Wall clock time and date at job start Wed Apr 1 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47626 * 2 1 4 4 C 1.35681 * 117.00317 * 179.97438 * 3 2 1 5 5 C 1.38888 * 119.62222 * 179.97438 * 4 3 2 6 6 C 1.39575 * 118.94622 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.89611 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99805 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00528 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00112 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.55014 * 350.69840 * 10 9 7 12 12 C 1.53025 * 117.50080 * 136.38644 * 10 9 7 13 13 C 1.52809 * 117.49945 * 204.96900 * 10 9 7 14 14 C 1.53184 * 117.71416 * 144.89581 * 13 10 9 15 15 C 1.53348 * 108.77218 * 158.88840 * 14 13 10 16 16 N 1.46839 * 108.81622 * 51.30770 * 15 14 13 17 17 C 1.36938 * 120.37979 * 123.11888 * 16 15 14 18 18 H 1.08000 * 120.00452 * 330.67185 * 17 16 15 19 19 C 1.38812 * 119.99695 * 150.67183 * 17 16 15 20 20 N 1.31622 * 120.00272 * 342.83626 * 19 17 16 21 21 Si 1.86803 * 120.00041 * 162.83782 * 19 17 16 22 22 H 1.48504 * 109.47140 * 90.00012 * 21 19 17 23 23 H 1.48500 * 109.47047 * 209.99526 * 21 19 17 24 24 H 1.48494 * 109.47104 * 329.99802 * 21 19 17 25 25 C 1.46839 * 119.23676 * 303.10375 * 16 15 14 26 26 C 1.53179 * 117.71761 * 0.13940 * 13 10 9 27 27 C 1.39963 * 118.21821 * 0.02562 * 6 5 4 28 28 C 1.37979 * 119.13510 * 359.97438 * 27 6 5 29 29 N 1.31917 * 120.97134 * 359.74604 * 28 27 6 30 30 H 1.08998 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46834 * 60.00097 * 1 2 3 32 32 H 1.09003 * 109.47204 * 300.00596 * 1 2 3 33 33 H 1.09007 * 109.46834 * 119.99903 * 2 1 3 34 34 H 1.09003 * 109.47204 * 239.99404 * 2 1 3 35 35 H 1.07995 * 120.52865 * 359.96017 * 5 4 3 36 36 H 0.96999 * 120.00077 * 359.97438 * 9 7 6 37 37 H 1.09007 * 117.50356 * 214.94973 * 12 10 9 38 38 H 1.09001 * 117.50695 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.59145 * 278.67931 * 14 13 10 40 40 H 1.09010 * 109.58567 * 39.10921 * 14 13 10 41 41 H 1.09000 * 109.58075 * 291.50910 * 15 14 13 42 42 H 1.09003 * 109.58151 * 171.11216 * 15 14 13 43 43 H 0.97001 * 120.00542 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.57793 * 297.10186 * 25 16 15 45 45 H 1.09003 * 109.69649 * 176.76650 * 25 16 15 46 46 H 1.09008 * 109.58687 * 320.90180 * 26 13 10 47 47 H 1.08998 * 109.59173 * 81.32726 * 26 13 10 48 48 H 1.08004 * 120.43576 * 180.02562 * 27 6 5 49 49 H 1.07995 * 119.51726 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8740 2.8118 0.0000 6 6 5.2597 2.9783 0.0011 7 6 5.8634 4.3314 0.0001 8 8 5.1499 5.3150 -0.0022 9 7 7.2039 4.4713 0.0007 10 6 7.8007 5.8093 0.0002 11 1 7.1061 6.6339 -0.1596 12 6 8.9856 6.0548 0.9369 13 6 9.2106 5.9527 -0.5714 14 6 9.5443 7.2414 -1.3294 15 6 11.0669 7.4231 -1.3474 16 7 11.6864 6.1822 -1.8296 17 6 12.5118 6.1994 -2.9222 18 1 12.3665 6.9373 -3.6973 19 6 13.5353 5.2683 -3.0334 20 7 13.9344 4.5991 -1.9726 21 14 14.3463 4.9651 -4.6887 22 1 15.5011 5.8848 -4.8500 23 1 14.8198 3.5593 -4.7578 24 1 13.3629 5.2102 -5.7740 25 6 11.4108 4.9228 -1.1267 26 6 9.8952 4.6903 -1.1044 27 6 6.0639 1.8328 0.0022 28 6 5.4635 0.5905 0.0026 29 7 4.1497 0.4715 0.0071 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 3.2184 3.6700 -0.0014 36 1 7.7735 3.6862 0.0022 37 1 9.0708 7.0412 1.3930 38 1 9.3208 5.2210 1.5538 39 1 9.1726 7.1707 -2.3517 40 1 9.0808 8.0909 -0.8277 41 1 11.4208 7.6403 -0.3395 42 1 11.3288 8.2452 -2.0136 43 1 14.6499 3.9488 -2.0502 44 1 11.7860 4.9851 -0.1051 45 1 11.8994 4.0980 -1.6456 46 1 9.6644 3.8469 -0.4535 47 1 9.5426 4.4821 -2.1145 48 1 7.1404 1.9200 0.0035 49 1 6.0781 -0.2975 0.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016816777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:05 Heat of formation + Delta-G solvation = 10.090933 kcal Electronic energy + Delta-G solvation = -29554.908825 eV Core-core repulsion = 25483.811099 eV Total energy + Delta-G solvation = -4071.097726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.16368 -39.96145 -38.66062 -37.97867 -35.55866 -33.63163 -32.71902 -32.38506 -31.43180 -30.20318 -30.15867 -28.29474 -25.58731 -24.37764 -23.70723 -23.43381 -22.51713 -21.93288 -21.01006 -20.50583 -19.05594 -18.22938 -17.60103 -16.89204 -16.66055 -16.38820 -16.09880 -15.75665 -15.11416 -14.88646 -14.76632 -14.29587 -14.20553 -14.14833 -14.09097 -13.62831 -13.41776 -13.07544 -13.00251 -12.74025 -12.66364 -12.42636 -12.25951 -11.91377 -11.77621 -11.56428 -11.43216 -11.15159 -11.02424 -10.73850 -10.57538 -10.46565 -10.33627 -10.26405 -10.02208 -9.92465 -9.76190 -9.63154 -9.42174 -8.90083 -8.56665 -8.48387 -6.66309 -5.82265 -3.25566 0.37448 0.78141 2.49329 2.63714 2.98187 3.34768 3.42222 3.44893 3.49460 3.90691 4.12692 4.25818 4.47211 4.56838 4.62171 4.62284 4.67802 4.74001 4.91723 4.98897 5.07419 5.08417 5.25825 5.33869 5.36349 5.42693 5.43650 5.46057 5.59332 5.63898 5.68551 5.79719 5.93858 6.00135 6.02771 6.06727 6.23845 6.39416 6.47572 6.52139 6.59419 6.65916 6.79389 6.87131 6.96722 7.28454 7.33574 7.42282 7.60763 7.77064 7.98683 8.43646 9.18983 9.82326 10.39004 11.25601 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002092 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.484075 B =13381.626504 C =14423.885698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.321 3.679 5 C -0.133 4.133 6 C -0.049 4.049 7 C 0.560 3.440 8 O -0.529 6.529 9 N -0.683 5.683 10 C 0.066 3.934 11 H 0.134 0.866 12 C -0.180 4.180 13 C -0.095 4.095 14 C -0.098 4.098 15 C 0.149 3.851 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.106 4.106 27 C -0.181 4.181 28 C 0.140 3.860 29 N -0.528 5.528 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.143 0.857 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.656 -8.796 6.692 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.212 6.212 4 C 0.142 3.858 5 C -0.154 4.154 6 C -0.060 4.060 7 C 0.346 3.654 8 O -0.406 6.406 9 N -0.333 5.333 10 C -0.039 4.039 11 H 0.151 0.849 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.138 4.138 15 C 0.022 3.978 16 N -0.311 5.311 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.145 4.145 27 C -0.202 4.202 28 C -0.015 4.015 29 N -0.253 5.253 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.240 0.760 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.161 0.839 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.627 -8.836 6.698 24.304 hybrid contribution 1.252 -0.120 -0.712 1.445 sum -20.375 -8.957 5.986 23.048 Atomic orbital electron populations 1.21831 0.92896 1.02958 1.03454 1.22639 0.94845 0.80823 1.02612 1.86255 1.16430 1.30898 1.87618 1.19622 0.84283 0.89424 0.92516 1.21118 0.94545 0.96467 1.03312 1.20131 0.93327 0.93801 0.98709 1.18013 0.82404 0.88001 0.76949 1.90777 1.61084 1.39394 1.49329 1.45281 1.05850 1.09051 1.73094 1.21948 0.90391 0.85306 1.06259 0.84853 1.23546 1.01276 1.03181 0.93880 1.21972 0.94363 0.98960 0.94304 1.21705 0.99730 0.93182 0.99178 1.20862 0.89611 0.90196 0.97087 1.43952 1.53113 1.01147 1.32903 1.19184 1.06825 1.15917 0.96314 0.91804 1.25053 0.96396 1.01137 0.96993 1.70022 1.29282 1.28453 1.26904 0.86332 0.79331 0.77280 0.84052 1.21375 1.21570 1.20486 1.20741 0.88213 0.90634 0.95652 1.21837 1.00680 0.92636 0.99371 1.22212 1.01435 0.92719 1.03834 1.22400 0.88898 0.97311 0.92908 1.67221 1.06880 1.33298 1.17858 0.90215 0.91553 0.91574 0.91504 0.91487 0.82769 0.76007 0.88265 0.88802 0.91756 0.92776 0.96218 0.92610 0.93647 0.96370 0.89175 0.93877 0.91942 0.83882 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.07 0.52 6.03 37.16 0.22 0.74 16 3 O -0.30 -3.24 10.11 -18.74 -0.19 -3.43 16 4 C 0.32 3.62 7.49 -17.17 -0.13 3.49 16 5 C -0.13 -1.55 9.61 -38.84 -0.37 -1.93 16 6 C -0.05 -0.56 5.91 -104.68 -0.62 -1.18 16 7 C 0.56 7.61 7.80 -12.19 -0.10 7.52 16 8 O -0.53 -8.85 16.01 5.35 0.09 -8.76 16 9 N -0.68 -8.57 5.30 -54.73 -0.29 -8.86 16 10 C 0.07 0.93 6.14 -68.01 -0.42 0.51 16 11 H 0.13 1.98 7.40 -51.93 -0.38 1.59 16 12 C -0.18 -2.48 9.86 -26.80 -0.26 -2.74 16 13 C -0.09 -1.49 1.94 -154.50 -0.30 -1.79 16 14 C -0.10 -1.65 5.83 -26.46 -0.15 -1.80 16 15 C 0.15 3.01 6.51 -3.68 -0.02 2.99 16 16 N -0.59 -14.18 2.93 -172.26 -0.51 -14.68 16 17 C -0.25 -6.75 9.54 -15.06 -0.14 -6.90 16 18 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 20 N -0.90 -25.41 11.21 55.49 0.62 -24.79 16 21 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.17 3.89 5.39 -3.67 -0.02 3.87 16 26 C -0.11 -1.84 5.37 -26.46 -0.14 -1.98 16 27 C -0.18 -1.63 9.61 -39.03 -0.38 -2.01 16 28 C 0.14 1.21 11.17 -17.61 -0.20 1.01 16 29 N -0.53 -5.55 9.18 -13.38 -0.12 -5.67 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.15 1.81 7.74 -52.49 -0.41 1.40 16 36 H 0.40 4.28 5.26 -40.82 -0.21 4.07 16 37 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.78 8.10 -51.92 -0.42 0.36 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 46 H 0.04 0.62 6.75 -51.92 -0.35 0.27 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.14 0.98 6.53 -52.48 -0.34 0.63 16 49 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -31.61 398.43 -9.61 -41.23 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.46 Total: 3.46 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.73 Total: -0.68 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.30 Total: -54.00 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.10 Total: -12.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.61 -9.61 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016816777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.318 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds