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.03 1.38 -65.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990971638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.096 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds