Wall clock time and date at job start Wed Apr 1 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47070 * 2 1 4 4 C 1.35423 * 116.99975 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80149 * 359.97367 * 4 3 2 6 6 C 1.31877 * 121.80632 * 179.97438 * 5 4 3 7 7 C 1.38365 * 121.18075 * 359.97438 * 6 5 4 8 8 C 1.38337 * 119.45677 * 359.78583 * 7 6 5 9 9 C 1.39984 * 118.35123 * 0.47497 * 8 7 6 10 10 C 1.47520 * 120.59835 * 179.75537 * 9 8 7 11 11 O 1.21589 * 120.00228 * 179.72416 * 10 9 8 12 12 N 1.34780 * 120.00026 * 359.73155 * 10 9 8 13 13 C 1.46495 * 120.00133 * 180.02562 * 12 10 9 14 14 H 1.09004 * 115.56636 * 350.67403 * 13 12 10 15 15 C 1.53037 * 117.50588 * 136.38723 * 13 12 10 16 16 C 1.52844 * 59.98974 * 107.49439 * 15 13 12 17 17 C 1.53188 * 117.65610 * 252.27767 * 16 15 13 18 18 C 1.53347 * 108.76425 * 269.97426 * 17 16 15 19 19 N 1.46841 * 108.81787 * 308.69039 * 18 17 16 20 20 C 1.36936 * 120.38640 * 236.91891 * 19 18 17 21 21 H 1.08002 * 119.99646 * 28.89078 * 20 19 18 22 22 C 1.38809 * 120.00456 * 208.88947 * 20 19 18 23 23 N 1.31615 * 119.99806 * 17.84951 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 197.85349 * 22 20 19 25 25 H 1.48495 * 109.47352 * 59.99686 * 24 22 20 26 26 H 1.48506 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46973 * 299.99543 * 24 22 20 28 28 C 1.46850 * 119.23046 * 56.90244 * 19 18 17 29 29 C 1.53179 * 117.65815 * 107.70254 * 16 15 13 30 30 H 1.08999 * 109.47316 * 300.00794 * 1 2 3 31 31 H 1.09002 * 109.46564 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47316 * 239.99206 * 2 1 3 34 34 H 1.09002 * 109.46564 * 119.99679 * 2 1 3 35 35 H 1.07998 * 119.41320 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.26905 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.82465 * 180.23686 * 8 7 6 38 38 H 0.96999 * 120.00046 * 359.97438 * 12 10 9 39 39 H 1.08996 * 117.49995 * 0.02562 * 15 13 12 40 40 H 1.09001 * 117.50229 * 214.98250 * 15 13 12 41 41 H 1.08999 * 109.58832 * 29.75743 * 17 16 15 42 42 H 1.09002 * 109.58719 * 150.18883 * 17 16 15 43 43 H 1.09005 * 109.57970 * 188.89781 * 18 17 16 44 44 H 1.09001 * 109.58164 * 68.49621 * 18 17 16 45 45 H 0.96999 * 120.00309 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.57793 * 183.29583 * 28 19 18 47 47 H 1.09002 * 109.69161 * 62.96259 * 28 19 18 48 48 H 1.09009 * 109.58744 * 209.80435 * 29 16 15 49 49 H 1.09001 * 109.58960 * 330.22947 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0016 6 6 5.4635 0.6002 0.0016 7 6 6.0626 1.8474 0.0001 8 6 5.2714 2.9822 -0.0061 9 6 3.8806 2.8229 -0.0003 10 6 2.9901 3.9990 -0.0010 11 8 1.7836 3.8480 -0.0010 12 7 3.5139 5.2408 -0.0018 13 6 2.6296 6.4088 -0.0019 14 1 1.5719 6.1980 -0.1607 15 6 2.9868 7.5659 0.9337 16 6 3.1830 7.7141 -0.5748 17 6 4.6186 7.7058 -1.1094 18 6 5.1449 9.1459 -1.1320 19 7 4.1732 9.9943 -1.8337 20 6 4.5544 10.7255 -2.9270 21 1 5.3586 10.3754 -3.5571 22 6 3.9072 11.9167 -3.2253 23 7 3.1897 12.5243 -2.3043 24 14 4.0546 12.6573 -4.9339 25 1 3.5229 11.6993 -5.9362 26 1 3.2766 13.9208 -4.9945 27 1 5.4821 12.9409 -5.2289 28 6 2.7879 10.0492 -1.3497 29 6 2.2137 8.6274 -1.3316 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 6.0820 -0.2852 0.0020 36 1 7.1391 1.9343 -0.0003 37 1 5.7156 3.9666 -0.0112 38 1 4.4763 5.3613 -0.0015 39 1 3.8801 7.4583 1.5490 40 1 2.1643 8.1160 1.3908 41 1 5.2471 7.0972 -0.4592 42 1 4.6300 7.2965 -2.1196 43 1 6.1012 9.1772 -1.6542 44 1 5.2723 9.5044 -0.1106 45 1 2.7371 13.3566 -2.5129 46 1 2.1930 10.6749 -2.0151 47 1 2.7670 10.4645 -0.3421 48 1 2.0956 8.2679 -2.3539 49 1 1.2465 8.6302 -0.8290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016956888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:16 Heat of formation + Delta-G solvation = 12.388463 kcal Electronic energy + Delta-G solvation = -30116.127549 eV Core-core repulsion = 26045.129452 eV Total energy + Delta-G solvation = -4070.998097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.18275 -39.65578 -38.33254 -38.14420 -35.46100 -33.64771 -32.48245 -32.30179 -31.50866 -30.31787 -29.94295 -28.25372 -25.18122 -24.38178 -24.26418 -22.59806 -22.44414 -22.07229 -20.98221 -20.34712 -18.90706 -18.25102 -17.74010 -17.24797 -16.58143 -16.43461 -15.85188 -15.41759 -14.95457 -14.86851 -14.68482 -14.16759 -14.06973 -13.99044 -13.65216 -13.46234 -13.34294 -13.09374 -12.93469 -12.68688 -12.65803 -12.61437 -12.21906 -11.74884 -11.64000 -11.59461 -11.32083 -11.03168 -10.96027 -10.71890 -10.45277 -10.35534 -10.32655 -10.30645 -9.95659 -9.83782 -9.67834 -9.60450 -9.33582 -8.87840 -8.44307 -8.40446 -6.64032 -5.78617 -3.21886 0.35873 0.88595 2.70947 2.74666 3.01635 3.38378 3.44556 3.45961 3.53547 3.89447 4.21898 4.34904 4.45018 4.49948 4.60107 4.74901 4.77181 4.86737 4.99230 5.04491 5.12193 5.14928 5.17691 5.39537 5.41510 5.44301 5.49311 5.61390 5.64181 5.65326 5.84280 5.88202 5.98173 6.06973 6.07721 6.10417 6.28981 6.43839 6.59231 6.61767 6.65485 6.70383 6.83941 6.95997 6.97934 7.36568 7.37745 7.52832 7.68071 7.79489 8.22908 8.46828 9.22024 9.85664 10.42246 11.29102 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002242 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.045197 B =12484.263216 C =13054.457542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.375 3.625 5 N -0.547 5.547 6 C 0.165 3.835 7 C -0.220 4.220 8 C -0.008 4.008 9 C -0.208 4.208 10 C 0.565 3.435 11 O -0.516 6.516 12 N -0.693 5.693 13 C 0.072 3.928 14 H 0.133 0.867 15 C -0.182 4.182 16 C -0.097 4.097 17 C -0.097 4.097 18 C 0.150 3.850 19 N -0.589 5.589 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.173 3.827 29 C -0.105 4.105 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.090 0.910 47 H 0.018 0.982 48 H 0.060 0.940 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -24.538 7.361 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.195 3.805 5 N -0.271 5.271 6 C 0.008 3.992 7 C -0.241 4.241 8 C -0.034 4.034 9 C -0.214 4.214 10 C 0.351 3.649 11 O -0.392 6.392 12 N -0.344 5.344 13 C -0.034 4.034 14 H 0.151 0.849 15 C -0.221 4.221 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.023 3.977 19 N -0.311 5.311 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.047 3.953 29 C -0.145 4.145 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.037 0.963 48 H 0.079 0.921 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.471 -25.113 7.344 26.207 hybrid contribution 1.122 1.058 -0.760 1.719 sum 2.593 -24.055 6.585 25.075 Atomic orbital electron populations 1.21793 0.92726 1.02560 1.03858 1.22705 0.95304 0.81168 1.02250 1.86542 1.15457 1.29922 1.85368 1.19815 0.84751 0.88383 0.87593 1.67503 1.06656 1.32377 1.20614 1.22675 0.89165 0.97694 0.89681 1.21942 1.01829 0.92874 1.07440 1.21683 0.91213 1.00140 0.90365 1.20061 0.94251 0.92475 1.14626 1.17710 0.87803 0.82358 0.77041 1.90823 1.14152 1.85682 1.48579 1.45262 1.09770 1.04664 1.74675 1.21915 0.95307 0.80456 1.05704 0.84910 1.23538 1.03393 1.01341 0.93785 1.21981 0.97686 0.95762 0.94377 1.21631 0.92420 0.99921 0.99680 1.20835 0.92827 0.88573 0.95447 1.43960 1.04346 1.50635 1.32180 1.19132 1.18228 1.00040 1.01008 0.91874 1.25043 1.01035 0.95671 0.97818 1.70021 1.35866 1.17231 1.31386 0.86393 0.77651 0.78208 0.84651 1.21024 1.21643 1.20905 1.20763 0.85763 0.90642 0.98139 1.21877 0.95532 0.98400 0.98677 0.91462 0.91404 0.90429 0.91620 0.91656 0.81829 0.83732 0.83776 0.76722 0.89104 0.88281 0.93801 0.91733 0.92759 0.96311 0.93563 0.89186 0.96343 0.92110 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.61 6.03 37.16 0.22 0.84 16 3 O -0.27 -3.71 8.22 -39.73 -0.33 -4.04 16 4 C 0.37 4.80 7.51 -16.61 -0.12 4.67 16 5 N -0.55 -5.85 9.21 -12.98 -0.12 -5.97 16 6 C 0.16 1.24 11.17 -17.49 -0.20 1.04 16 7 C -0.22 -1.48 10.09 -39.50 -0.40 -1.88 16 8 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.54 5.90 -104.69 -0.62 -3.16 16 10 C 0.56 8.30 7.77 -12.48 -0.10 8.20 16 11 O -0.52 -9.42 14.76 -16.48 -0.24 -9.67 16 12 N -0.69 -9.06 5.30 -54.88 -0.29 -9.36 16 13 C 0.07 1.07 6.14 -67.96 -0.42 0.65 16 14 H 0.13 2.17 7.40 -51.93 -0.38 1.78 16 15 C -0.18 -2.64 9.86 -26.79 -0.26 -2.90 16 16 C -0.10 -1.59 1.94 -154.44 -0.30 -1.89 16 17 C -0.10 -1.58 5.38 -26.45 -0.14 -1.72 16 18 C 0.15 3.01 6.51 -3.68 -0.02 2.99 16 19 N -0.59 -14.45 2.94 -172.26 -0.51 -14.95 16 20 C -0.25 -6.88 9.54 -15.06 -0.14 -7.03 16 21 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.08 4.88 -17.43 -0.09 0.00 16 23 N -0.90 -25.93 11.23 55.49 0.62 -25.31 16 24 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.17 4.06 5.40 -3.68 -0.02 4.04 16 29 C -0.11 -2.01 5.83 -26.46 -0.15 -2.16 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.89 6.52 -52.48 -0.34 0.55 16 38 H 0.40 4.19 5.23 -40.82 -0.21 3.98 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.04 0.57 6.75 -51.93 -0.35 0.21 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.07 7.92 -51.93 -0.41 0.65 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 49 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -33.40 396.09 -10.15 -43.55 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.47 Total: 2.89 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.75 Total: 0.35 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.29 Total: -55.58 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.57 Total: -13.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.40 -10.15 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016956888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.941 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds