Wall clock time and date at job start Wed Apr 1 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47626 * 2 1 4 4 C 1.35681 * 117.00317 * 179.97438 * 3 2 1 5 5 C 1.38888 * 119.62222 * 179.97438 * 4 3 2 6 6 C 1.39575 * 118.94622 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.89611 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99805 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00528 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00112 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.55014 * 350.69840 * 10 9 7 12 12 C 1.53025 * 117.50080 * 136.38644 * 10 9 7 13 13 C 1.52809 * 117.49945 * 204.96900 * 10 9 7 14 14 C 1.53184 * 117.71416 * 144.89581 * 13 10 9 15 15 C 1.53348 * 108.77218 * 158.88840 * 14 13 10 16 16 N 1.46839 * 108.81622 * 51.30770 * 15 14 13 17 17 C 1.36938 * 120.37979 * 123.11888 * 16 15 14 18 18 H 1.08000 * 120.00452 * 330.67185 * 17 16 15 19 19 C 1.38812 * 119.99695 * 150.67183 * 17 16 15 20 20 N 1.31622 * 120.00272 * 342.83626 * 19 17 16 21 21 Si 1.86803 * 120.00041 * 162.83782 * 19 17 16 22 22 H 1.48504 * 109.47140 * 90.00012 * 21 19 17 23 23 H 1.48500 * 109.47047 * 209.99526 * 21 19 17 24 24 H 1.48494 * 109.47104 * 329.99802 * 21 19 17 25 25 C 1.46839 * 119.23676 * 303.10375 * 16 15 14 26 26 C 1.53179 * 117.71761 * 0.13940 * 13 10 9 27 27 C 1.39963 * 118.21821 * 0.02562 * 6 5 4 28 28 C 1.37979 * 119.13510 * 359.97438 * 27 6 5 29 29 N 1.31917 * 120.97134 * 359.74604 * 28 27 6 30 30 H 1.08998 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46834 * 60.00097 * 1 2 3 32 32 H 1.09003 * 109.47204 * 300.00596 * 1 2 3 33 33 H 1.09007 * 109.46834 * 119.99903 * 2 1 3 34 34 H 1.09003 * 109.47204 * 239.99404 * 2 1 3 35 35 H 1.07995 * 120.52865 * 359.96017 * 5 4 3 36 36 H 0.96999 * 120.00077 * 359.97438 * 9 7 6 37 37 H 1.09007 * 117.50356 * 214.94973 * 12 10 9 38 38 H 1.09001 * 117.50695 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.59145 * 278.67931 * 14 13 10 40 40 H 1.09010 * 109.58567 * 39.10921 * 14 13 10 41 41 H 1.09000 * 109.58075 * 291.50910 * 15 14 13 42 42 H 1.09003 * 109.58151 * 171.11216 * 15 14 13 43 43 H 0.97001 * 120.00542 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.57793 * 297.10186 * 25 16 15 45 45 H 1.09003 * 109.69649 * 176.76650 * 25 16 15 46 46 H 1.09008 * 109.58687 * 320.90180 * 26 13 10 47 47 H 1.08998 * 109.59173 * 81.32726 * 26 13 10 48 48 H 1.08004 * 120.43576 * 180.02562 * 27 6 5 49 49 H 1.07995 * 119.51726 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8740 2.8118 0.0000 6 6 5.2597 2.9783 0.0011 7 6 5.8634 4.3314 0.0001 8 8 5.1499 5.3150 -0.0022 9 7 7.2039 4.4713 0.0007 10 6 7.8007 5.8093 0.0002 11 1 7.1061 6.6339 -0.1596 12 6 8.9856 6.0548 0.9369 13 6 9.2106 5.9527 -0.5714 14 6 9.5443 7.2414 -1.3294 15 6 11.0669 7.4231 -1.3474 16 7 11.6864 6.1822 -1.8296 17 6 12.5118 6.1994 -2.9222 18 1 12.3665 6.9373 -3.6973 19 6 13.5353 5.2683 -3.0334 20 7 13.9344 4.5991 -1.9726 21 14 14.3463 4.9651 -4.6887 22 1 15.5011 5.8848 -4.8500 23 1 14.8198 3.5593 -4.7578 24 1 13.3629 5.2102 -5.7740 25 6 11.4108 4.9228 -1.1267 26 6 9.8952 4.6903 -1.1044 27 6 6.0639 1.8328 0.0022 28 6 5.4635 0.5905 0.0026 29 7 4.1497 0.4715 0.0071 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 3.2184 3.6700 -0.0014 36 1 7.7735 3.6862 0.0022 37 1 9.0708 7.0412 1.3930 38 1 9.3208 5.2210 1.5538 39 1 9.1726 7.1707 -2.3517 40 1 9.0808 8.0909 -0.8277 41 1 11.4208 7.6403 -0.3395 42 1 11.3288 8.2452 -2.0136 43 1 14.6499 3.9488 -2.0502 44 1 11.7860 4.9851 -0.1051 45 1 11.8994 4.0980 -1.6456 46 1 9.6644 3.8469 -0.4535 47 1 9.5426 4.4821 -2.1145 48 1 7.1404 1.9200 0.0035 49 1 6.0781 -0.2975 0.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016816777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:03 Heat of formation + Delta-G solvation = -9.994033 kcal Electronic energy + Delta-G solvation = -29555.779775 eV Core-core repulsion = 25483.811099 eV Total energy + Delta-G solvation = -4071.968675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.00193 -41.01923 -39.82430 -38.85566 -37.14473 -34.83587 -33.81840 -33.21503 -32.81118 -31.72910 -30.92349 -29.89763 -26.49738 -26.16583 -24.46855 -24.19454 -23.98374 -23.08741 -22.36378 -21.62724 -20.01984 -19.70910 -18.42872 -18.36766 -17.53855 -17.36033 -17.07087 -16.83743 -16.64407 -16.13656 -15.74009 -15.65395 -15.34111 -15.14213 -14.95326 -14.88516 -14.82935 -14.62782 -14.15759 -13.78555 -13.46488 -13.37768 -13.30844 -13.05238 -13.04075 -12.90676 -12.60146 -12.53961 -12.49385 -12.31621 -11.99084 -11.76451 -11.75186 -11.53266 -11.38588 -11.23069 -11.12582 -10.81446 -10.67432 -10.47262 -9.74760 -9.64466 -8.58772 -7.84693 -5.30630 -0.48052 0.03072 1.46973 1.49125 1.58263 1.64076 1.66962 2.10063 2.52936 2.67343 2.95999 3.20482 3.30188 3.37357 3.65177 3.79402 3.82714 3.85671 3.90697 3.98862 3.99696 4.08414 4.14167 4.16580 4.44910 4.54776 4.56166 4.59276 4.70072 4.73034 4.81578 4.87287 4.88306 4.92179 4.94450 4.95777 5.02747 5.10082 5.17687 5.23686 5.27544 5.31664 5.38884 5.43103 5.56236 5.68045 5.82176 6.14970 6.32765 6.43783 6.66967 6.96839 7.19408 7.91402 8.41820 9.20124 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002092 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.484075 B =13381.626504 C =14423.885698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.319 6.319 4 C 0.310 3.690 5 C -0.149 4.149 6 C -0.060 4.060 7 C 0.562 3.438 8 O -0.566 6.566 9 N -0.675 5.675 10 C 0.081 3.919 11 H 0.128 0.872 12 C -0.166 4.166 13 C -0.113 4.113 14 C -0.088 4.088 15 C 0.146 3.854 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.179 3.821 26 C -0.091 4.091 27 C -0.171 4.171 28 C 0.144 3.856 29 N -0.534 5.534 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.019 0.981 42 H 0.050 0.950 43 H 0.250 0.750 44 H 0.001 0.999 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.170 0.830 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.461 -10.007 7.100 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.227 6.227 4 C 0.132 3.868 5 C -0.171 4.171 6 C -0.070 4.070 7 C 0.350 3.650 8 O -0.445 6.445 9 N -0.325 5.325 10 C -0.024 4.024 11 H 0.146 0.854 12 C -0.205 4.205 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.020 3.980 16 N -0.331 5.331 17 C -0.394 4.394 18 H 0.078 0.922 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.199 1.199 25 C 0.053 3.947 26 C -0.130 4.130 27 C -0.191 4.191 28 C -0.011 4.011 29 N -0.259 5.259 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.019 0.981 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.187 0.813 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.452 -10.050 7.110 25.605 hybrid contribution 1.509 0.256 -0.811 1.732 sum -20.943 -9.794 6.300 23.962 Atomic orbital electron populations 1.21852 0.91237 1.04323 1.03262 1.22846 0.96161 0.79696 1.02626 1.86245 1.16328 1.32541 1.87581 1.19679 0.84721 0.89445 0.92947 1.21091 0.94851 0.96541 1.04580 1.20013 0.93414 0.93460 1.00137 1.18295 0.82349 0.88413 0.75965 1.90759 1.61897 1.40791 1.51089 1.45188 1.05722 1.08991 1.72563 1.21765 0.89451 0.85904 1.05315 0.85385 1.23644 0.99951 1.04371 0.92486 1.21825 0.96097 0.97599 0.95970 1.21537 0.96848 0.95038 0.99303 1.20979 0.91818 0.88639 0.96558 1.44221 1.53218 1.02954 1.32721 1.19465 1.07038 1.15670 0.97192 0.92178 1.25724 0.97265 1.01369 0.99852 1.70157 1.29877 1.29103 1.28517 0.85376 0.78311 0.76771 0.80565 1.21334 1.21674 1.19898 1.20564 0.91345 0.89021 0.93731 1.21575 0.96800 0.94818 0.99793 1.22497 1.02494 0.91906 1.02253 1.23056 0.88495 0.98472 0.91109 1.67309 1.07770 1.32946 1.17854 0.88038 0.91799 0.91684 0.91353 0.91513 0.83888 0.74721 0.87060 0.87734 0.92810 0.90033 0.96341 0.93110 0.94068 0.98107 0.92525 0.90664 0.93051 0.81299 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.06 0.91 6.03 71.98 0.43 1.35 16 3 O -0.32 -6.76 10.11 -89.99 -0.91 -7.67 16 4 C 0.31 6.85 7.49 84.80 0.63 7.48 16 5 C -0.15 -3.47 9.61 22.75 0.22 -3.25 16 6 C -0.06 -1.29 5.91 -19.90 -0.12 -1.40 16 7 C 0.56 14.54 7.80 86.88 0.68 15.21 16 8 O -0.57 -18.73 16.01 -3.77 -0.06 -18.79 16 9 N -0.67 -15.27 5.30 -445.36 -2.36 -17.63 16 10 C 0.08 2.08 6.14 44.94 0.28 2.36 16 11 H 0.13 3.53 7.40 -2.39 -0.02 3.51 16 12 C -0.17 -4.08 9.86 30.55 0.30 -3.78 16 13 C -0.11 -3.34 1.94 -52.18 -0.10 -3.44 16 14 C -0.09 -2.82 5.83 30.77 0.18 -2.64 16 15 C 0.15 5.83 6.51 86.43 0.56 6.40 16 16 N -0.61 -29.50 2.93 -698.91 -2.05 -31.55 16 17 C -0.26 -14.24 9.54 84.03 0.80 -13.44 16 18 H 0.06 3.22 7.89 -2.91 -0.02 3.19 16 19 C -0.05 -2.54 4.90 84.86 0.42 -2.12 16 20 N -0.93 -53.37 11.21 21.65 0.24 -53.13 16 21 Si 0.96 44.06 29.59 68.60 2.03 46.09 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 C 0.18 8.06 5.39 86.43 0.47 8.52 16 26 C -0.09 -3.01 5.37 30.77 0.17 -2.85 16 27 C -0.17 -2.59 9.61 22.63 0.22 -2.38 16 28 C 0.14 2.05 11.17 84.62 0.94 2.99 16 29 N -0.53 -10.27 9.18 -309.15 -2.84 -13.11 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 34 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 35 H 0.14 3.54 7.74 -2.91 -0.02 3.51 16 36 H 0.41 7.41 5.26 -92.71 -0.49 6.93 16 37 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.16 8.10 -2.38 -0.02 2.14 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.06 2.92 5.95 -2.39 -0.01 2.91 16 46 H 0.07 1.97 6.75 -2.38 -0.02 1.96 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.17 1.61 6.53 -2.91 -0.02 1.59 16 49 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -70.07 398.43 1.34 -68.72 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.48 Total: 18.82 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.82 Total: 8.25 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -7.01 Total: -115.43 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.97 Total: -26.46 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.07 1.34 -68.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016816777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.730 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds