Wall clock time and date at job start Wed Apr 1 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47220 * 2 1 4 4 C 1.35684 * 116.99871 * 179.97438 * 3 2 1 5 5 C 1.38901 * 119.61929 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94240 * 180.02562 * 5 4 3 7 7 C 1.48162 * 120.88786 * 180.02562 * 6 5 4 8 8 O 1.21519 * 120.00417 * 359.97303 * 7 6 5 9 9 N 1.34779 * 120.00117 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00029 * 179.97438 * 9 7 6 11 11 C 1.53585 * 112.24000 * 61.02048 * 10 9 7 12 12 C 1.54226 * 106.67452 * 121.16500 * 11 10 9 13 13 C 1.54759 * 104.15391 * 24.94471 * 12 11 10 14 14 C 1.54763 * 103.21524 * 322.18678 * 13 12 11 15 15 H 1.09001 * 111.42382 * 275.31290 * 14 13 12 16 16 N 1.46978 * 109.16487 * 150.41102 * 14 13 12 17 17 C 1.36935 * 125.58173 * 65.66184 * 16 14 13 18 18 H 1.07996 * 119.99956 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31629 * 119.99708 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99985 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46721 * 120.00007 * 21 19 17 24 24 H 1.48498 * 109.47054 * 239.99962 * 21 19 17 25 25 C 1.47378 * 108.83650 * 245.64359 * 16 14 13 26 26 C 1.54916 * 112.33666 * 297.64965 * 10 9 7 27 27 C 1.39960 * 118.22042 * 359.97438 * 6 5 4 28 28 C 1.37982 * 119.13554 * 0.02562 * 27 6 5 29 29 N 1.31905 * 120.97476 * 0.26140 * 28 27 6 30 30 H 1.09004 * 109.46964 * 60.00845 * 1 2 3 31 31 H 1.09006 * 109.46845 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47421 * 300.00334 * 1 2 3 33 33 H 1.09001 * 109.47626 * 239.99264 * 2 1 3 34 34 H 1.09010 * 109.47167 * 119.99554 * 2 1 3 35 35 H 1.08000 * 120.52500 * 0.03897 * 5 4 3 36 36 H 0.97003 * 119.99676 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.01891 * 240.46770 * 11 10 9 38 38 H 1.09003 * 110.01606 * 1.81948 * 11 10 9 39 39 H 1.09005 * 110.49345 * 143.61143 * 12 11 10 40 40 H 1.09000 * 110.49585 * 266.27769 * 12 11 10 41 41 H 1.09007 * 110.66849 * 80.62331 * 13 12 11 42 42 H 1.09003 * 110.66805 * 203.58301 * 13 12 11 43 43 H 0.97001 * 119.99414 * 179.97438 * 20 19 17 44 44 H 1.09008 * 110.36579 * 143.52683 * 25 16 14 45 45 H 1.08995 * 110.36760 * 265.84981 * 25 16 14 46 46 H 1.08997 * 110.96714 * 31.90744 * 26 10 9 47 47 H 1.09000 * 110.96748 * 155.66474 * 26 10 9 48 48 H 1.08000 * 120.43152 * 179.97438 * 27 6 5 49 49 H 1.08002 * 119.50997 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8739 2.8120 0.0011 6 6 5.2596 2.9785 0.0011 7 6 5.8632 4.3316 0.0023 8 8 5.1496 5.3152 0.0027 9 7 7.2036 4.4716 0.0028 10 6 7.8004 5.8096 0.0034 11 6 7.4077 6.6207 1.2471 12 6 8.7207 6.9930 1.9653 13 6 9.7864 6.9668 0.8433 14 6 9.3508 5.7659 -0.0303 15 1 9.7400 4.8263 0.3619 16 7 9.7593 6.0079 -1.4213 17 6 11.0506 6.0876 -1.8701 18 1 11.8711 5.9692 -1.1780 19 6 11.3049 6.3219 -3.2146 20 7 10.3048 6.4667 -4.0580 21 14 13.0664 6.4314 -3.8267 22 1 13.9992 6.2357 -2.6879 23 1 13.3021 5.3785 -4.8470 24 1 13.2979 7.7677 -4.4316 25 6 8.5517 6.1501 -2.2540 26 6 7.4333 6.6185 -1.2658 27 6 6.0638 1.8330 0.0011 28 6 5.4634 0.5906 0.0005 29 7 4.1497 0.4715 -0.0051 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2182 3.6702 0.0018 36 1 7.7733 3.6864 0.0020 37 1 6.8755 7.5244 0.9504 38 1 6.7808 6.0171 1.9035 39 1 8.6486 7.9901 2.3998 40 1 8.9574 6.2570 2.7337 41 1 9.7608 7.8915 0.2667 42 1 10.7800 6.8023 1.2603 43 1 10.4825 6.6307 -4.9974 44 1 8.7108 6.9012 -3.0279 45 1 8.2850 5.1930 -2.7022 46 1 6.4411 6.3484 -1.6270 47 1 7.5002 7.6901 -1.0782 48 1 7.1403 1.9203 0.0007 49 1 6.0781 -0.2973 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992191730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:36 Heat of formation + Delta-G solvation = -6.914077 kcal Electronic energy + Delta-G solvation = -30692.145747 eV Core-core repulsion = 26620.310629 eV Total energy + Delta-G solvation = -4071.835118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.03625 -40.09236 -38.51875 -37.69947 -34.31635 -33.70485 -32.69172 -32.32461 -31.38548 -30.14975 -29.66517 -26.77164 -26.35694 -24.89451 -23.89131 -23.52502 -23.09095 -21.29375 -20.09210 -19.96527 -18.93958 -18.49403 -17.37232 -17.08259 -16.54498 -16.42031 -15.84584 -15.52897 -15.05534 -14.81423 -14.79532 -14.22551 -14.13788 -14.00253 -13.90227 -13.53776 -13.22555 -12.91623 -12.83318 -12.59444 -12.27446 -12.16710 -11.87106 -11.80819 -11.71950 -11.20747 -11.04771 -11.01619 -10.88331 -10.71679 -10.56692 -10.30112 -10.14804 -10.09121 -10.01306 -9.98938 -9.77698 -9.66635 -9.45999 -8.75556 -8.69681 -8.63162 -6.89496 -5.67962 -3.11573 0.56948 0.93253 2.65939 2.91393 3.27135 3.36830 3.42415 3.44941 3.70244 4.04300 4.43439 4.49084 4.70806 4.70825 4.77347 4.78905 4.86681 4.96218 5.08434 5.12134 5.27568 5.35689 5.48452 5.49189 5.52042 5.58584 5.60723 5.72526 5.78568 5.82168 5.87359 5.95050 6.04262 6.09351 6.10916 6.19425 6.32084 6.37773 6.50627 6.55112 6.73188 6.74340 6.93919 7.00228 7.05894 7.50741 7.55719 7.61357 7.66783 7.84650 8.30858 8.33567 9.17994 9.78805 10.42585 11.34495 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002589 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.363430 B =10814.262058 C =11681.063145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.319 3.681 5 C -0.134 4.134 6 C -0.046 4.046 7 C 0.556 3.444 8 O -0.523 6.523 9 N -0.693 5.693 10 C 0.160 3.840 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.130 4.130 14 C 0.163 3.837 15 H 0.046 0.954 16 N -0.595 5.595 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.153 3.847 26 C -0.144 4.144 27 C -0.180 4.180 28 C 0.137 3.863 29 N -0.530 5.530 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.251 0.749 44 H 0.108 0.892 45 H 0.010 0.990 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.143 0.857 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 -11.157 10.957 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.140 3.860 5 C -0.155 4.155 6 C -0.057 4.057 7 C 0.342 3.658 8 O -0.400 6.400 9 N -0.343 5.343 10 C 0.074 3.926 11 C -0.151 4.151 12 C -0.163 4.163 13 C -0.170 4.170 14 C 0.055 3.945 15 H 0.063 0.937 16 N -0.318 5.318 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.029 3.971 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.018 4.018 29 N -0.255 5.255 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.172 0.828 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.028 0.972 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.161 0.839 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.957 -11.035 10.718 20.771 hybrid contribution 1.635 0.061 -0.399 1.684 sum -12.321 -10.973 10.319 19.460 Atomic orbital electron populations 1.21827 0.92983 1.02873 1.03440 1.22615 0.94774 0.80970 1.02530 1.86254 1.16538 1.30733 1.87733 1.19623 0.84182 0.89486 0.92752 1.21127 0.94649 0.96358 1.03395 1.20262 0.93246 0.94218 0.97959 1.17987 0.82676 0.87781 0.77386 1.90775 1.61106 1.39118 1.48962 1.45815 1.05635 1.09496 1.73348 1.21736 0.93461 0.81147 0.96269 1.22291 0.97176 0.99865 0.95746 1.22364 0.95422 1.00576 0.97899 1.22944 0.97289 1.00673 0.96111 1.21753 0.89070 0.95793 0.87894 0.93696 1.44496 1.02566 1.83646 1.01139 1.19072 0.81960 1.41569 0.92237 0.90408 1.24800 0.97574 1.02271 0.95977 1.69815 1.28280 1.55804 1.02871 0.86020 0.83741 0.77303 0.78545 1.20541 1.21831 1.21772 1.22251 0.82245 0.99764 0.92863 1.23613 1.00307 0.98736 0.95706 1.22222 1.01497 0.92700 1.03698 1.22357 0.88899 0.97263 0.93276 1.67193 1.06874 1.33319 1.18095 0.91549 0.90295 0.91612 0.91537 0.91610 0.82825 0.76463 0.91015 0.92286 0.92156 0.92322 0.90703 0.92268 0.93762 0.87400 0.97223 0.91319 0.91189 0.83884 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.07 0.59 6.03 37.16 0.22 0.81 16 3 O -0.31 -3.61 10.11 -18.75 -0.19 -3.80 16 4 C 0.32 4.03 7.49 -17.16 -0.13 3.90 16 5 C -0.13 -1.78 9.61 -38.84 -0.37 -2.15 16 6 C -0.05 -0.61 5.91 -104.68 -0.62 -1.23 16 7 C 0.56 8.72 6.96 -12.18 -0.08 8.64 16 8 O -0.52 -9.63 14.25 5.35 0.08 -9.56 16 9 N -0.69 -10.62 5.19 -46.18 -0.24 -10.86 16 10 C 0.16 2.79 0.73 -129.37 -0.09 2.69 16 11 C -0.11 -1.77 5.27 -25.79 -0.14 -1.91 16 12 C -0.12 -1.80 6.84 -25.16 -0.17 -1.97 16 13 C -0.13 -2.27 6.25 -24.88 -0.16 -2.43 16 14 C 0.16 3.13 3.63 -65.61 -0.24 2.89 16 15 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16 16 N -0.59 -14.22 3.05 -160.14 -0.49 -14.71 16 17 C -0.22 -5.79 10.02 -15.06 -0.15 -5.94 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.29 5.49 -17.42 -0.10 -0.38 16 20 N -0.92 -26.21 10.07 55.49 0.56 -25.65 16 21 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.15 3.67 5.95 -1.72 -0.01 3.66 16 26 C -0.14 -2.90 5.85 -23.88 -0.14 -3.04 16 27 C -0.18 -1.93 9.61 -39.03 -0.38 -2.30 16 28 C 0.14 1.37 11.17 -17.61 -0.20 1.17 16 29 N -0.53 -6.24 9.18 -13.38 -0.12 -6.36 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.56 8.11 -51.92 -0.42 0.14 16 35 H 0.15 2.05 7.74 -52.49 -0.41 1.65 16 36 H 0.40 5.32 6.64 -40.82 -0.27 5.05 16 37 H 0.07 1.18 7.37 -51.93 -0.38 0.79 16 38 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.11 2.94 5.83 -51.92 -0.30 2.64 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 1.41 6.65 -51.93 -0.35 1.06 16 47 H 0.07 1.40 7.63 -51.93 -0.40 1.01 16 48 H 0.14 1.24 6.53 -52.49 -0.34 0.89 16 49 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -31.13 389.17 -9.37 -40.50 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.44 Total: 6.27 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.36 Total: 1.81 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.29 Total: -57.58 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.11 Total: -13.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.13 -9.37 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992191730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.583 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds