Wall clock time and date at job start Wed Apr 1 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47070 * 2 1 4 4 C 1.35423 * 116.99975 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80149 * 359.97367 * 4 3 2 6 6 C 1.31877 * 121.80632 * 179.97438 * 5 4 3 7 7 C 1.38365 * 121.18075 * 359.97438 * 6 5 4 8 8 C 1.38337 * 119.45677 * 359.78583 * 7 6 5 9 9 C 1.39984 * 118.35123 * 0.47497 * 8 7 6 10 10 C 1.47520 * 120.59835 * 179.75537 * 9 8 7 11 11 O 1.21589 * 120.00228 * 179.72416 * 10 9 8 12 12 N 1.34780 * 120.00026 * 359.73155 * 10 9 8 13 13 C 1.46495 * 120.00133 * 180.02562 * 12 10 9 14 14 H 1.09004 * 115.56636 * 350.67403 * 13 12 10 15 15 C 1.53037 * 117.50588 * 136.38723 * 13 12 10 16 16 C 1.52844 * 59.98974 * 107.49439 * 15 13 12 17 17 C 1.53188 * 117.65610 * 252.27767 * 16 15 13 18 18 C 1.53347 * 108.76425 * 269.97426 * 17 16 15 19 19 N 1.46841 * 108.81787 * 308.69039 * 18 17 16 20 20 C 1.36936 * 120.38640 * 236.91891 * 19 18 17 21 21 H 1.08002 * 119.99646 * 28.89078 * 20 19 18 22 22 C 1.38809 * 120.00456 * 208.88947 * 20 19 18 23 23 N 1.31615 * 119.99806 * 17.84951 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 197.85349 * 22 20 19 25 25 H 1.48495 * 109.47352 * 59.99686 * 24 22 20 26 26 H 1.48506 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46973 * 299.99543 * 24 22 20 28 28 C 1.46850 * 119.23046 * 56.90244 * 19 18 17 29 29 C 1.53179 * 117.65815 * 107.70254 * 16 15 13 30 30 H 1.08999 * 109.47316 * 300.00794 * 1 2 3 31 31 H 1.09002 * 109.46564 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47316 * 239.99206 * 2 1 3 34 34 H 1.09002 * 109.46564 * 119.99679 * 2 1 3 35 35 H 1.07998 * 119.41320 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.26905 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.82465 * 180.23686 * 8 7 6 38 38 H 0.96999 * 120.00046 * 359.97438 * 12 10 9 39 39 H 1.08996 * 117.49995 * 0.02562 * 15 13 12 40 40 H 1.09001 * 117.50229 * 214.98250 * 15 13 12 41 41 H 1.08999 * 109.58832 * 29.75743 * 17 16 15 42 42 H 1.09002 * 109.58719 * 150.18883 * 17 16 15 43 43 H 1.09005 * 109.57970 * 188.89781 * 18 17 16 44 44 H 1.09001 * 109.58164 * 68.49621 * 18 17 16 45 45 H 0.96999 * 120.00309 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.57793 * 183.29583 * 28 19 18 47 47 H 1.09002 * 109.69161 * 62.96259 * 28 19 18 48 48 H 1.09009 * 109.58744 * 209.80435 * 29 16 15 49 49 H 1.09001 * 109.58960 * 330.22947 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0016 6 6 5.4635 0.6002 0.0016 7 6 6.0626 1.8474 0.0001 8 6 5.2714 2.9822 -0.0061 9 6 3.8806 2.8229 -0.0003 10 6 2.9901 3.9990 -0.0010 11 8 1.7836 3.8480 -0.0010 12 7 3.5139 5.2408 -0.0018 13 6 2.6296 6.4088 -0.0019 14 1 1.5719 6.1980 -0.1607 15 6 2.9868 7.5659 0.9337 16 6 3.1830 7.7141 -0.5748 17 6 4.6186 7.7058 -1.1094 18 6 5.1449 9.1459 -1.1320 19 7 4.1732 9.9943 -1.8337 20 6 4.5544 10.7255 -2.9270 21 1 5.3586 10.3754 -3.5571 22 6 3.9072 11.9167 -3.2253 23 7 3.1897 12.5243 -2.3043 24 14 4.0546 12.6573 -4.9339 25 1 3.5229 11.6993 -5.9362 26 1 3.2766 13.9208 -4.9945 27 1 5.4821 12.9409 -5.2289 28 6 2.7879 10.0492 -1.3497 29 6 2.2137 8.6274 -1.3316 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 6.0820 -0.2852 0.0020 36 1 7.1391 1.9343 -0.0003 37 1 5.7156 3.9666 -0.0112 38 1 4.4763 5.3613 -0.0015 39 1 3.8801 7.4583 1.5490 40 1 2.1643 8.1160 1.3908 41 1 5.2471 7.0972 -0.4592 42 1 4.6300 7.2965 -2.1196 43 1 6.1012 9.1772 -1.6542 44 1 5.2723 9.5044 -0.1106 45 1 2.7371 13.3566 -2.5129 46 1 2.1930 10.6749 -2.0151 47 1 2.7670 10.4645 -0.3421 48 1 2.0956 8.2679 -2.3539 49 1 1.2465 8.6302 -0.8290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016956888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:15 Heat of formation + Delta-G solvation = -8.898318 kcal Electronic energy + Delta-G solvation = -30117.050613 eV Core-core repulsion = 26045.129452 eV Total energy + Delta-G solvation = -4071.921162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.98827 -40.82129 -39.50243 -39.03498 -37.10185 -34.77905 -33.77655 -33.01044 -32.95057 -31.64735 -30.99629 -29.89405 -26.25338 -25.92821 -25.07487 -24.05771 -23.28520 -23.22124 -22.49110 -21.53771 -19.86247 -19.62566 -18.81162 -18.20250 -17.98742 -17.38888 -17.02389 -16.71426 -16.09009 -15.93641 -15.80547 -15.63090 -15.29315 -14.96638 -14.92523 -14.81011 -14.69374 -14.29470 -14.11354 -13.74223 -13.54436 -13.35147 -13.32308 -13.28065 -13.08664 -12.86398 -12.55561 -12.54424 -12.48382 -12.27629 -12.02291 -11.77211 -11.75824 -11.38493 -11.29361 -11.19931 -11.05621 -10.80785 -10.58273 -10.45686 -9.76028 -9.49048 -8.60858 -7.84940 -5.30857 -0.36708 0.23022 1.46732 1.49727 1.55919 1.79052 1.94163 2.01790 2.52486 2.74684 2.99240 3.23224 3.30022 3.62117 3.67377 3.74488 3.81696 3.87628 3.97028 4.00384 4.04126 4.12146 4.14110 4.20567 4.38699 4.47436 4.54183 4.63568 4.74403 4.79604 4.85485 4.86527 4.89828 4.92247 4.95120 5.04486 5.07569 5.09660 5.17241 5.17490 5.32325 5.39637 5.42266 5.49702 5.57173 5.66960 5.78654 6.22490 6.42530 6.47360 6.73785 7.17705 7.18807 7.90597 8.41375 9.20033 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002242 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.045197 B =12484.263216 C =13054.457542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.301 6.301 4 C 0.350 3.650 5 N -0.561 5.561 6 C 0.164 3.836 7 C -0.205 4.205 8 C -0.004 4.004 9 C -0.236 4.236 10 C 0.563 3.437 11 O -0.563 6.563 12 N -0.681 5.681 13 C 0.085 3.915 14 H 0.116 0.884 15 C -0.167 4.167 16 C -0.113 4.113 17 C -0.083 4.083 18 C 0.145 3.855 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.281 1.281 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.181 3.819 29 C -0.095 4.095 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.202 0.798 36 H 0.186 0.814 37 H 0.171 0.829 38 H 0.412 0.588 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.249 0.751 46 H 0.052 0.948 47 H 0.000 1.000 48 H 0.046 0.954 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -26.869 7.807 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.207 6.207 4 C 0.171 3.829 5 N -0.286 5.286 6 C 0.008 3.992 7 C -0.225 4.225 8 C -0.030 4.030 9 C -0.242 4.242 10 C 0.351 3.649 11 O -0.443 6.443 12 N -0.332 5.332 13 C -0.022 4.022 14 H 0.134 0.866 15 C -0.205 4.205 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.019 3.981 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.055 3.945 29 C -0.134 4.134 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.219 0.781 36 H 0.203 0.797 37 H 0.188 0.812 38 H 0.250 0.750 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.019 0.981 48 H 0.065 0.935 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.425 -27.472 7.796 28.897 hybrid contribution 0.330 1.690 -0.863 1.926 sum 4.755 -25.782 6.933 27.118 Atomic orbital electron populations 1.21814 0.91897 1.04057 1.02738 1.22851 0.95995 0.80215 1.02565 1.86504 1.16716 1.31628 1.85821 1.20069 0.84707 0.89279 0.88888 1.67557 1.08056 1.31771 1.21201 1.23471 0.88342 0.99798 0.87613 1.22406 1.03608 0.91654 1.04788 1.22047 0.89597 1.02226 0.89124 1.20007 0.95529 0.91120 1.17583 1.18162 0.87624 0.83234 0.75885 1.90795 1.16293 1.86357 1.50820 1.45095 1.10251 1.03696 1.74161 1.21618 0.94838 0.80623 1.05077 0.86644 1.23625 1.04239 1.00111 0.92548 1.21838 0.97239 0.96617 0.95766 1.21468 0.92655 0.97662 1.00405 1.21017 0.92229 0.90001 0.94807 1.44228 1.05493 1.51094 1.32338 1.19471 1.17828 1.00023 1.01893 0.91648 1.25774 1.01425 0.96435 1.01008 1.70170 1.37176 1.17520 1.33059 0.85407 0.77802 0.77041 0.80613 1.20747 1.22169 1.19901 1.20510 0.85520 0.92549 0.95892 1.21632 0.96797 0.96245 0.98725 0.92408 0.92602 0.87577 0.91330 0.91125 0.78090 0.79699 0.81184 0.74970 0.86880 0.88225 0.89381 0.92502 0.92479 0.96281 0.94170 0.92927 0.98146 0.93522 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.06 1.20 6.03 71.98 0.43 1.63 16 3 O -0.30 -8.63 8.22 -66.37 -0.55 -9.17 16 4 C 0.35 8.83 7.51 85.13 0.64 9.47 16 5 N -0.56 -11.05 9.21 -308.00 -2.84 -13.89 16 6 C 0.16 1.86 11.17 84.72 0.95 2.80 16 7 C -0.20 -1.79 10.09 22.32 0.23 -1.56 16 8 C 0.00 -0.06 9.64 22.72 0.22 0.16 16 9 C -0.24 -5.47 5.90 -19.91 -0.12 -5.59 16 10 C 0.56 16.24 7.77 86.69 0.67 16.91 16 11 O -0.56 -21.19 14.76 16.82 0.25 -20.94 16 12 N -0.68 -16.41 5.30 -445.79 -2.36 -18.77 16 13 C 0.08 2.41 6.14 44.98 0.28 2.68 16 14 H 0.12 3.78 7.40 -2.38 -0.02 3.76 16 15 C -0.17 -4.47 9.86 30.55 0.30 -4.16 16 16 C -0.11 -3.55 1.94 -52.14 -0.10 -3.66 16 17 C -0.08 -2.48 5.38 30.77 0.17 -2.32 16 18 C 0.14 5.62 6.51 86.43 0.56 6.19 16 19 N -0.61 -30.10 2.94 -698.90 -2.05 -32.15 16 20 C -0.26 -14.30 9.54 84.03 0.80 -13.50 16 21 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 22 C -0.05 -2.85 4.88 84.86 0.41 -2.44 16 23 N -0.93 -55.43 11.23 21.65 0.24 -55.19 16 24 Si 0.96 45.01 29.59 68.60 2.03 47.04 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 C 0.18 8.76 5.40 86.43 0.47 9.23 16 29 C -0.09 -3.66 5.83 30.77 0.18 -3.48 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 34 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.17 1.26 6.52 -2.91 -0.02 1.24 16 38 H 0.41 7.16 5.23 -92.71 -0.48 6.67 16 39 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.09 1.86 6.75 -2.39 -0.02 1.85 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.15 7.92 -2.38 -0.02 2.13 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.05 2.92 5.93 -2.38 -0.01 2.91 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -77.43 396.09 2.03 -75.40 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.48 Total: 17.09 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.83 Total: 10.58 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -7.01 Total: -120.00 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.30 Total: -30.11 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.43 2.03 -75.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016956888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.502 kcal (2) G-P(sol) polarization free energy of solvation -77.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds