Wall clock time and date at job start Wed Apr 1 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47406 * 2 1 4 4 C 1.35493 * 117.00260 * 180.02562 * 3 2 1 5 5 C 1.39162 * 119.52977 * 180.02562 * 4 3 2 6 6 C 1.37957 * 119.26786 * 180.02562 * 5 4 3 7 7 C 1.40281 * 118.35490 * 359.97438 * 6 5 4 8 8 C 1.47619 * 120.49992 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99637 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00323 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00385 * 180.02562 * 10 8 7 12 12 C 1.51225 * 111.06980 * 281.62477 * 11 10 8 13 13 C 1.55693 * 104.60421 * 275.45482 * 12 11 10 14 14 C 1.56278 * 105.93609 * 352.74847 * 13 12 11 15 15 C 1.50734 * 101.76307 * 335.53349 * 14 13 12 16 16 H 1.08998 * 108.20786 * 293.25913 * 15 14 13 17 17 N 1.42701 * 127.97599 * 160.93271 * 15 14 13 18 18 C 1.36937 * 127.10004 * 28.89649 * 17 15 14 19 19 H 1.07998 * 119.99941 * 352.43020 * 18 17 15 20 20 C 1.38813 * 119.99761 * 172.15030 * 18 17 15 21 21 N 1.31609 * 120.00242 * 5.68433 * 20 18 17 22 22 Si 1.86800 * 119.99689 * 185.68675 * 20 18 17 23 23 H 1.48499 * 109.47357 * 94.96010 * 22 20 18 24 24 H 1.48504 * 109.47058 * 214.96029 * 22 20 18 25 25 H 1.48503 * 109.47470 * 334.95596 * 22 20 18 26 26 C 1.49293 * 105.79612 * 208.63294 * 17 15 14 27 27 C 1.52143 * 111.08500 * 61.01415 * 11 10 8 28 28 C 1.39526 * 119.00636 * 0.25548 * 7 6 5 29 29 N 1.31665 * 120.62448 * 359.45550 * 28 7 6 30 30 H 1.09004 * 109.46591 * 299.99843 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99257 * 1 2 3 32 32 H 1.08996 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46591 * 240.00157 * 2 1 3 34 34 H 1.08998 * 109.47762 * 120.00421 * 2 1 3 35 35 H 1.08003 * 120.36421 * 0.02562 * 5 4 3 36 36 H 1.07996 * 120.82265 * 179.97438 * 6 5 4 37 37 H 0.97006 * 120.00082 * 0.02562 * 10 8 7 38 38 H 1.09004 * 110.40603 * 34.23848 * 12 11 10 39 39 H 1.08998 * 110.40955 * 156.55603 * 12 11 10 40 40 H 1.09004 * 110.15225 * 111.86776 * 13 12 11 41 41 H 1.08996 * 110.15645 * 233.62903 * 13 12 11 42 42 H 1.09004 * 110.97105 * 93.86110 * 14 13 12 43 43 H 1.09004 * 110.96804 * 217.58413 * 14 13 12 44 44 H 0.96999 * 120.00360 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.04891 * 128.16529 * 26 17 15 46 46 H 1.08998 * 110.04761 * 249.64176 * 26 17 15 47 47 H 1.08998 * 111.14752 * 316.72718 * 27 11 10 48 48 H 1.08992 * 111.18723 * 192.51547 * 27 11 10 49 49 H 1.07993 * 119.68817 * 179.72088 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 -0.0011 7 6 6.0565 1.8493 -0.0022 8 6 7.5268 1.9811 -0.0039 9 8 8.0382 3.0841 -0.0040 10 7 8.3022 0.8788 -0.0054 11 6 9.7613 1.0096 -0.0066 12 6 10.2762 1.3423 -1.3890 13 6 10.4067 -0.0358 -2.1016 14 6 10.1290 -1.1139 -1.0049 15 6 10.4847 -0.3684 0.2559 16 1 11.5574 -0.1751 0.2461 17 7 10.0999 -0.6748 1.5955 18 6 9.8206 -1.9118 2.1122 19 1 9.7625 -2.7696 1.4585 20 6 9.6180 -2.0643 3.4770 21 7 9.5830 -1.0065 4.2593 22 14 9.3950 -3.7708 4.2032 23 1 10.7016 -4.2722 4.6996 24 1 8.4290 -3.7072 5.3293 25 1 8.8768 -4.6898 3.1580 26 6 10.0709 0.6308 2.3188 27 6 10.2462 1.7426 1.2353 28 6 5.4587 0.5886 -0.0075 29 7 4.1476 0.4680 -0.0007 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.2115 3.6704 0.0012 36 1 5.6711 3.9796 -0.0012 37 1 7.8942 -0.0013 -0.0057 38 1 9.5648 1.9775 -1.9169 39 1 11.2476 1.8326 -1.3250 40 1 9.6710 -0.1158 -2.9020 41 1 11.4130 -0.1578 -2.5021 42 1 9.0796 -1.4089 -1.0046 43 1 10.7758 -1.9812 -1.1379 44 1 9.4417 -1.1130 5.2130 45 1 9.1159 0.7540 2.8295 46 1 10.8886 0.6778 3.0380 47 1 9.6176 2.6062 1.4527 48 1 11.2915 2.0350 1.1372 49 1 6.0772 -0.2967 -0.0129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990971641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:20 Heat of formation + Delta-G solvation = 3.564892 kcal Electronic energy + Delta-G solvation = -31321.916127 eV Core-core repulsion = 27250.535411 eV Total energy + Delta-G solvation = -4071.380716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.96417 -40.28054 -38.56771 -37.45252 -34.46581 -33.26441 -32.55855 -32.28690 -31.73492 -30.41765 -29.43118 -26.96330 -25.87086 -24.47800 -24.27264 -23.96703 -22.43906 -21.04506 -20.46382 -19.64789 -18.87410 -18.68746 -17.59775 -16.89392 -16.48518 -16.48324 -15.67866 -14.98104 -14.89532 -14.57896 -14.51931 -14.26907 -14.11736 -14.00466 -13.91897 -13.42758 -13.33231 -12.87172 -12.64926 -12.56968 -12.43041 -12.32551 -11.96493 -11.78541 -11.42034 -11.37142 -11.02782 -10.95980 -10.93633 -10.83373 -10.52559 -10.29018 -10.10433 -10.03929 -10.00261 -9.92934 -9.71499 -9.53452 -9.11718 -8.70278 -8.66388 -8.43384 -6.86748 -5.78558 -3.12367 0.73838 1.12479 2.80866 3.08456 3.36361 3.41752 3.44045 3.52385 3.91042 4.10247 4.43047 4.59810 4.76947 4.77971 4.78295 4.84816 4.95699 5.06524 5.18077 5.20152 5.24632 5.44339 5.45156 5.51054 5.58478 5.58816 5.67055 5.72188 5.80860 5.81380 5.92009 5.94059 6.08026 6.12862 6.21782 6.25660 6.28075 6.34656 6.40279 6.48118 6.66667 6.82789 6.88271 7.04723 7.16120 7.55211 7.55569 7.65463 7.75558 7.97539 8.17406 8.61599 9.10526 9.77384 10.47221 11.34596 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.003804 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.495516 B = 7358.359607 C = 9194.425409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.306 6.306 4 C 0.338 3.662 5 C -0.200 4.200 6 C 0.015 3.985 7 C -0.217 4.217 8 C 0.567 3.433 9 O -0.545 6.545 10 N -0.683 5.683 11 C 0.130 3.870 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.025 0.975 17 N -0.584 5.584 18 C -0.234 4.234 19 H 0.079 0.921 20 C -0.001 4.001 21 N -0.915 5.915 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.181 3.819 27 C -0.142 4.142 28 C 0.182 3.818 29 N -0.542 5.542 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.399 0.601 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 4.639 -11.974 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.213 6.213 4 C 0.159 3.841 5 C -0.221 4.221 6 C -0.011 4.011 7 C -0.223 4.223 8 C 0.354 3.646 9 O -0.424 6.424 10 N -0.333 5.333 11 C 0.043 3.957 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.155 4.155 15 C 0.049 3.951 16 H 0.042 0.958 17 N -0.307 5.307 18 C -0.362 4.362 19 H 0.097 0.903 20 C -0.198 4.198 21 N -0.561 5.561 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.057 3.943 27 C -0.181 4.181 28 C 0.025 3.975 29 N -0.266 5.266 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.240 4.639 -11.715 16.884 hybrid contribution 0.106 -0.853 0.636 1.070 sum -11.134 3.786 -11.078 16.156 Atomic orbital electron populations 1.21823 0.93008 1.02953 1.03230 1.22661 0.94703 0.80859 1.02935 1.86187 1.16908 1.31019 1.87147 1.20033 0.84016 0.90080 0.89957 1.21006 0.95580 0.95713 1.09787 1.21503 0.91406 0.99496 0.88694 1.20949 0.95273 0.94964 1.11114 1.17759 0.85388 0.84810 0.76687 1.90721 1.74821 1.25817 1.51050 1.45552 1.06428 1.08259 1.73032 1.21616 0.79258 1.01165 0.93689 1.21899 1.01145 0.96754 0.95264 1.22820 1.01019 0.94135 0.97521 1.21896 1.01267 0.97575 0.94714 1.20931 0.95971 0.91091 0.87103 0.95777 1.43654 1.79824 1.03538 1.03669 1.18991 1.42205 0.84096 0.90938 0.90329 1.24811 1.01797 0.97128 0.96095 1.69930 1.55128 1.26925 1.04104 0.86189 0.77454 0.83770 0.78853 1.21622 1.21835 1.20603 1.21961 1.01021 0.80468 0.90828 1.22832 1.00241 0.99494 0.95521 1.22702 0.89116 0.96613 0.89104 1.67341 1.06372 1.32754 1.20122 0.91639 0.91718 0.90234 0.91405 0.91249 0.83629 0.82879 0.76516 0.91701 0.91024 0.92211 0.91878 0.91809 0.91650 0.93669 0.92564 0.94299 0.90475 0.91674 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.64 6.02 37.16 0.22 0.86 16 3 O -0.31 -3.71 10.10 -18.17 -0.18 -3.90 16 4 C 0.34 4.50 7.49 -16.96 -0.13 4.37 16 5 C -0.20 -2.39 10.02 -39.34 -0.39 -2.78 16 6 C 0.01 0.19 9.70 -38.92 -0.38 -0.19 16 7 C -0.22 -3.22 5.89 -104.82 -0.62 -3.84 16 8 C 0.57 9.66 7.15 -12.44 -0.09 9.57 16 9 O -0.54 -10.47 14.54 5.29 0.08 -10.39 16 10 N -0.68 -11.56 4.48 -47.40 -0.21 -11.77 16 11 C 0.13 2.30 0.41 -130.51 -0.05 2.25 16 12 C -0.11 -1.68 6.16 -26.19 -0.16 -1.84 16 13 C -0.12 -1.55 6.93 -23.54 -0.16 -1.72 16 14 C -0.12 -1.83 6.46 -26.11 -0.17 -2.00 16 15 C 0.16 3.08 2.70 -68.42 -0.18 2.89 16 16 H 0.03 0.50 7.99 -51.93 -0.41 0.09 16 17 N -0.58 -13.82 3.17 -162.34 -0.51 -14.33 16 18 C -0.23 -6.09 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 21 N -0.91 -26.14 10.61 55.49 0.59 -25.55 16 22 Si 0.91 21.44 29.56 -169.99 -5.02 16.42 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.18 4.30 5.30 -0.76 0.00 4.30 16 27 C -0.14 -2.81 6.09 -25.43 -0.15 -2.96 16 28 C 0.18 2.59 10.71 -17.14 -0.18 2.41 16 29 N -0.54 -7.72 9.18 -12.97 -0.12 -7.84 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.15 1.83 7.73 -52.49 -0.41 1.42 16 37 H 0.40 6.54 5.66 -40.82 -0.23 6.30 16 38 H 0.06 1.00 7.73 -51.93 -0.40 0.59 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.99 7.20 -51.93 -0.37 0.62 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.06 1.50 7.34 -51.93 -0.38 1.12 16 46 H 0.04 1.02 7.80 -51.93 -0.41 0.61 16 47 H 0.08 1.59 6.27 -51.93 -0.33 1.27 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.16 2.15 6.41 -52.49 -0.34 1.81 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -30.76 389.74 -9.31 -40.07 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.47 Total: 7.18 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.32 Total: 4.24 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.26 Total: -59.49 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.11 Total: -14.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.76 -9.31 -40.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990971641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.633 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds