Wall clock time and date at job start Wed Apr 1 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.46713 * 2 1 4 4 C 1.35425 * 116.99812 * 179.97438 * 3 2 1 5 5 N 1.32235 * 119.80072 * 359.97438 * 4 3 2 6 6 C 1.31882 * 121.80066 * 179.97438 * 5 4 3 7 7 C 1.38349 * 121.18917 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45553 * 359.70185 * 7 6 5 9 9 C 1.39992 * 118.35053 * 0.55593 * 8 7 6 10 10 C 1.47518 * 120.59974 * 179.71458 * 9 8 7 11 11 O 1.21586 * 120.00105 * 179.72706 * 10 9 8 12 12 N 1.34778 * 119.99901 * 359.72716 * 10 9 8 13 13 C 1.46505 * 119.99741 * 179.97438 * 12 10 9 14 14 C 1.53579 * 112.24427 * 300.35328 * 13 12 10 15 15 C 1.54225 * 106.67681 * 238.83027 * 14 13 12 16 16 C 1.56754 * 104.50469 * 335.25065 * 15 14 13 17 17 C 1.54770 * 102.29437 * 37.30667 * 16 15 14 18 18 H 1.09002 * 111.86508 * 85.86305 * 17 16 15 19 19 N 1.46975 * 108.68688 * 209.81144 * 17 16 15 20 20 C 1.36945 * 125.58019 * 295.04527 * 19 17 16 21 21 H 1.08001 * 119.99621 * 14.74854 * 20 19 17 22 22 C 1.38805 * 119.99903 * 194.75248 * 20 19 17 23 23 N 1.31625 * 119.99959 * 203.50817 * 22 20 19 24 24 Si 1.86796 * 120.00390 * 23.77863 * 22 20 19 25 25 H 1.48504 * 109.47420 * 269.72569 * 24 22 20 26 26 H 1.48497 * 109.47121 * 29.72343 * 24 22 20 27 27 H 1.48503 * 109.47559 * 149.72624 * 24 22 20 28 28 C 1.47369 * 108.84288 * 115.31295 * 19 17 16 29 29 C 1.54920 * 112.33237 * 64.35969 * 13 12 10 30 30 H 1.09001 * 109.47285 * 60.00076 * 1 2 3 31 31 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47116 * 299.99788 * 1 2 3 33 33 H 1.08999 * 109.47116 * 240.00212 * 2 1 3 34 34 H 1.09002 * 109.47079 * 120.00436 * 2 1 3 35 35 H 1.08002 * 119.40408 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.27448 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.82684 * 180.27644 * 8 7 6 38 38 H 0.96998 * 120.00153 * 359.97438 * 12 10 9 39 39 H 1.09009 * 110.01811 * 358.13001 * 14 13 12 40 40 H 1.08996 * 110.01946 * 119.47876 * 14 13 12 41 41 H 1.09001 * 110.49140 * 93.72097 * 15 14 13 42 42 H 1.08990 * 110.49206 * 216.25613 * 15 14 13 43 43 H 1.09002 * 111.09610 * 279.18714 * 16 15 14 44 44 H 1.08999 * 111.11538 * 155.43477 * 16 15 14 45 45 H 0.97003 * 119.99842 * 354.90902 * 23 22 20 46 46 H 1.09004 * 110.37062 * 93.91209 * 28 19 17 47 47 H 1.09000 * 110.37189 * 216.24220 * 28 19 17 48 48 H 1.08994 * 110.96578 * 204.32732 * 29 13 12 49 49 H 1.09001 * 110.96673 * 328.05785 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4634 0.6004 0.0016 7 6 6.0625 1.8475 0.0011 8 6 5.2713 2.9823 -0.0057 9 6 3.8805 2.8230 0.0001 10 6 2.9899 3.9990 -0.0004 11 8 1.7835 3.8481 -0.0004 12 7 3.5137 5.2409 -0.0009 13 6 2.6292 6.4088 -0.0020 14 6 1.7062 6.4380 -1.2291 15 6 1.9993 7.7572 -1.9722 16 6 2.5699 8.7117 -0.8674 17 6 3.4155 7.7463 -0.0024 18 1 4.4242 7.6252 -0.3973 19 7 3.4264 8.2409 1.3816 20 6 3.9877 9.4168 1.8030 21 1 4.2595 10.1741 1.0826 22 6 4.2072 9.6353 3.1561 23 7 4.2965 10.8645 3.6182 24 14 4.3836 8.1849 4.3199 25 1 3.0489 7.8154 4.8561 26 1 4.9598 7.0292 3.5868 27 1 5.2821 8.5571 5.4422 28 6 2.7402 7.2614 2.2426 29 6 1.7789 6.5045 1.2895 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 6.0819 -0.2850 0.0029 36 1 7.1390 1.9344 0.0016 37 1 5.7155 3.9667 -0.0107 38 1 4.4762 5.3613 -0.0005 39 1 1.9209 5.5887 -1.8778 40 1 0.6636 6.4110 -0.9124 41 1 2.7437 7.5984 -2.7524 42 1 1.0834 8.1672 -2.3975 43 1 1.7667 9.1535 -0.2776 44 1 3.1986 9.4872 -1.3049 45 1 4.2830 11.6156 3.0045 46 1 3.4612 6.5728 2.6832 47 1 2.1759 7.7718 3.0231 48 1 0.8675 7.0761 1.1148 49 1 1.5469 5.5129 1.6780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992468632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:44 Heat of formation + Delta-G solvation = -28.741251 kcal Electronic energy + Delta-G solvation = -31642.818584 eV Core-core repulsion = 27570.036969 eV Total energy + Delta-G solvation = -4072.781616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.10452 -41.29836 -39.37738 -38.99914 -36.16084 -34.94288 -33.98582 -33.47416 -32.98439 -31.62880 -30.87304 -28.73925 -27.76877 -25.74022 -25.18435 -24.86256 -23.28404 -23.02502 -22.01565 -21.13401 -20.33694 -19.58359 -19.45359 -18.64053 -17.91152 -17.36713 -17.27212 -16.79705 -16.32436 -15.99039 -15.88315 -15.69161 -15.53836 -14.98640 -14.92403 -14.88167 -14.69484 -14.44009 -14.10136 -13.60110 -13.54515 -13.42625 -13.32814 -13.29570 -13.12266 -12.86567 -12.62562 -12.46103 -12.37188 -12.00103 -11.86663 -11.73834 -11.69193 -11.54222 -11.45497 -11.18802 -11.09153 -11.03144 -10.62879 -10.56413 -10.04574 -9.53755 -9.12502 -8.56400 -5.41531 -0.34629 0.22821 1.40506 1.48710 1.65993 1.88365 1.98146 2.06311 2.52238 2.80289 3.03636 3.21322 3.26057 3.40011 3.71995 3.72955 3.77527 3.85879 3.96534 4.06124 4.13398 4.19349 4.20453 4.22577 4.34226 4.40644 4.41884 4.50105 4.54038 4.67075 4.75734 4.77991 4.81225 4.84898 4.88158 4.92069 5.00782 5.02691 5.08420 5.14454 5.19195 5.21279 5.26619 5.42199 5.47666 5.60657 5.69160 6.14543 6.24052 6.51883 6.74319 6.84871 7.24176 7.50995 8.16425 8.90694 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.003557 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.887813 B = 7870.936877 C = 8595.147339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.297 6.297 4 C 0.352 3.648 5 N -0.560 5.560 6 C 0.165 3.835 7 C -0.207 4.207 8 C -0.009 4.009 9 C -0.235 4.235 10 C 0.563 3.437 11 O -0.545 6.545 12 N -0.702 5.702 13 C 0.174 3.826 14 C -0.102 4.102 15 C -0.109 4.109 16 C -0.123 4.123 17 C 0.154 3.846 18 H 0.060 0.940 19 N -0.615 5.615 20 C -0.300 4.300 21 H 0.051 0.949 22 C -0.075 4.075 23 N -0.961 5.961 24 Si 1.100 2.900 25 H -0.286 1.286 26 H -0.264 1.264 27 H -0.306 1.306 28 C 0.103 3.897 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.203 0.797 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.407 0.593 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.249 0.751 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.079 0.921 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -24.308 -12.368 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.203 6.203 4 C 0.173 3.827 5 N -0.284 5.284 6 C 0.008 3.992 7 C -0.226 4.226 8 C -0.035 4.035 9 C -0.241 4.241 10 C 0.351 3.649 11 O -0.423 6.423 12 N -0.354 5.354 13 C 0.087 3.913 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.163 4.163 17 C 0.048 3.952 18 H 0.078 0.922 19 N -0.341 5.341 20 C -0.429 4.429 21 H 0.069 0.931 22 C -0.269 4.269 23 N -0.605 5.605 24 Si 0.928 3.072 25 H -0.214 1.214 26 H -0.190 1.190 27 H -0.235 1.235 28 C -0.021 4.021 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.199 0.801 37 H 0.180 0.820 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.097 0.903 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.022 -25.387 -10.774 27.579 hybrid contribution 0.649 1.872 -1.169 2.300 sum 0.672 -23.515 -11.943 26.382 Atomic orbital electron populations 1.21804 0.91809 1.03991 1.02787 1.22844 0.96027 0.80268 1.02470 1.86503 1.16438 1.31513 1.85799 1.20015 0.84778 0.89085 0.88824 1.67559 1.07924 1.31778 1.21179 1.23428 0.88440 0.99550 0.87747 1.22367 1.03458 0.91778 1.05043 1.22023 0.90081 1.01955 0.89406 1.20061 0.95379 0.91493 1.17154 1.18048 0.87818 0.82816 0.76192 1.90789 1.15429 1.86204 1.49881 1.45724 1.10335 1.04205 1.75168 1.21410 0.90329 0.84062 0.95511 1.22151 0.98751 0.98168 0.94984 1.22630 1.01536 0.93607 0.96929 1.23079 0.98962 0.97510 0.96781 1.22059 0.96780 0.90830 0.85557 0.92243 1.44857 1.64918 1.20538 1.03809 1.19881 1.37799 0.91858 0.93339 0.93125 1.26878 0.99355 1.02979 0.97669 1.71011 1.54878 0.98377 1.36232 0.83364 0.76650 0.73133 0.74025 1.21358 1.18978 1.23477 1.22100 0.93948 0.91434 0.94650 1.23009 0.97511 0.99959 0.95347 0.92291 0.87698 0.92593 0.91171 0.91502 0.78056 0.80065 0.81984 0.75590 0.91499 0.91396 0.90191 0.90282 0.93058 0.92301 0.94122 0.95196 0.94316 0.90266 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.06 1.23 6.03 71.98 0.43 1.67 16 3 O -0.30 -8.65 8.22 -66.38 -0.55 -9.19 16 4 C 0.35 9.38 7.51 85.13 0.64 10.02 16 5 N -0.56 -11.91 9.21 -308.00 -2.84 -14.75 16 6 C 0.16 2.23 11.17 84.71 0.95 3.17 16 7 C -0.21 -2.47 10.09 22.32 0.23 -2.25 16 8 C -0.01 -0.15 9.64 22.72 0.22 0.06 16 9 C -0.23 -6.00 5.90 -19.91 -0.12 -6.12 16 10 C 0.56 17.26 6.92 86.69 0.60 17.86 16 11 O -0.54 -20.04 13.07 16.83 0.22 -19.82 16 12 N -0.70 -20.14 5.19 -418.91 -2.17 -22.31 16 13 C 0.17 5.68 0.73 5.19 0.00 5.68 16 14 C -0.10 -2.96 5.25 31.20 0.16 -2.80 16 15 C -0.11 -2.86 6.88 32.32 0.22 -2.64 16 16 C -0.12 -4.25 6.38 32.51 0.21 -4.04 16 17 C 0.15 5.72 3.59 46.24 0.17 5.89 16 18 H 0.06 2.12 7.98 -2.39 -0.02 2.10 16 19 N -0.62 -28.80 2.89 -663.26 -1.92 -30.72 16 20 C -0.30 -16.81 10.16 84.03 0.85 -15.96 16 21 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 22 C -0.07 -4.41 5.42 84.86 0.46 -3.95 16 23 N -0.96 -61.39 13.70 21.65 0.30 -61.09 16 24 Si 1.10 54.34 24.69 68.60 1.69 56.04 16 25 H -0.29 -13.64 6.66 99.48 0.66 -12.98 16 26 H -0.26 -11.84 6.21 99.48 0.62 -11.22 16 27 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 28 C 0.10 4.53 4.70 86.93 0.41 4.94 16 29 C -0.12 -4.43 5.80 31.97 0.19 -4.24 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 37 H 0.16 2.12 6.52 -2.91 -0.02 2.10 16 38 H 0.41 9.81 6.59 -92.71 -0.61 9.20 16 39 H 0.07 1.93 7.40 -2.38 -0.02 1.91 16 40 H 0.07 2.05 7.41 -2.39 -0.02 2.04 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 46 H 0.03 1.33 5.54 -2.39 -0.01 1.31 16 47 H 0.04 1.85 6.32 -2.39 -0.02 1.84 16 48 H 0.08 2.90 7.65 -2.39 -0.02 2.88 16 49 H 0.07 2.80 6.82 -2.39 -0.02 2.78 16 Total: -1.00 -76.80 381.66 1.28 -75.52 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.18 Total: 20.83 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.36 Total: 5.48 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -6.63 Total: -128.87 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.33 Total: -29.01 kcal Atomic # 14 Polarization: 54.34 SS G_CDS: 1.69 Total: 56.04 kcal Total: -76.80 1.28 -75.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992468632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.781 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds