Wall clock time and date at job start Wed Apr 1 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46780 * 2 1 4 4 C 1.35690 * 116.99654 * 179.97438 * 3 2 1 5 5 C 1.38884 * 119.62246 * 179.72888 * 4 3 2 6 6 C 1.39575 * 118.94863 * 179.74002 * 5 4 3 7 7 C 1.48159 * 120.89618 * 180.25968 * 6 5 4 8 8 O 1.21517 * 119.99853 * 0.27105 * 7 6 5 9 9 N 1.34773 * 120.00464 * 180.26772 * 7 6 5 10 10 C 1.46502 * 120.00408 * 179.97438 * 9 7 6 11 11 H 1.09001 * 115.55126 * 9.29404 * 10 9 7 12 12 C 1.53031 * 117.50090 * 223.61110 * 10 9 7 13 13 C 1.52811 * 117.50144 * 155.02562 * 10 9 7 14 14 C 1.53186 * 117.71684 * 359.86319 * 13 10 9 15 15 C 1.53353 * 108.77152 * 158.88826 * 14 13 10 16 16 N 1.46841 * 108.81655 * 51.30422 * 15 14 13 17 17 C 1.36939 * 120.38315 * 123.11785 * 16 15 14 18 18 H 1.08002 * 120.00176 * 331.80096 * 17 16 15 19 19 C 1.38810 * 119.99964 * 151.79899 * 17 16 15 20 20 N 1.31618 * 120.00039 * 159.30385 * 19 17 16 21 21 Si 1.86804 * 119.99872 * 339.30356 * 19 17 16 22 22 H 1.48505 * 109.47189 * 94.25036 * 21 19 17 23 23 H 1.48498 * 109.46929 * 214.24299 * 21 19 17 24 24 H 1.48494 * 109.47181 * 334.24619 * 21 19 17 25 25 C 1.46844 * 119.23629 * 303.10177 * 16 15 14 26 26 C 1.53184 * 117.71579 * 215.09748 * 13 10 9 27 27 C 1.39969 * 118.21346 * 0.52107 * 6 5 4 28 28 C 1.37975 * 119.13185 * 359.73488 * 27 6 5 29 29 N 1.31901 * 120.98119 * 0.02562 * 28 27 6 30 30 H 1.09000 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47063 * 299.99946 * 1 2 3 32 32 H 1.08998 * 109.46982 * 59.99978 * 1 2 3 33 33 H 1.09008 * 109.47218 * 119.99548 * 2 1 3 34 34 H 1.08995 * 109.47184 * 239.99645 * 2 1 3 35 35 H 1.08002 * 120.53029 * 359.97438 * 5 4 3 36 36 H 0.97000 * 119.99822 * 359.97438 * 9 7 6 37 37 H 1.08993 * 117.50515 * 359.97438 * 12 10 9 38 38 H 1.09005 * 117.49960 * 145.01398 * 12 10 9 39 39 H 1.09006 * 109.58228 * 278.67024 * 14 13 10 40 40 H 1.08992 * 109.58855 * 39.10054 * 14 13 10 41 41 H 1.09000 * 109.57673 * 291.50289 * 15 14 13 42 42 H 1.09002 * 109.57657 * 171.10154 * 15 14 13 43 43 H 0.96998 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.57854 * 297.11086 * 25 16 15 45 45 H 1.09000 * 109.58504 * 176.70074 * 25 16 15 46 46 H 1.09007 * 109.58334 * 320.90588 * 26 13 10 47 47 H 1.09005 * 109.58467 * 81.32980 * 26 13 10 48 48 H 1.08001 * 120.43181 * 179.71760 * 27 6 5 49 49 H 1.08005 * 119.50947 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3515 1.5252 0.0005 5 6 3.8739 2.8120 -0.0051 6 6 5.2596 2.9786 0.0010 7 6 5.8632 4.3317 0.0011 8 8 5.1496 5.3153 0.0007 9 7 7.2036 4.4717 0.0017 10 6 7.8004 5.8097 0.0012 11 1 7.1055 6.6345 0.1592 12 6 8.9863 6.0541 -0.9347 13 6 9.2097 5.9539 0.5741 14 6 9.8938 4.6921 1.1093 15 6 11.4094 4.9248 1.1330 16 7 11.6842 6.1852 1.8346 17 6 12.5084 6.2038 2.9279 18 1 12.5978 5.3268 3.5519 19 6 13.2291 7.3499 3.2344 20 7 13.6870 7.5327 4.4547 21 14 13.5491 8.6327 1.9147 22 1 12.5011 9.6827 1.9805 23 1 14.8818 9.2490 2.1364 24 1 13.5189 7.9862 0.5782 25 6 11.0652 7.4254 1.3499 26 6 9.5426 7.2435 1.3307 27 6 6.0638 1.8330 0.0015 28 6 5.4634 0.5908 0.0015 29 7 4.1498 0.4717 0.0006 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 3.2182 3.6702 -0.0104 36 1 7.7733 3.6866 0.0024 37 1 9.3226 5.2194 -1.5496 38 1 9.0715 7.0398 -1.3922 39 1 9.5400 4.4852 2.1194 40 1 9.6638 3.8481 0.4592 41 1 11.7856 4.9856 0.1118 42 1 11.8971 4.1019 1.6557 43 1 14.1903 8.3337 4.6689 44 1 11.4200 7.6412 0.3420 45 1 11.3264 8.2484 2.0153 46 1 9.0795 8.0924 0.8275 47 1 9.1700 7.1741 2.3527 48 1 7.1403 1.9204 0.0016 49 1 6.0781 -0.2972 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016816778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:08 Heat of formation + Delta-G solvation = -6.799590 kcal Electronic energy + Delta-G solvation = -29553.743996 eV Core-core repulsion = 25481.913843 eV Total energy + Delta-G solvation = -4071.830154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99902 -41.05656 -39.92013 -38.86361 -37.33436 -34.82177 -33.92177 -33.34204 -32.92016 -32.01303 -30.93293 -30.23104 -26.46889 -26.01496 -24.54915 -24.45663 -24.11662 -23.05845 -22.50068 -21.70664 -20.04129 -19.78157 -18.47900 -18.37664 -17.70498 -17.35609 -17.13553 -17.02823 -16.63154 -16.13970 -15.93675 -15.70629 -15.42737 -15.25282 -15.04387 -14.88853 -14.84432 -14.54636 -14.36289 -14.01347 -13.85734 -13.47410 -13.43977 -13.34744 -13.05259 -12.93512 -12.61854 -12.49357 -12.45861 -12.23450 -12.10842 -11.75042 -11.61687 -11.54495 -11.48564 -11.28216 -11.12014 -10.82929 -10.74767 -10.63100 -9.76223 -9.63303 -8.83994 -8.14748 -5.45601 -0.46988 0.04382 1.31592 1.42534 1.51789 1.63727 1.67471 2.10108 2.43598 2.68124 2.92309 3.08856 3.21447 3.35797 3.41189 3.70095 3.79510 3.83675 3.91007 3.91759 4.00000 4.02711 4.08396 4.16597 4.39618 4.44779 4.51207 4.56417 4.59178 4.69241 4.72423 4.81071 4.81771 4.87199 4.92720 4.94243 4.94309 4.95149 5.03048 5.12537 5.18202 5.23120 5.28545 5.31316 5.41947 5.54240 5.90759 6.15639 6.15898 6.33679 6.68541 6.96828 6.98619 7.67181 8.07198 9.05223 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.001946 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.486667 B =14386.075541 C =14782.897499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.321 6.321 4 C 0.310 3.690 5 C -0.152 4.152 6 C -0.060 4.060 7 C 0.562 3.438 8 O -0.568 6.568 9 N -0.672 5.672 10 C 0.080 3.920 11 H 0.122 0.878 12 C -0.160 4.160 13 C -0.117 4.117 14 C -0.088 4.088 15 C 0.146 3.854 16 N -0.618 5.618 17 C -0.246 4.246 18 H 0.051 0.949 19 C -0.038 4.038 20 N -0.959 5.959 21 Si 0.947 3.053 22 H -0.279 1.279 23 H -0.314 1.314 24 H -0.256 1.256 25 C 0.127 3.873 26 C -0.093 4.093 27 C -0.168 4.168 28 C 0.144 3.856 29 N -0.535 5.535 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.416 0.584 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.176 0.824 49 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 -16.949 -15.142 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.229 6.229 4 C 0.131 3.869 5 C -0.174 4.174 6 C -0.070 4.070 7 C 0.349 3.651 8 O -0.448 6.448 9 N -0.322 5.322 10 C -0.026 4.026 11 H 0.140 0.860 12 C -0.198 4.198 13 C -0.119 4.119 14 C -0.127 4.127 15 C 0.021 3.979 16 N -0.343 5.343 17 C -0.376 4.376 18 H 0.069 0.931 19 C -0.232 4.232 20 N -0.605 5.605 21 Si 0.776 3.224 22 H -0.206 1.206 23 H -0.243 1.243 24 H -0.180 1.180 25 C 0.002 3.998 26 C -0.133 4.133 27 C -0.188 4.188 28 C -0.012 4.012 29 N -0.260 5.260 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.256 0.744 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.193 0.807 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.309 -16.828 -15.062 31.745 hybrid contribution 1.138 1.419 0.232 1.834 sum -21.171 -15.409 -14.830 30.093 Atomic orbital electron populations 1.21854 0.91340 1.04314 1.03219 1.22839 0.96097 0.79691 1.02642 1.86250 1.16463 1.32546 1.87596 1.19680 0.84694 0.89468 0.93028 1.21094 0.95037 0.96475 1.04747 1.20010 0.93326 0.93525 1.00185 1.18320 0.82469 0.88378 0.75929 1.90773 1.62020 1.40948 1.51027 1.45110 1.05597 1.08840 1.72664 1.21717 0.89440 0.85995 1.05485 0.86035 1.23703 0.99328 1.04775 0.92008 1.21795 0.96678 0.97197 0.96198 1.21502 0.95642 0.94928 1.00623 1.21085 0.94218 0.87150 0.95403 1.44413 1.52850 1.04463 1.32554 1.18884 1.17871 0.99868 1.00984 0.93120 1.25934 0.98676 1.00624 0.97971 1.69976 1.41876 1.28989 1.19670 0.85890 0.75590 0.79432 0.81491 1.20596 1.24310 1.18026 1.21308 0.92721 0.88749 0.97007 1.21545 0.96199 0.95971 0.99554 1.22522 1.02644 0.91639 1.02034 1.23102 0.88434 0.98615 0.91026 1.67307 1.07921 1.32900 1.17831 0.88031 0.91873 0.91714 0.91496 0.91290 0.84193 0.74405 0.86353 0.87369 0.92814 0.88689 0.94047 0.92407 0.93121 0.94290 0.93830 0.90297 0.93212 0.80717 0.77664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.06 0.87 6.03 71.98 0.43 1.30 16 3 O -0.32 -6.52 10.12 -90.09 -0.91 -7.43 16 4 C 0.31 6.42 7.49 84.80 0.63 7.06 16 5 C -0.15 -3.34 9.61 22.75 0.22 -3.12 16 6 C -0.06 -1.16 5.91 -19.90 -0.12 -1.27 16 7 C 0.56 13.27 7.80 86.88 0.68 13.95 16 8 O -0.57 -18.15 16.01 -3.77 -0.06 -18.21 16 9 N -0.67 -12.79 5.30 -445.36 -2.36 -15.16 16 10 C 0.08 1.81 6.14 44.94 0.28 2.08 16 11 H 0.12 3.21 7.40 -2.39 -0.02 3.20 16 12 C -0.16 -3.20 9.86 30.55 0.30 -2.90 16 13 C -0.12 -3.02 1.94 -52.17 -0.10 -3.12 16 14 C -0.09 -2.26 5.37 30.77 0.17 -2.09 16 15 C 0.15 4.96 6.52 86.43 0.56 5.52 16 16 N -0.62 -27.62 2.71 -698.89 -1.89 -29.51 16 17 C -0.25 -13.68 10.00 84.03 0.84 -12.84 16 18 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 19 C -0.04 -2.18 5.23 84.86 0.44 -1.74 16 20 N -0.96 -60.27 13.97 21.65 0.30 -59.96 16 21 Si 0.95 46.15 24.40 68.60 1.67 47.82 16 22 H -0.28 -12.99 6.66 99.48 0.66 -12.32 16 23 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 24 H -0.26 -11.73 6.65 99.48 0.66 -11.06 16 25 C 0.13 5.15 4.23 86.43 0.37 5.52 16 26 C -0.09 -3.04 5.83 30.77 0.18 -2.86 16 27 C -0.17 -2.01 9.61 22.63 0.22 -1.79 16 28 C 0.14 1.66 11.17 84.62 0.94 2.61 16 29 N -0.53 -9.33 9.18 -309.14 -2.84 -12.17 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.92 8.10 -2.38 -0.02 0.90 16 34 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.14 3.36 7.74 -2.91 -0.02 3.34 16 36 H 0.42 5.29 5.26 -92.71 -0.49 4.80 16 37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.09 1.57 6.75 -2.39 -0.02 1.55 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 43 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.04 1.49 7.27 -2.38 -0.02 1.48 16 45 H 0.04 2.01 4.31 -2.39 -0.01 2.00 16 46 H 0.08 2.20 8.10 -2.38 -0.02 2.18 16 47 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 48 H 0.18 0.86 6.53 -2.91 -0.02 0.84 16 49 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -76.47 392.15 1.09 -75.38 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.39 Total: 13.60 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.78 Total: 5.63 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.79 Total: -116.80 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.97 Total: -25.64 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal Total: -76.47 1.09 -75.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016816778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.580 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds