Wall clock time and date at job start Wed Apr 1 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46780 * 2 1 4 4 C 1.35690 * 116.99654 * 179.97438 * 3 2 1 5 5 C 1.38884 * 119.62246 * 179.72888 * 4 3 2 6 6 C 1.39575 * 118.94863 * 179.74002 * 5 4 3 7 7 C 1.48159 * 120.89618 * 180.25968 * 6 5 4 8 8 O 1.21517 * 119.99853 * 0.27105 * 7 6 5 9 9 N 1.34773 * 120.00464 * 180.26772 * 7 6 5 10 10 C 1.46502 * 120.00408 * 179.97438 * 9 7 6 11 11 H 1.09001 * 115.55126 * 9.29404 * 10 9 7 12 12 C 1.53031 * 117.50090 * 223.61110 * 10 9 7 13 13 C 1.52811 * 117.50144 * 155.02562 * 10 9 7 14 14 C 1.53186 * 117.71684 * 359.86319 * 13 10 9 15 15 C 1.53353 * 108.77152 * 158.88826 * 14 13 10 16 16 N 1.46841 * 108.81655 * 51.30422 * 15 14 13 17 17 C 1.36939 * 120.38315 * 123.11785 * 16 15 14 18 18 H 1.08002 * 120.00176 * 331.80096 * 17 16 15 19 19 C 1.38810 * 119.99964 * 151.79899 * 17 16 15 20 20 N 1.31618 * 120.00039 * 159.30385 * 19 17 16 21 21 Si 1.86804 * 119.99872 * 339.30356 * 19 17 16 22 22 H 1.48505 * 109.47189 * 94.25036 * 21 19 17 23 23 H 1.48498 * 109.46929 * 214.24299 * 21 19 17 24 24 H 1.48494 * 109.47181 * 334.24619 * 21 19 17 25 25 C 1.46844 * 119.23629 * 303.10177 * 16 15 14 26 26 C 1.53184 * 117.71579 * 215.09748 * 13 10 9 27 27 C 1.39969 * 118.21346 * 0.52107 * 6 5 4 28 28 C 1.37975 * 119.13185 * 359.73488 * 27 6 5 29 29 N 1.31901 * 120.98119 * 0.02562 * 28 27 6 30 30 H 1.09000 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47063 * 299.99946 * 1 2 3 32 32 H 1.08998 * 109.46982 * 59.99978 * 1 2 3 33 33 H 1.09008 * 109.47218 * 119.99548 * 2 1 3 34 34 H 1.08995 * 109.47184 * 239.99645 * 2 1 3 35 35 H 1.08002 * 120.53029 * 359.97438 * 5 4 3 36 36 H 0.97000 * 119.99822 * 359.97438 * 9 7 6 37 37 H 1.08993 * 117.50515 * 359.97438 * 12 10 9 38 38 H 1.09005 * 117.49960 * 145.01398 * 12 10 9 39 39 H 1.09006 * 109.58228 * 278.67024 * 14 13 10 40 40 H 1.08992 * 109.58855 * 39.10054 * 14 13 10 41 41 H 1.09000 * 109.57673 * 291.50289 * 15 14 13 42 42 H 1.09002 * 109.57657 * 171.10154 * 15 14 13 43 43 H 0.96998 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.57854 * 297.11086 * 25 16 15 45 45 H 1.09000 * 109.58504 * 176.70074 * 25 16 15 46 46 H 1.09007 * 109.58334 * 320.90588 * 26 13 10 47 47 H 1.09005 * 109.58467 * 81.32980 * 26 13 10 48 48 H 1.08001 * 120.43181 * 179.71760 * 27 6 5 49 49 H 1.08005 * 119.50947 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3515 1.5252 0.0005 5 6 3.8739 2.8120 -0.0051 6 6 5.2596 2.9786 0.0010 7 6 5.8632 4.3317 0.0011 8 8 5.1496 5.3153 0.0007 9 7 7.2036 4.4717 0.0017 10 6 7.8004 5.8097 0.0012 11 1 7.1055 6.6345 0.1592 12 6 8.9863 6.0541 -0.9347 13 6 9.2097 5.9539 0.5741 14 6 9.8938 4.6921 1.1093 15 6 11.4094 4.9248 1.1330 16 7 11.6842 6.1852 1.8346 17 6 12.5084 6.2038 2.9279 18 1 12.5978 5.3268 3.5519 19 6 13.2291 7.3499 3.2344 20 7 13.6870 7.5327 4.4547 21 14 13.5491 8.6327 1.9147 22 1 12.5011 9.6827 1.9805 23 1 14.8818 9.2490 2.1364 24 1 13.5189 7.9862 0.5782 25 6 11.0652 7.4254 1.3499 26 6 9.5426 7.2435 1.3307 27 6 6.0638 1.8330 0.0015 28 6 5.4634 0.5908 0.0015 29 7 4.1498 0.4717 0.0006 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 3.2182 3.6702 -0.0104 36 1 7.7733 3.6866 0.0024 37 1 9.3226 5.2194 -1.5496 38 1 9.0715 7.0398 -1.3922 39 1 9.5400 4.4852 2.1194 40 1 9.6638 3.8481 0.4592 41 1 11.7856 4.9856 0.1118 42 1 11.8971 4.1019 1.6557 43 1 14.1903 8.3337 4.6689 44 1 11.4200 7.6412 0.3420 45 1 11.3264 8.2484 2.0153 46 1 9.0795 8.0924 0.8275 47 1 9.1700 7.1741 2.3527 48 1 7.1403 1.9204 0.0016 49 1 6.0781 -0.2972 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016816778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:10 Heat of formation + Delta-G solvation = 16.691343 kcal Electronic energy + Delta-G solvation = -29552.725353 eV Core-core repulsion = 25481.913843 eV Total energy + Delta-G solvation = -4070.811511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.23525 -40.08141 -38.82392 -38.07526 -35.84026 -33.70875 -32.76433 -32.41503 -31.70481 -30.57235 -30.26805 -28.73069 -25.66479 -24.25195 -23.77506 -23.50082 -23.07565 -21.98439 -21.14955 -20.73648 -19.15442 -18.41968 -17.67563 -16.93655 -16.70879 -16.53216 -16.15561 -15.94092 -15.24617 -15.15730 -14.85425 -14.34994 -14.31741 -14.23112 -14.19683 -13.91780 -13.75216 -13.10040 -12.98438 -12.95688 -12.77077 -12.44255 -12.35622 -12.18410 -11.96893 -11.93872 -11.75035 -11.32920 -11.19310 -10.82747 -10.66273 -10.57153 -10.33729 -10.33415 -10.05419 -10.01577 -9.84748 -9.58887 -9.47072 -8.96400 -8.82835 -8.52714 -6.97428 -5.97023 -3.33198 0.30334 0.71400 2.42563 2.55641 2.88663 3.30479 3.42140 3.47176 3.49919 3.84165 3.97042 4.16822 4.49410 4.51030 4.55182 4.58637 4.61104 4.68434 4.73467 4.86431 4.91447 4.95065 5.06876 5.20840 5.24796 5.27648 5.35178 5.39715 5.40204 5.60306 5.60615 5.65975 5.80095 5.85188 5.87268 5.87785 5.99915 6.10388 6.26905 6.30086 6.34181 6.40198 6.56466 6.65445 6.66020 6.81642 6.91254 7.21786 7.35882 7.89395 7.95592 8.31222 8.92980 9.70378 10.08079 11.18882 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.001946 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.486667 B =14386.075541 C =14782.897499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.304 6.304 4 C 0.322 3.678 5 C -0.132 4.132 6 C -0.049 4.049 7 C 0.561 3.439 8 O -0.526 6.526 9 N -0.685 5.685 10 C 0.072 3.928 11 H 0.136 0.864 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.100 4.100 15 C 0.153 3.847 16 N -0.603 5.603 17 C -0.262 4.262 18 H 0.084 0.916 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.131 3.869 26 C -0.099 4.099 27 C -0.182 4.182 28 C 0.140 3.860 29 N -0.528 5.528 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.064 0.936 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.143 0.857 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 -15.045 -12.252 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.212 6.212 4 C 0.143 3.857 5 C -0.154 4.154 6 C -0.060 4.060 7 C 0.347 3.653 8 O -0.402 6.402 9 N -0.335 5.335 10 C -0.033 4.033 11 H 0.154 0.846 12 C -0.220 4.220 13 C -0.101 4.101 14 C -0.139 4.139 15 C 0.027 3.973 16 N -0.327 5.327 17 C -0.390 4.390 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.713 3.287 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.006 3.994 26 C -0.139 4.139 27 C -0.203 4.203 28 C -0.015 4.015 29 N -0.252 5.252 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.173 0.827 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.160 0.840 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.736 -14.881 -12.124 28.998 hybrid contribution 1.009 0.963 -0.697 1.560 sum -20.727 -13.918 -12.821 28.066 Atomic orbital electron populations 1.21832 0.92860 1.02987 1.03482 1.22648 0.94885 0.80767 1.02615 1.86265 1.16388 1.30947 1.87555 1.19629 0.84316 0.89403 0.92387 1.21130 0.94558 0.96514 1.03206 1.20115 0.93345 0.93737 0.98789 1.18020 0.82358 0.88046 0.76886 1.90791 1.61038 1.39404 1.49016 1.45259 1.05903 1.08878 1.73416 1.21926 0.90261 0.85494 1.05655 0.84613 1.23585 1.01469 1.03346 0.93643 1.21946 0.95024 0.98673 0.94417 1.21644 0.98758 0.93203 1.00279 1.20856 0.91523 0.89551 0.95376 1.44264 1.53188 1.02157 1.33053 1.18919 1.18318 1.01378 1.00427 0.89804 1.25299 0.97908 0.97985 0.96314 1.69838 1.39660 1.27886 1.17624 0.86940 0.76372 0.81630 0.83783 1.21644 1.23176 1.19506 1.21295 0.90203 0.90398 0.97538 1.21705 0.99149 0.93212 0.99795 1.22183 1.01321 0.92723 1.04062 1.22391 0.88930 0.97278 0.92911 1.67222 1.06872 1.33307 1.17826 0.90191 0.91526 0.91567 0.91452 0.91504 0.82731 0.76102 0.88715 0.88110 0.91143 0.93276 0.95828 0.91710 0.92764 0.95524 0.90913 0.92457 0.91018 0.83970 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.07 0.48 6.03 37.16 0.22 0.71 16 3 O -0.30 -3.08 10.12 -18.77 -0.19 -3.27 16 4 C 0.32 3.42 7.49 -17.16 -0.13 3.29 16 5 C -0.13 -1.46 9.61 -38.84 -0.37 -1.83 16 6 C -0.05 -0.52 5.91 -104.68 -0.62 -1.14 16 7 C 0.56 7.08 7.80 -12.19 -0.10 6.99 16 8 O -0.53 -8.44 16.01 5.35 0.09 -8.36 16 9 N -0.68 -7.67 5.30 -54.73 -0.29 -7.96 16 10 C 0.07 0.93 6.14 -68.01 -0.42 0.51 16 11 H 0.14 1.92 7.40 -51.93 -0.38 1.53 16 12 C -0.18 -2.25 9.86 -26.79 -0.26 -2.51 16 13 C -0.10 -1.44 1.94 -154.49 -0.30 -1.74 16 14 C -0.10 -1.45 5.37 -26.45 -0.14 -1.59 16 15 C 0.15 2.79 6.52 -3.67 -0.02 2.77 16 16 N -0.60 -13.73 2.71 -172.25 -0.47 -14.20 16 17 C -0.26 -7.14 10.00 -15.06 -0.15 -7.29 16 18 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 20 N -0.91 -27.50 13.97 55.49 0.78 -26.72 16 21 Si 0.88 22.04 24.40 -169.99 -4.15 17.89 16 22 H -0.29 -6.97 6.66 56.52 0.38 -6.60 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.60 6.65 56.52 0.38 -6.23 16 25 C 0.13 2.76 4.23 -3.67 -0.02 2.75 16 26 C -0.10 -1.70 5.83 -26.45 -0.15 -1.85 16 27 C -0.18 -1.43 9.61 -39.03 -0.38 -1.80 16 28 C 0.14 1.07 11.17 -17.62 -0.20 0.87 16 29 N -0.53 -5.13 9.18 -13.38 -0.12 -5.26 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.49 8.10 -51.92 -0.42 0.07 16 34 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.16 1.72 7.74 -52.49 -0.41 1.32 16 36 H 0.40 3.55 5.26 -40.82 -0.21 3.33 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.54 6.75 -51.93 -0.35 0.19 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.03 0.55 7.27 -51.92 -0.38 0.18 16 45 H 0.07 1.70 4.31 -51.93 -0.22 1.48 16 46 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.14 0.75 6.53 -52.49 -0.34 0.41 16 49 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -33.26 392.15 -8.57 -41.83 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.39 Total: 1.83 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.74 Total: -1.69 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.10 Total: -54.14 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.10 Total: -11.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.26 -8.57 -41.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016816778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.523 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds