Wall clock time and date at job start Wed Apr 1 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47406 * 2 1 4 4 C 1.35493 * 117.00260 * 180.02562 * 3 2 1 5 5 C 1.39162 * 119.52977 * 180.02562 * 4 3 2 6 6 C 1.37957 * 119.26786 * 180.02562 * 5 4 3 7 7 C 1.40281 * 118.35490 * 359.97438 * 6 5 4 8 8 C 1.47619 * 120.49992 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99637 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00323 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00385 * 180.02562 * 10 8 7 12 12 C 1.51225 * 111.06980 * 281.62477 * 11 10 8 13 13 C 1.55693 * 104.60421 * 275.45482 * 12 11 10 14 14 C 1.56278 * 105.93609 * 352.74847 * 13 12 11 15 15 C 1.50734 * 101.76307 * 335.53349 * 14 13 12 16 16 H 1.08998 * 108.20786 * 293.25913 * 15 14 13 17 17 N 1.42701 * 127.97599 * 160.93271 * 15 14 13 18 18 C 1.36937 * 127.10004 * 28.89649 * 17 15 14 19 19 H 1.07998 * 119.99941 * 352.43020 * 18 17 15 20 20 C 1.38813 * 119.99761 * 172.15030 * 18 17 15 21 21 N 1.31609 * 120.00242 * 5.68433 * 20 18 17 22 22 Si 1.86800 * 119.99689 * 185.68675 * 20 18 17 23 23 H 1.48499 * 109.47357 * 94.96010 * 22 20 18 24 24 H 1.48504 * 109.47058 * 214.96029 * 22 20 18 25 25 H 1.48503 * 109.47470 * 334.95596 * 22 20 18 26 26 C 1.49293 * 105.79612 * 208.63294 * 17 15 14 27 27 C 1.52143 * 111.08500 * 61.01415 * 11 10 8 28 28 C 1.39526 * 119.00636 * 0.25548 * 7 6 5 29 29 N 1.31665 * 120.62448 * 359.45550 * 28 7 6 30 30 H 1.09004 * 109.46591 * 299.99843 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99257 * 1 2 3 32 32 H 1.08996 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46591 * 240.00157 * 2 1 3 34 34 H 1.08998 * 109.47762 * 120.00421 * 2 1 3 35 35 H 1.08003 * 120.36421 * 0.02562 * 5 4 3 36 36 H 1.07996 * 120.82265 * 179.97438 * 6 5 4 37 37 H 0.97006 * 120.00082 * 0.02562 * 10 8 7 38 38 H 1.09004 * 110.40603 * 34.23848 * 12 11 10 39 39 H 1.08998 * 110.40955 * 156.55603 * 12 11 10 40 40 H 1.09004 * 110.15225 * 111.86776 * 13 12 11 41 41 H 1.08996 * 110.15645 * 233.62903 * 13 12 11 42 42 H 1.09004 * 110.97105 * 93.86110 * 14 13 12 43 43 H 1.09004 * 110.96804 * 217.58413 * 14 13 12 44 44 H 0.96999 * 120.00360 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.04891 * 128.16529 * 26 17 15 46 46 H 1.08998 * 110.04761 * 249.64176 * 26 17 15 47 47 H 1.08998 * 111.14752 * 316.72718 * 27 11 10 48 48 H 1.08992 * 111.18723 * 192.51547 * 27 11 10 49 49 H 1.07993 * 119.68817 * 179.72088 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8710 2.8151 0.0000 6 6 5.2395 2.9896 -0.0011 7 6 6.0565 1.8493 -0.0022 8 6 7.5268 1.9811 -0.0039 9 8 8.0382 3.0841 -0.0040 10 7 8.3022 0.8788 -0.0054 11 6 9.7613 1.0096 -0.0066 12 6 10.2762 1.3423 -1.3890 13 6 10.4067 -0.0358 -2.1016 14 6 10.1290 -1.1139 -1.0049 15 6 10.4847 -0.3684 0.2559 16 1 11.5574 -0.1751 0.2461 17 7 10.0999 -0.6748 1.5955 18 6 9.8206 -1.9118 2.1122 19 1 9.7625 -2.7696 1.4585 20 6 9.6180 -2.0643 3.4770 21 7 9.5830 -1.0065 4.2593 22 14 9.3950 -3.7708 4.2032 23 1 10.7016 -4.2722 4.6996 24 1 8.4290 -3.7072 5.3293 25 1 8.8768 -4.6898 3.1580 26 6 10.0709 0.6308 2.3188 27 6 10.2462 1.7426 1.2353 28 6 5.4587 0.5886 -0.0075 29 7 4.1476 0.4680 -0.0007 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.2115 3.6704 0.0012 36 1 5.6711 3.9796 -0.0012 37 1 7.8942 -0.0013 -0.0057 38 1 9.5648 1.9775 -1.9169 39 1 11.2476 1.8326 -1.3250 40 1 9.6710 -0.1158 -2.9020 41 1 11.4130 -0.1578 -2.5021 42 1 9.0796 -1.4089 -1.0046 43 1 10.7758 -1.9812 -1.1379 44 1 9.4417 -1.1130 5.2130 45 1 9.1159 0.7540 2.8295 46 1 10.8886 0.6778 3.0380 47 1 9.6176 2.6062 1.4527 48 1 11.2915 2.0350 1.1372 49 1 6.0772 -0.2967 -0.0129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990971641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:18 Heat of formation + Delta-G solvation = -16.036297 kcal Electronic energy + Delta-G solvation = -31322.766099 eV Core-core repulsion = 27250.535411 eV Total energy + Delta-G solvation = -4072.230687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.18782 -41.53827 -39.77334 -38.64195 -36.16862 -34.57385 -33.70010 -33.63611 -33.00007 -31.81292 -30.72980 -28.52512 -27.33615 -25.96494 -25.38838 -25.31045 -23.31942 -22.43768 -21.92481 -21.22019 -20.24722 -19.70013 -18.87557 -18.32020 -17.97615 -17.38739 -17.26911 -16.36770 -16.24820 -16.05887 -15.77826 -15.70294 -15.43646 -15.22397 -15.01384 -14.69721 -14.40080 -14.12316 -14.01986 -13.83786 -13.55730 -13.34246 -13.30934 -13.01327 -12.96902 -12.84028 -12.62261 -12.52023 -12.16877 -12.09847 -12.02155 -11.78260 -11.74475 -11.55205 -11.33797 -11.27145 -11.08370 -10.85842 -10.69440 -10.54244 -9.98397 -9.61296 -8.83834 -7.84885 -5.19057 -0.36758 0.09741 1.47083 1.48358 1.56511 1.84775 1.89746 2.21603 2.50606 2.76172 3.04775 3.13793 3.37302 3.64617 3.75969 3.78817 3.91512 3.94470 3.99372 4.06798 4.13091 4.19037 4.31678 4.41045 4.44481 4.44995 4.53367 4.60180 4.64292 4.66642 4.82831 4.85411 4.94255 4.97647 4.99947 5.02820 5.11649 5.14243 5.18932 5.26319 5.27818 5.31724 5.50235 5.59124 5.60937 5.68423 5.79902 6.08212 6.19182 6.58383 6.63047 7.05225 7.26615 7.78218 8.51577 9.28226 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.003804 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.495516 B = 7358.359607 C = 9194.425409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.330 3.670 5 C -0.190 4.190 6 C 0.015 3.985 7 C -0.233 4.233 8 C 0.568 3.432 9 O -0.570 6.570 10 N -0.683 5.683 11 C 0.138 3.862 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.112 4.112 15 C 0.147 3.853 16 H 0.020 0.980 17 N -0.596 5.596 18 C -0.230 4.230 19 H 0.090 0.910 20 C -0.061 4.061 21 N -0.950 5.950 22 Si 0.969 3.031 23 H -0.292 1.292 24 H -0.302 1.302 25 H -0.263 1.263 26 C 0.194 3.806 27 C -0.131 4.131 28 C 0.180 3.820 29 N -0.555 5.555 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.244 0.756 45 H 0.018 0.982 46 H 0.002 0.998 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 4.154 -14.476 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.151 3.849 5 C -0.210 4.210 6 C -0.010 4.010 7 C -0.239 4.239 8 C 0.356 3.644 9 O -0.451 6.451 10 N -0.333 5.333 11 C 0.050 3.950 12 C -0.146 4.146 13 C -0.140 4.140 14 C -0.150 4.150 15 C 0.038 3.962 16 H 0.037 0.963 17 N -0.319 5.319 18 C -0.359 4.359 19 H 0.108 0.892 20 C -0.254 4.254 21 N -0.598 5.598 22 Si 0.798 3.202 23 H -0.220 1.220 24 H -0.229 1.229 25 H -0.187 1.187 26 C 0.070 3.930 27 C -0.170 4.170 28 C 0.022 3.978 29 N -0.279 5.279 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.193 0.807 36 H 0.181 0.819 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.021 0.979 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.267 4.135 -14.270 19.267 hybrid contribution 0.378 -0.685 1.418 1.619 sum -11.889 3.450 -12.852 17.845 Atomic orbital electron populations 1.21832 0.90657 1.04296 1.03552 1.22868 0.96535 0.79883 1.02431 1.86204 1.16153 1.32259 1.86804 1.20353 0.84500 0.90463 0.89557 1.21280 0.95406 0.96192 1.08167 1.21672 0.91795 0.99407 0.88175 1.20845 0.94049 0.95986 1.12971 1.18039 0.86278 0.84280 0.75852 1.90698 1.75493 1.26578 1.52350 1.45558 1.06195 1.08517 1.73018 1.21583 0.79713 0.99257 0.94398 1.21899 1.01428 0.98110 0.93148 1.22755 1.02993 0.91505 0.96764 1.21922 1.01545 0.98346 0.93217 1.21168 0.95703 0.93038 0.86336 0.96273 1.43767 1.79702 1.02777 1.05694 1.19398 1.40076 0.85304 0.91118 0.89186 1.25572 1.02867 1.00218 0.96790 1.70147 1.57260 1.28797 1.03642 0.85193 0.76737 0.80254 0.77983 1.21974 1.22930 1.18685 1.21604 0.97469 0.82476 0.91456 1.22673 1.01091 0.97729 0.95514 1.22741 0.89310 0.96615 0.89131 1.67343 1.06313 1.33500 1.20706 0.91567 0.91094 0.88390 0.91442 0.92244 0.80710 0.81879 0.76251 0.91680 0.90032 0.90156 0.89778 0.91613 0.90964 0.94696 0.96389 0.97933 0.91458 0.90258 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.06 1.09 6.02 71.98 0.43 1.52 16 3 O -0.31 -7.03 10.10 -87.93 -0.89 -7.92 16 4 C 0.33 8.39 7.49 84.83 0.64 9.02 16 5 C -0.19 -4.20 10.02 22.43 0.22 -3.98 16 6 C 0.02 0.37 9.70 22.70 0.22 0.60 16 7 C -0.23 -6.82 5.89 -19.99 -0.12 -6.93 16 8 C 0.57 19.28 7.15 86.72 0.62 19.90 16 9 O -0.57 -21.83 14.54 -3.98 -0.06 -21.88 16 10 N -0.68 -22.92 4.48 -422.13 -1.89 -24.81 16 11 C 0.14 4.78 0.41 4.46 0.00 4.78 16 12 C -0.11 -2.95 6.16 30.94 0.19 -2.76 16 13 C -0.10 -2.35 6.93 32.66 0.23 -2.12 16 14 C -0.11 -3.25 6.46 31.00 0.20 -3.05 16 15 C 0.15 5.53 2.70 46.67 0.13 5.66 16 16 H 0.02 0.78 7.99 -2.39 -0.02 0.76 16 17 N -0.60 -28.66 3.17 -667.52 -2.12 -30.78 16 18 C -0.23 -12.05 10.27 84.03 0.86 -11.18 16 19 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 21 N -0.95 -56.69 10.61 21.65 0.23 -56.46 16 22 Si 0.97 44.75 29.56 68.60 2.03 46.78 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.19 9.69 5.30 86.96 0.46 10.15 16 27 C -0.13 -5.28 6.09 31.43 0.19 -5.08 16 28 C 0.18 5.06 10.71 85.03 0.91 5.97 16 29 N -0.55 -15.47 9.18 -307.82 -2.83 -18.30 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.16 3.70 7.73 -2.91 -0.02 3.68 16 37 H 0.40 13.04 5.66 -92.70 -0.53 12.51 16 38 H 0.06 1.83 7.73 -2.38 -0.02 1.81 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.89 7.20 -2.39 -0.02 1.87 16 43 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.02 1.01 7.34 -2.39 -0.02 0.99 16 46 H 0.00 0.14 7.80 -2.39 -0.02 0.12 16 47 H 0.07 2.85 6.27 -2.39 -0.01 2.83 16 48 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 49 H 0.17 4.41 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -68.38 389.74 1.31 -67.07 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.44 Total: 27.82 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.39 Total: 18.49 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -6.60 Total: -130.35 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.95 Total: -29.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.38 1.31 -67.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990971641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.032 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds