Wall clock time and date at job start Wed Apr 1 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46908 * 2 1 4 4 C 1.35433 * 117.00049 * 180.02562 * 3 2 1 5 5 N 1.32234 * 119.79658 * 359.71950 * 4 3 2 6 6 C 1.31879 * 121.79647 * 179.70982 * 5 4 3 7 7 C 1.38353 * 121.18715 * 0.57669 * 6 5 4 8 8 C 1.38335 * 119.45836 * 359.71534 * 7 6 5 9 9 C 1.39986 * 118.34758 * 0.02562 * 8 7 6 10 10 C 1.47527 * 120.59819 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00472 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99966 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.55019 * 9.32337 * 13 12 10 15 15 C 1.53026 * 117.50459 * 223.58912 * 13 12 10 16 16 C 1.52821 * 117.50088 * 155.00278 * 13 12 10 17 17 C 1.53186 * 117.71329 * 359.85918 * 16 13 12 18 18 C 1.53343 * 108.76825 * 158.88992 * 17 16 13 19 19 N 1.46844 * 108.81729 * 51.30585 * 18 17 16 20 20 C 1.36939 * 120.37889 * 123.12034 * 19 18 17 21 21 H 1.08000 * 120.00390 * 331.80526 * 20 19 18 22 22 C 1.38809 * 119.99739 * 151.79836 * 20 19 18 23 23 N 1.31628 * 119.99874 * 159.29956 * 22 20 19 24 24 Si 1.86800 * 120.00282 * 339.30596 * 22 20 19 25 25 H 1.48501 * 109.47344 * 94.24262 * 24 22 20 26 26 H 1.48495 * 109.47398 * 214.24469 * 24 22 20 27 27 H 1.48504 * 109.47154 * 334.24248 * 24 22 20 28 28 C 1.46841 * 119.23735 * 303.10219 * 19 18 17 29 29 C 1.53179 * 117.71258 * 215.10489 * 16 13 12 30 30 H 1.08993 * 109.47283 * 300.00666 * 1 2 3 31 31 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47006 * 60.00079 * 1 2 3 33 33 H 1.08995 * 109.47139 * 119.99470 * 2 1 3 34 34 H 1.09000 * 109.47393 * 240.00187 * 2 1 3 35 35 H 1.08010 * 119.40438 * 180.29382 * 6 5 4 36 36 H 1.08004 * 120.27315 * 179.74462 * 7 6 5 37 37 H 1.07996 * 120.82497 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99295 * 0.02562 * 12 10 9 39 39 H 1.08999 * 117.50099 * 359.97438 * 15 13 12 40 40 H 1.08999 * 117.50519 * 145.04532 * 15 13 12 41 41 H 1.08994 * 109.58965 * 278.67474 * 17 16 13 42 42 H 1.09000 * 109.58372 * 39.10696 * 17 16 13 43 43 H 1.09005 * 109.58085 * 291.50886 * 18 17 16 44 44 H 1.09003 * 109.58397 * 171.11361 * 18 17 16 45 45 H 0.97003 * 119.99599 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58317 * 297.10705 * 28 19 18 47 47 H 1.08997 * 109.58203 * 176.70212 * 28 19 18 48 48 H 1.08996 * 109.58892 * 320.90037 * 29 16 13 49 49 H 1.09005 * 109.59252 * 81.33418 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4733 0.0046 6 6 5.4634 0.6004 -0.0014 7 6 6.0625 1.8475 -0.0015 8 6 5.2713 2.9823 -0.0011 9 6 3.8806 2.8229 -0.0002 10 6 2.9900 3.9990 0.0008 11 8 1.7835 3.8481 0.0021 12 7 3.5137 5.2410 0.0002 13 6 2.6294 6.4089 0.0006 14 1 1.5720 6.1979 0.1607 15 6 2.9859 7.5656 -0.9356 16 6 3.1832 7.7132 0.5729 17 6 4.6190 7.7040 1.1066 18 6 5.1460 9.1439 1.1297 19 7 4.1751 9.9924 1.8322 20 6 4.5575 10.7235 2.9251 21 1 5.3697 10.3790 3.5481 22 6 3.9014 11.9076 3.2322 23 7 3.9634 12.3970 4.4526 24 14 2.9303 12.8064 1.9137 25 1 1.5052 12.3946 1.9811 26 1 3.0332 14.2712 2.1351 27 1 3.4806 12.4681 0.5765 28 6 2.7895 10.0482 1.3492 29 6 2.2148 8.6266 1.3307 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 6.0820 -0.2851 -0.0017 36 1 7.1390 1.9344 -0.0023 37 1 5.7156 3.9666 -0.0008 38 1 4.4762 5.3613 -0.0012 39 1 3.8787 7.4577 -1.5515 40 1 2.1630 8.1159 -1.3919 41 1 4.6309 7.2944 2.1165 42 1 5.2469 7.0955 0.4557 43 1 5.2730 9.5028 0.1083 44 1 6.1027 9.1745 1.6511 45 1 3.5045 13.2242 4.6672 46 1 2.7704 10.4630 0.3413 47 1 2.1954 10.6739 2.0151 48 1 1.2473 8.6301 0.8287 49 1 2.0971 8.2667 2.3529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016956890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:21 Heat of formation + Delta-G solvation = 18.494464 kcal Electronic energy + Delta-G solvation = -30206.658719 eV Core-core repulsion = 26135.925397 eV Total energy + Delta-G solvation = -4070.733321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.22358 -39.78821 -38.42861 -38.25445 -35.73633 -33.71049 -32.52154 -32.33071 -31.65931 -30.54695 -30.28937 -28.64527 -25.22420 -24.35322 -24.20922 -23.04512 -22.59388 -22.13789 -21.12856 -20.53801 -18.96084 -18.43130 -17.80909 -17.29018 -16.61146 -16.52194 -15.99857 -15.48143 -15.22051 -14.93900 -14.78728 -14.27216 -14.18738 -14.04284 -13.88361 -13.77185 -13.55236 -12.96815 -12.92107 -12.89687 -12.70080 -12.64688 -12.32389 -12.14321 -11.89778 -11.77457 -11.69966 -11.21697 -11.05027 -10.79345 -10.62372 -10.38491 -10.36243 -10.29698 -9.98575 -9.90983 -9.76597 -9.51180 -9.43883 -8.92664 -8.71718 -8.43628 -6.94722 -5.95162 -3.31046 0.32214 0.85595 2.67728 2.69201 2.93539 3.32427 3.48644 3.48972 3.51835 3.86265 4.06780 4.31332 4.40500 4.53032 4.56422 4.71516 4.74816 4.80664 4.84274 4.93267 4.96543 5.04529 5.10086 5.12870 5.29808 5.39180 5.40887 5.42807 5.58995 5.61844 5.73495 5.81742 5.84715 5.92115 5.94691 5.97870 6.04421 6.14574 6.31371 6.35691 6.42326 6.49750 6.60372 6.69742 6.70008 6.94666 6.95212 7.32281 7.46151 7.97859 8.15851 8.33194 8.95217 9.72504 10.10562 11.20802 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002337 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.892819 B =11977.550158 C =12724.252269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.375 3.625 5 N -0.547 5.547 6 C 0.166 3.834 7 C -0.220 4.220 8 C -0.008 4.008 9 C -0.209 4.209 10 C 0.566 3.434 11 O -0.515 6.515 12 N -0.694 5.694 13 C 0.078 3.922 14 H 0.135 0.865 15 C -0.184 4.184 16 C -0.102 4.102 17 C -0.098 4.098 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.261 4.261 21 H 0.084 0.916 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.131 3.869 29 C -0.098 4.098 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.397 0.603 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.262 0.738 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -25.064 -12.281 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.195 3.805 5 N -0.271 5.271 6 C 0.009 3.991 7 C -0.241 4.241 8 C -0.034 4.034 9 C -0.215 4.215 10 C 0.352 3.648 11 O -0.391 6.391 12 N -0.345 5.345 13 C -0.028 4.028 14 H 0.152 0.848 15 C -0.222 4.222 16 C -0.103 4.103 17 C -0.137 4.137 18 C 0.027 3.973 19 N -0.327 5.327 20 C -0.389 4.389 21 H 0.102 0.898 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.006 3.994 29 C -0.138 4.138 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.278 -25.679 -12.143 28.406 hybrid contribution 0.469 1.245 -0.702 1.505 sum 0.746 -24.433 -12.845 27.614 Atomic orbital electron populations 1.21793 0.92720 1.02583 1.03844 1.22708 0.95305 0.81138 1.02276 1.86540 1.15455 1.29965 1.85364 1.19815 0.84764 0.88380 0.87551 1.67510 1.06659 1.32361 1.20587 1.22684 0.89164 0.97722 0.89572 1.21944 1.01858 0.92867 1.07393 1.21676 0.91192 1.00140 0.90362 1.20036 0.94236 0.92424 1.14804 1.17716 0.87808 0.82336 0.76930 1.90826 1.14158 1.85674 1.48466 1.45250 1.09765 1.04620 1.74852 1.21840 0.95420 0.80424 1.05085 0.84757 1.23574 1.03521 1.01575 0.93575 1.21933 0.97699 0.96310 0.94398 1.21619 0.92227 0.99681 1.00216 1.20856 0.92818 0.88305 0.95321 1.44270 1.03618 1.51738 1.33096 1.18919 1.18712 1.00829 1.00454 0.89819 1.25304 0.98934 0.97012 0.96336 1.69847 1.45369 1.22266 1.17614 0.86934 0.79372 0.78600 0.83790 1.21635 1.23214 1.19491 1.21293 0.86601 0.94029 0.97505 1.21687 0.95648 0.96686 0.99765 0.91400 0.90409 0.91478 0.91583 0.91651 0.81795 0.83696 0.83780 0.76648 0.88864 0.88268 0.91229 0.93353 0.95862 0.91777 0.92785 0.95550 0.90954 0.92501 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.60 6.03 37.16 0.22 0.82 16 3 O -0.27 -3.62 8.22 -39.76 -0.33 -3.95 16 4 C 0.38 4.67 7.51 -16.61 -0.12 4.54 16 5 N -0.55 -5.68 9.21 -12.98 -0.12 -5.80 16 6 C 0.17 1.20 11.17 -17.49 -0.20 1.00 16 7 C -0.22 -1.41 10.09 -39.50 -0.40 -1.81 16 8 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.45 5.90 -104.69 -0.62 -3.07 16 10 C 0.57 7.95 7.77 -12.47 -0.10 7.85 16 11 O -0.52 -9.08 14.76 -16.48 -0.24 -9.33 16 12 N -0.69 -8.49 5.30 -54.93 -0.29 -8.78 16 13 C 0.08 1.08 6.14 -68.01 -0.42 0.66 16 14 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 15 C -0.18 -2.41 9.86 -26.80 -0.26 -2.67 16 16 C -0.10 -1.54 1.94 -154.49 -0.30 -1.84 16 17 C -0.10 -1.48 5.37 -26.46 -0.14 -1.62 16 18 C 0.15 2.86 6.51 -3.68 -0.02 2.83 16 19 N -0.60 -14.01 2.71 -172.26 -0.47 -14.48 16 20 C -0.26 -7.19 10.00 -15.06 -0.15 -7.34 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 24 Si 0.88 22.29 24.40 -169.99 -4.15 18.15 16 25 H -0.29 -7.06 6.66 56.52 0.38 -6.68 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.27 -6.68 6.65 56.52 0.38 -6.30 16 28 C 0.13 2.82 4.23 -3.67 -0.02 2.81 16 29 C -0.10 -1.74 5.83 -26.46 -0.15 -1.90 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16 37 H 0.14 0.81 6.52 -52.49 -0.34 0.47 16 38 H 0.40 3.85 5.22 -40.82 -0.21 3.63 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.56 6.75 -51.93 -0.35 0.21 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.19 7.92 -51.93 -0.41 0.77 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 46 H 0.03 0.56 7.27 -51.93 -0.38 0.18 16 47 H 0.07 1.72 4.31 -51.93 -0.22 1.50 16 48 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -34.74 389.79 -9.11 -43.85 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.40 Total: 1.90 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.76 Total: -0.46 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.10 Total: -56.04 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.57 Total: -13.27 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.15 Total: 18.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.74 -9.11 -43.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016956890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.345 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds