Wall clock time and date at job start Wed Apr 1 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47220 * 2 1 4 4 C 1.35684 * 116.99871 * 179.97438 * 3 2 1 5 5 C 1.38901 * 119.61929 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94240 * 180.02562 * 5 4 3 7 7 C 1.48162 * 120.88786 * 180.02562 * 6 5 4 8 8 O 1.21519 * 120.00417 * 359.97303 * 7 6 5 9 9 N 1.34779 * 120.00117 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00029 * 179.97438 * 9 7 6 11 11 C 1.53585 * 112.24000 * 61.02048 * 10 9 7 12 12 C 1.54226 * 106.67452 * 121.16500 * 11 10 9 13 13 C 1.54759 * 104.15391 * 24.94471 * 12 11 10 14 14 C 1.54763 * 103.21524 * 322.18678 * 13 12 11 15 15 H 1.09001 * 111.42382 * 275.31290 * 14 13 12 16 16 N 1.46978 * 109.16487 * 150.41102 * 14 13 12 17 17 C 1.36935 * 125.58173 * 65.66184 * 16 14 13 18 18 H 1.07996 * 119.99956 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31629 * 119.99708 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99985 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46721 * 120.00007 * 21 19 17 24 24 H 1.48498 * 109.47054 * 239.99962 * 21 19 17 25 25 C 1.47378 * 108.83650 * 245.64359 * 16 14 13 26 26 C 1.54916 * 112.33666 * 297.64965 * 10 9 7 27 27 C 1.39960 * 118.22042 * 359.97438 * 6 5 4 28 28 C 1.37982 * 119.13554 * 0.02562 * 27 6 5 29 29 N 1.31905 * 120.97476 * 0.26140 * 28 27 6 30 30 H 1.09004 * 109.46964 * 60.00845 * 1 2 3 31 31 H 1.09006 * 109.46845 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47421 * 300.00334 * 1 2 3 33 33 H 1.09001 * 109.47626 * 239.99264 * 2 1 3 34 34 H 1.09010 * 109.47167 * 119.99554 * 2 1 3 35 35 H 1.08000 * 120.52500 * 0.03897 * 5 4 3 36 36 H 0.97003 * 119.99676 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.01891 * 240.46770 * 11 10 9 38 38 H 1.09003 * 110.01606 * 1.81948 * 11 10 9 39 39 H 1.09005 * 110.49345 * 143.61143 * 12 11 10 40 40 H 1.09000 * 110.49585 * 266.27769 * 12 11 10 41 41 H 1.09007 * 110.66849 * 80.62331 * 13 12 11 42 42 H 1.09003 * 110.66805 * 203.58301 * 13 12 11 43 43 H 0.97001 * 119.99414 * 179.97438 * 20 19 17 44 44 H 1.09008 * 110.36579 * 143.52683 * 25 16 14 45 45 H 1.08995 * 110.36760 * 265.84981 * 25 16 14 46 46 H 1.08997 * 110.96714 * 31.90744 * 26 10 9 47 47 H 1.09000 * 110.96748 * 155.66474 * 26 10 9 48 48 H 1.08000 * 120.43152 * 179.97438 * 27 6 5 49 49 H 1.08002 * 119.50997 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8739 2.8120 0.0011 6 6 5.2596 2.9785 0.0011 7 6 5.8632 4.3316 0.0023 8 8 5.1496 5.3152 0.0027 9 7 7.2036 4.4716 0.0028 10 6 7.8004 5.8096 0.0034 11 6 7.4077 6.6207 1.2471 12 6 8.7207 6.9930 1.9653 13 6 9.7864 6.9668 0.8433 14 6 9.3508 5.7659 -0.0303 15 1 9.7400 4.8263 0.3619 16 7 9.7593 6.0079 -1.4213 17 6 11.0506 6.0876 -1.8701 18 1 11.8711 5.9692 -1.1780 19 6 11.3049 6.3219 -3.2146 20 7 10.3048 6.4667 -4.0580 21 14 13.0664 6.4314 -3.8267 22 1 13.9992 6.2357 -2.6879 23 1 13.3021 5.3785 -4.8470 24 1 13.2979 7.7677 -4.4316 25 6 8.5517 6.1501 -2.2540 26 6 7.4333 6.6185 -1.2658 27 6 6.0638 1.8330 0.0011 28 6 5.4634 0.5906 0.0005 29 7 4.1497 0.4715 -0.0051 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2182 3.6702 0.0018 36 1 7.7733 3.6864 0.0020 37 1 6.8755 7.5244 0.9504 38 1 6.7808 6.0171 1.9035 39 1 8.6486 7.9901 2.3998 40 1 8.9574 6.2570 2.7337 41 1 9.7608 7.8915 0.2667 42 1 10.7800 6.8023 1.2603 43 1 10.4825 6.6307 -4.9974 44 1 8.7108 6.9012 -3.0279 45 1 8.2850 5.1930 -2.7022 46 1 6.4411 6.3484 -1.6270 47 1 7.5002 7.6901 -1.0782 48 1 7.1403 1.9203 0.0007 49 1 6.0781 -0.2973 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992191730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:35 Heat of formation + Delta-G solvation = -27.194357 kcal Electronic energy + Delta-G solvation = -30693.025166 eV Core-core repulsion = 26620.310629 eV Total energy + Delta-G solvation = -4072.714537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08340 -41.33776 -39.72487 -38.76901 -36.05945 -34.99560 -33.75328 -33.25458 -32.98304 -31.43330 -30.85737 -28.42344 -27.77880 -25.94637 -25.72375 -24.42011 -23.91950 -22.62850 -21.65860 -21.24738 -20.31314 -19.65913 -18.90058 -18.31026 -17.65073 -17.34576 -16.92549 -16.85342 -16.68540 -16.22277 -15.88287 -15.67940 -15.14140 -15.12852 -14.86380 -14.82456 -14.71297 -14.47395 -13.93507 -13.54154 -13.45496 -13.33101 -13.18639 -13.04307 -12.91473 -12.81132 -12.66289 -12.48631 -12.32570 -11.98242 -11.90034 -11.74329 -11.71233 -11.64319 -11.49515 -11.24619 -11.19492 -11.06861 -10.72519 -10.69447 -10.03570 -9.62625 -8.85783 -7.72669 -5.17547 -0.43138 0.05067 1.49091 1.49931 1.59710 1.71502 1.78762 2.16333 2.51830 2.73296 3.22326 3.32603 3.37015 3.52759 3.63674 3.85201 3.92159 3.92750 3.95615 4.02444 4.09112 4.17955 4.36719 4.39454 4.45595 4.47133 4.56764 4.59663 4.64448 4.70738 4.80360 4.82205 4.86769 4.94756 4.95071 4.97692 5.09389 5.16338 5.18509 5.22329 5.29703 5.33372 5.48533 5.52543 5.63499 5.66116 5.84293 6.16545 6.32015 6.44568 6.68192 7.08269 7.13054 7.81398 8.45163 9.28776 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002589 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.363430 B =10814.262058 C =11681.063145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.319 6.319 4 C 0.311 3.689 5 C -0.150 4.150 6 C -0.058 4.058 7 C 0.558 3.442 8 O -0.556 6.556 9 N -0.688 5.688 10 C 0.169 3.831 11 C -0.107 4.107 12 C -0.109 4.109 13 C -0.126 4.126 14 C 0.156 3.844 15 H 0.063 0.937 16 N -0.610 5.610 17 C -0.219 4.219 18 H 0.088 0.912 19 C -0.071 4.071 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.297 1.297 24 H -0.298 1.298 25 C 0.163 3.837 26 C -0.133 4.133 27 C -0.172 4.172 28 C 0.145 3.855 29 N -0.533 5.533 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.411 0.589 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.243 0.757 44 H 0.071 0.929 45 H -0.016 1.016 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.167 0.833 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 -13.063 13.283 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.227 6.227 4 C 0.132 3.868 5 C -0.172 4.172 6 C -0.069 4.069 7 C 0.345 3.655 8 O -0.434 6.434 9 N -0.339 5.339 10 C 0.083 3.917 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.049 3.951 15 H 0.080 0.920 16 N -0.334 5.334 17 C -0.348 4.348 18 H 0.106 0.894 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.225 1.225 25 C 0.038 3.962 26 C -0.172 4.172 27 C -0.193 4.193 28 C -0.011 4.011 29 N -0.258 5.258 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.249 0.751 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.002 0.998 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.184 0.816 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.191 -12.968 13.097 22.665 hybrid contribution 1.361 0.587 -1.120 1.858 sum -11.830 -12.381 11.977 20.897 Atomic orbital electron populations 1.21852 0.91211 1.04340 1.03242 1.22851 0.96178 0.79706 1.02621 1.86247 1.16283 1.32558 1.87615 1.19661 0.84713 0.89405 0.92989 1.21085 0.94793 0.96572 1.04724 1.20091 0.93455 0.93645 0.99708 1.18319 0.82395 0.88486 0.76321 1.90755 1.61773 1.40500 1.50420 1.45700 1.05817 1.09108 1.73231 1.21546 0.92518 0.82058 0.95602 1.22232 0.98130 0.99239 0.94956 1.22305 0.92866 1.02473 0.97081 1.22814 0.98930 0.98341 0.96512 1.22018 0.90141 0.97238 0.85699 0.91974 1.44669 1.01828 1.83694 1.03187 1.19442 0.83256 1.39750 0.92373 0.89444 1.25597 1.01025 1.03197 0.96510 1.70073 1.30027 1.57561 1.02574 0.85030 0.79984 0.76377 0.78086 1.18680 1.22417 1.22536 1.21889 0.83911 0.97295 0.93102 1.23413 0.98388 0.99036 0.96385 1.22491 1.02430 0.92015 1.02351 1.23037 0.88527 0.98327 0.91193 1.67300 1.07689 1.32847 1.17991 0.91894 0.87958 0.91642 0.91606 0.91255 0.84000 0.75121 0.91888 0.91489 0.90378 0.89821 0.93292 0.91278 0.94676 0.91142 0.99779 0.92024 0.91446 0.81578 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.06 1.02 6.03 71.98 0.43 1.46 16 3 O -0.32 -7.51 10.11 -90.02 -0.91 -8.42 16 4 C 0.31 7.71 7.49 84.80 0.63 8.34 16 5 C -0.15 -4.02 9.61 22.75 0.22 -3.80 16 6 C -0.06 -1.50 5.91 -19.90 -0.12 -1.62 16 7 C 0.56 17.26 6.96 86.88 0.61 17.86 16 8 O -0.56 -20.71 14.25 -3.77 -0.05 -20.77 16 9 N -0.69 -20.24 5.19 -418.31 -2.17 -22.41 16 10 C 0.17 5.75 0.73 5.19 0.00 5.75 16 11 C -0.11 -3.17 5.27 31.21 0.16 -3.01 16 12 C -0.11 -2.80 6.84 31.61 0.22 -2.58 16 13 C -0.13 -4.14 6.25 31.80 0.20 -3.95 16 14 C 0.16 5.75 3.63 46.24 0.17 5.92 16 15 H 0.06 2.13 7.99 -2.39 -0.02 2.11 16 16 N -0.61 -29.30 3.05 -660.57 -2.02 -31.32 16 17 C -0.22 -11.52 10.02 84.04 0.84 -10.67 16 18 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -56.30 10.07 21.65 0.22 -56.08 16 21 Si 0.98 44.65 29.55 68.60 2.03 46.68 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 C 0.16 8.13 5.95 87.40 0.52 8.65 16 26 C -0.13 -5.47 5.85 32.44 0.19 -5.28 16 27 C -0.17 -3.27 9.61 22.63 0.22 -3.05 16 28 C 0.14 2.45 11.17 84.62 0.94 3.39 16 29 N -0.53 -11.58 9.18 -309.13 -2.84 -14.42 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.07 1.09 8.11 -2.38 -0.02 1.07 16 35 H 0.14 4.02 7.74 -2.91 -0.02 4.00 16 36 H 0.41 10.08 6.64 -92.71 -0.62 9.46 16 37 H 0.06 2.00 7.37 -2.39 -0.02 1.98 16 38 H 0.07 1.92 7.49 -2.39 -0.02 1.90 16 39 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.86 8.10 -2.38 -0.02 1.85 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.07 4.07 5.83 -2.38 -0.01 4.06 16 45 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 46 H 0.06 2.61 6.65 -2.39 -0.02 2.60 16 47 H 0.07 2.78 7.63 -2.39 -0.02 2.76 16 48 H 0.17 2.31 6.53 -2.91 -0.02 2.29 16 49 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -69.86 389.17 1.05 -68.81 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.35 Total: 24.97 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.45 Total: 12.96 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -6.81 Total: -124.23 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.96 Total: -29.19 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.86 1.05 -68.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992191730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.615 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds