Wall clock time and date at job start Wed Apr 1 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.46713 * 2 1 4 4 C 1.35425 * 116.99812 * 179.97438 * 3 2 1 5 5 N 1.32235 * 119.80072 * 359.97438 * 4 3 2 6 6 C 1.31882 * 121.80066 * 179.97438 * 5 4 3 7 7 C 1.38349 * 121.18917 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45553 * 359.70185 * 7 6 5 9 9 C 1.39992 * 118.35053 * 0.55593 * 8 7 6 10 10 C 1.47518 * 120.59974 * 179.71458 * 9 8 7 11 11 O 1.21586 * 120.00105 * 179.72706 * 10 9 8 12 12 N 1.34778 * 119.99901 * 359.72716 * 10 9 8 13 13 C 1.46505 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.53579 * 112.24427 * 300.35328 * 13 12 10 15 15 C 1.54225 * 106.67681 * 238.83027 * 14 13 12 16 16 C 1.56754 * 104.50469 * 335.25065 * 15 14 13 17 17 C 1.54770 * 102.29437 * 37.30667 * 16 15 14 18 18 H 1.09002 * 111.86508 * 85.86305 * 17 16 15 19 19 N 1.46975 * 108.68688 * 209.81144 * 17 16 15 20 20 C 1.36945 * 125.58019 * 295.04527 * 19 17 16 21 21 H 1.08001 * 119.99621 * 14.74854 * 20 19 17 22 22 C 1.38805 * 119.99903 * 194.75248 * 20 19 17 23 23 N 1.31625 * 119.99959 * 203.50817 * 22 20 19 24 24 Si 1.86796 * 120.00390 * 23.77863 * 22 20 19 25 25 H 1.48504 * 109.47420 * 269.72569 * 24 22 20 26 26 H 1.48497 * 109.47121 * 29.72343 * 24 22 20 27 27 H 1.48503 * 109.47559 * 149.72624 * 24 22 20 28 28 C 1.47369 * 108.84288 * 115.31295 * 19 17 16 29 29 C 1.54920 * 112.33237 * 64.35969 * 13 12 10 30 30 H 1.09001 * 109.47285 * 60.00076 * 1 2 3 31 31 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47116 * 299.99788 * 1 2 3 33 33 H 1.08999 * 109.47116 * 240.00212 * 2 1 3 34 34 H 1.09002 * 109.47079 * 120.00436 * 2 1 3 35 35 H 1.08002 * 119.40408 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.27448 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.82684 * 180.27644 * 8 7 6 38 38 H 0.96998 * 120.00153 * 359.97438 * 12 10 9 39 39 H 1.09009 * 110.01811 * 358.13001 * 14 13 12 40 40 H 1.08996 * 110.01946 * 119.47876 * 14 13 12 41 41 H 1.09001 * 110.49140 * 93.72097 * 15 14 13 42 42 H 1.08990 * 110.49206 * 216.25613 * 15 14 13 43 43 H 1.09002 * 111.09610 * 279.18714 * 16 15 14 44 44 H 1.08999 * 111.11538 * 155.43477 * 16 15 14 45 45 H 0.97003 * 119.99842 * 354.90902 * 23 22 20 46 46 H 1.09004 * 110.37062 * 93.91209 * 28 19 17 47 47 H 1.09000 * 110.37189 * 216.24220 * 28 19 17 48 48 H 1.08994 * 110.96578 * 204.32732 * 29 13 12 49 49 H 1.09001 * 110.96673 * 328.05785 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4634 0.6004 0.0016 7 6 6.0625 1.8475 0.0011 8 6 5.2713 2.9823 -0.0057 9 6 3.8805 2.8230 0.0001 10 6 2.9899 3.9990 -0.0004 11 8 1.7835 3.8481 -0.0004 12 7 3.5137 5.2409 -0.0009 13 6 2.6292 6.4088 -0.0020 14 6 1.7062 6.4380 -1.2291 15 6 1.9993 7.7572 -1.9722 16 6 2.5699 8.7117 -0.8674 17 6 3.4155 7.7463 -0.0024 18 1 4.4242 7.6252 -0.3973 19 7 3.4264 8.2409 1.3816 20 6 3.9877 9.4168 1.8030 21 1 4.2595 10.1741 1.0826 22 6 4.2072 9.6353 3.1561 23 7 4.2965 10.8645 3.6182 24 14 4.3836 8.1849 4.3199 25 1 3.0489 7.8154 4.8561 26 1 4.9598 7.0292 3.5868 27 1 5.2821 8.5571 5.4422 28 6 2.7402 7.2614 2.2426 29 6 1.7789 6.5045 1.2895 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 6.0819 -0.2850 0.0029 36 1 7.1390 1.9344 0.0016 37 1 5.7155 3.9667 -0.0107 38 1 4.4762 5.3613 -0.0005 39 1 1.9209 5.5887 -1.8778 40 1 0.6636 6.4110 -0.9124 41 1 2.7437 7.5984 -2.7524 42 1 1.0834 8.1672 -2.3975 43 1 1.7667 9.1535 -0.2776 44 1 3.1986 9.4872 -1.3049 45 1 4.2830 11.6156 3.0045 46 1 3.4612 6.5728 2.6832 47 1 2.1759 7.7718 3.0231 48 1 0.8675 7.0761 1.1148 49 1 1.5469 5.5129 1.6780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992468632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:46 Heat of formation + Delta-G solvation = -5.218736 kcal Electronic energy + Delta-G solvation = -31641.798572 eV Core-core repulsion = 27570.036969 eV Total energy + Delta-G solvation = -4071.761603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12115 -40.03552 -38.24472 -37.95320 -34.41995 -33.74529 -32.67773 -32.22073 -31.81519 -30.38146 -29.69626 -27.11834 -26.33377 -24.88232 -23.98073 -23.27976 -22.48031 -21.56441 -20.61391 -19.72599 -19.08158 -18.60173 -17.49865 -17.44641 -16.99137 -16.49018 -15.92869 -15.19457 -15.16627 -14.93820 -14.71862 -14.30506 -14.07518 -13.89102 -13.74796 -13.55141 -13.26168 -13.04767 -12.84859 -12.72511 -12.55263 -12.53922 -11.97469 -11.79474 -11.68509 -11.57374 -11.15457 -10.95579 -10.87718 -10.78233 -10.65983 -10.26984 -10.19130 -10.15787 -10.15008 -9.98655 -9.57392 -9.46304 -9.22593 -8.81593 -8.62517 -8.48876 -7.08004 -6.30253 -3.21410 0.48072 0.99463 2.80491 2.91419 3.21387 3.43936 3.50404 3.66293 3.69070 3.99909 4.46598 4.56231 4.59415 4.66487 4.76412 4.83500 4.86131 4.94015 4.95846 5.16079 5.16593 5.23171 5.25044 5.47983 5.51183 5.55691 5.59902 5.67403 5.71324 5.74692 5.77771 5.90583 5.96809 5.98892 6.04325 6.08390 6.15144 6.27916 6.29094 6.42155 6.51097 6.61151 6.66950 6.76656 6.92782 7.01516 7.07625 7.48274 7.71023 7.74711 8.34931 8.41087 9.04358 9.59595 10.27050 11.16740 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.003557 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.887813 B = 7870.936877 C = 8595.147339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.373 3.627 5 N -0.548 5.548 6 C 0.162 3.838 7 C -0.220 4.220 8 C -0.008 4.008 9 C -0.206 4.206 10 C 0.563 3.437 11 O -0.511 6.511 12 N -0.706 5.706 13 C 0.164 3.836 14 C -0.108 4.108 15 C -0.125 4.125 16 C -0.124 4.124 17 C 0.160 3.840 18 H 0.050 0.950 19 N -0.601 5.601 20 C -0.323 4.323 21 H 0.075 0.925 22 C -0.019 4.019 23 N -0.923 5.923 24 Si 1.064 2.936 25 H -0.295 1.295 26 H -0.289 1.289 27 H -0.300 1.300 28 C 0.105 3.895 29 C -0.128 4.128 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.397 0.603 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.262 0.738 46 H 0.029 0.971 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -21.263 -10.877 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.172 6.172 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.006 3.994 7 C -0.241 4.241 8 C -0.034 4.034 9 C -0.213 4.213 10 C 0.348 3.652 11 O -0.387 6.387 12 N -0.358 5.358 13 C 0.077 3.923 14 C -0.147 4.147 15 C -0.164 4.164 16 C -0.164 4.164 17 C 0.052 3.948 18 H 0.067 0.933 19 N -0.327 5.327 20 C -0.450 4.450 21 H 0.093 0.907 22 C -0.219 4.219 23 N -0.563 5.563 24 Si 0.897 3.103 25 H -0.222 1.222 26 H -0.216 1.216 27 H -0.228 1.228 28 C -0.020 4.020 29 C -0.167 4.167 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.358 -22.306 -9.234 24.180 hybrid contribution 1.012 0.987 -1.543 2.093 sum -0.346 -21.319 -10.777 23.891 Atomic orbital electron populations 1.21786 0.92792 1.02468 1.03830 1.22682 0.95240 0.81313 1.02160 1.86542 1.15462 1.29727 1.85467 1.19811 0.84705 0.88401 0.87788 1.67488 1.06629 1.32435 1.20687 1.22637 0.89184 0.97624 0.89996 1.21931 1.01788 0.92904 1.07460 1.21726 0.91321 1.00188 0.90208 1.20146 0.94309 0.92624 1.14171 1.17691 0.87862 0.82328 0.77281 1.90815 1.13871 1.85720 1.48281 1.45827 1.10017 1.04801 1.75125 1.21603 0.90551 0.84320 0.95778 1.22215 0.99439 0.97408 0.95678 1.22704 1.00285 0.95501 0.97868 1.23190 0.99902 0.97225 0.96112 1.21829 0.95688 0.89365 0.87882 0.93284 1.44848 1.65073 1.21149 1.01612 1.20005 1.40019 0.91027 0.93951 0.90695 1.25845 0.98636 1.01922 0.95538 1.70908 1.51311 0.97827 1.36293 0.83829 0.76325 0.74748 0.75388 1.22238 1.21560 1.22833 1.22090 0.93613 0.91753 0.94526 1.23098 0.97879 1.00621 0.95082 0.91498 0.90528 0.91408 0.91759 0.91704 0.81946 0.83838 0.83696 0.76803 0.91958 0.90982 0.92281 0.92082 0.90665 0.92100 0.92721 0.95372 0.92208 0.90382 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.66 6.03 37.16 0.22 0.88 16 3 O -0.27 -3.89 8.22 -39.74 -0.33 -4.22 16 4 C 0.37 5.15 7.51 -16.61 -0.12 5.02 16 5 N -0.55 -6.42 9.21 -12.98 -0.12 -6.54 16 6 C 0.16 1.41 11.17 -17.49 -0.20 1.22 16 7 C -0.22 -1.80 10.09 -39.50 -0.40 -2.20 16 8 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -2.79 5.90 -104.69 -0.62 -3.41 16 10 C 0.56 8.91 6.92 -12.48 -0.09 8.82 16 11 O -0.51 -9.45 13.07 -16.48 -0.22 -9.67 16 12 N -0.71 -10.76 5.19 -46.38 -0.24 -11.00 16 13 C 0.16 2.79 0.73 -129.37 -0.09 2.70 16 14 C -0.11 -1.69 5.25 -25.79 -0.14 -1.82 16 15 C -0.13 -1.81 6.88 -24.06 -0.17 -1.98 16 16 C -0.12 -2.20 6.38 -23.77 -0.15 -2.35 16 17 C 0.16 3.07 3.59 -65.61 -0.24 2.83 16 18 H 0.05 0.93 7.98 -51.93 -0.41 0.51 16 19 N -0.60 -14.14 2.89 -160.99 -0.47 -14.60 16 20 C -0.32 -8.90 10.16 -15.06 -0.15 -9.05 16 21 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 22 C -0.02 -0.55 5.42 -17.43 -0.09 -0.64 16 23 N -0.92 -28.58 13.70 55.49 0.76 -27.82 16 24 Si 1.06 26.74 24.69 -169.99 -4.20 22.55 16 25 H -0.29 -7.16 6.66 56.52 0.38 -6.79 16 26 H -0.29 -6.83 6.21 56.52 0.35 -6.48 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 28 C 0.11 2.33 4.70 -2.46 -0.01 2.32 16 29 C -0.13 -2.41 5.80 -24.61 -0.14 -2.55 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 8.11 -51.93 -0.42 0.21 16 34 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 1.20 6.52 -52.49 -0.34 0.86 16 38 H 0.40 5.26 6.59 -40.82 -0.27 4.99 16 39 H 0.06 0.97 7.40 -51.92 -0.38 0.58 16 40 H 0.07 1.14 7.41 -51.93 -0.38 0.76 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 46 H 0.03 0.65 5.54 -51.93 -0.29 0.36 16 47 H 0.06 1.42 6.32 -51.93 -0.33 1.10 16 48 H 0.08 1.44 7.65 -51.93 -0.40 1.04 16 49 H 0.07 1.41 6.82 -51.93 -0.35 1.06 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -33.98 381.66 -8.89 -42.86 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.46 Total: 4.32 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.38 Total: -1.64 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.07 Total: -59.96 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.54 Total: -13.88 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.20 Total: 22.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.98 -8.89 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992468632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.646 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds