Wall clock time and date at job start Wed Apr 1 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46908 * 2 1 4 4 C 1.35433 * 117.00049 * 180.02562 * 3 2 1 5 5 N 1.32234 * 119.79658 * 359.71950 * 4 3 2 6 6 C 1.31879 * 121.79647 * 179.70982 * 5 4 3 7 7 C 1.38353 * 121.18715 * 0.57669 * 6 5 4 8 8 C 1.38335 * 119.45836 * 359.71534 * 7 6 5 9 9 C 1.39986 * 118.34758 * 0.02562 * 8 7 6 10 10 C 1.47527 * 120.59819 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00472 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99966 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.55019 * 9.32337 * 13 12 10 15 15 C 1.53026 * 117.50459 * 223.58912 * 13 12 10 16 16 C 1.52821 * 117.50088 * 155.00278 * 13 12 10 17 17 C 1.53186 * 117.71329 * 359.85918 * 16 13 12 18 18 C 1.53343 * 108.76825 * 158.88992 * 17 16 13 19 19 N 1.46844 * 108.81729 * 51.30585 * 18 17 16 20 20 C 1.36939 * 120.37889 * 123.12034 * 19 18 17 21 21 H 1.08000 * 120.00390 * 331.80526 * 20 19 18 22 22 C 1.38809 * 119.99739 * 151.79836 * 20 19 18 23 23 N 1.31628 * 119.99874 * 159.29956 * 22 20 19 24 24 Si 1.86800 * 120.00282 * 339.30596 * 22 20 19 25 25 H 1.48501 * 109.47344 * 94.24262 * 24 22 20 26 26 H 1.48495 * 109.47398 * 214.24469 * 24 22 20 27 27 H 1.48504 * 109.47154 * 334.24248 * 24 22 20 28 28 C 1.46841 * 119.23735 * 303.10219 * 19 18 17 29 29 C 1.53179 * 117.71258 * 215.10489 * 16 13 12 30 30 H 1.08993 * 109.47283 * 300.00666 * 1 2 3 31 31 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47006 * 60.00079 * 1 2 3 33 33 H 1.08995 * 109.47139 * 119.99470 * 2 1 3 34 34 H 1.09000 * 109.47393 * 240.00187 * 2 1 3 35 35 H 1.08010 * 119.40438 * 180.29382 * 6 5 4 36 36 H 1.08004 * 120.27315 * 179.74462 * 7 6 5 37 37 H 1.07996 * 120.82497 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99295 * 0.02562 * 12 10 9 39 39 H 1.08999 * 117.50099 * 359.97438 * 15 13 12 40 40 H 1.08999 * 117.50519 * 145.04532 * 15 13 12 41 41 H 1.08994 * 109.58965 * 278.67474 * 17 16 13 42 42 H 1.09000 * 109.58372 * 39.10696 * 17 16 13 43 43 H 1.09005 * 109.58085 * 291.50886 * 18 17 16 44 44 H 1.09003 * 109.58397 * 171.11361 * 18 17 16 45 45 H 0.97003 * 119.99599 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58317 * 297.10705 * 28 19 18 47 47 H 1.08997 * 109.58203 * 176.70212 * 28 19 18 48 48 H 1.08996 * 109.58892 * 320.90037 * 29 16 13 49 49 H 1.09005 * 109.59252 * 81.33418 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4733 0.0046 6 6 5.4634 0.6004 -0.0014 7 6 6.0625 1.8475 -0.0015 8 6 5.2713 2.9823 -0.0011 9 6 3.8806 2.8229 -0.0002 10 6 2.9900 3.9990 0.0008 11 8 1.7835 3.8481 0.0021 12 7 3.5137 5.2410 0.0002 13 6 2.6294 6.4089 0.0006 14 1 1.5720 6.1979 0.1607 15 6 2.9859 7.5656 -0.9356 16 6 3.1832 7.7132 0.5729 17 6 4.6190 7.7040 1.1066 18 6 5.1460 9.1439 1.1297 19 7 4.1751 9.9924 1.8322 20 6 4.5575 10.7235 2.9251 21 1 5.3697 10.3790 3.5481 22 6 3.9014 11.9076 3.2322 23 7 3.9634 12.3970 4.4526 24 14 2.9303 12.8064 1.9137 25 1 1.5052 12.3946 1.9811 26 1 3.0332 14.2712 2.1351 27 1 3.4806 12.4681 0.5765 28 6 2.7895 10.0482 1.3492 29 6 2.2148 8.6266 1.3307 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 6.0820 -0.2851 -0.0017 36 1 7.1390 1.9344 -0.0023 37 1 5.7156 3.9666 -0.0008 38 1 4.4762 5.3613 -0.0012 39 1 3.8787 7.4577 -1.5515 40 1 2.1630 8.1159 -1.3919 41 1 4.6309 7.2944 2.1165 42 1 5.2469 7.0955 0.4557 43 1 5.2730 9.5028 0.1083 44 1 6.1027 9.1745 1.6511 45 1 3.5045 13.2242 4.6672 46 1 2.7704 10.4630 0.3413 47 1 2.1954 10.6739 2.0151 48 1 1.2473 8.6301 0.8287 49 1 2.0971 8.2667 2.3529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016956890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:20 Heat of formation + Delta-G solvation = -5.549663 kcal Electronic energy + Delta-G solvation = -30207.701350 eV Core-core repulsion = 26135.925397 eV Total energy + Delta-G solvation = -4071.775953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.99548 -40.88265 -39.59492 -39.04119 -37.28196 -34.79269 -33.92248 -33.07219 -33.00022 -32.02004 -31.04955 -30.17221 -26.07731 -25.92745 -25.08897 -24.52775 -23.29422 -23.20497 -22.61946 -21.60027 -19.94677 -19.63915 -18.84522 -18.26539 -18.03951 -17.39485 -17.28757 -16.82444 -16.06567 -15.94067 -15.91817 -15.78777 -15.43385 -15.17641 -14.92582 -14.81202 -14.60015 -14.37229 -14.22925 -13.99643 -13.79988 -13.56074 -13.43240 -13.35113 -13.31731 -12.93670 -12.59581 -12.48952 -12.43657 -12.24023 -12.11554 -11.76408 -11.61561 -11.47252 -11.33790 -11.21742 -11.06043 -10.82584 -10.71099 -10.56484 -9.77252 -9.50208 -8.84532 -8.15479 -5.46372 -0.37191 0.22641 1.31150 1.41723 1.51243 1.78366 1.93723 2.01305 2.43037 2.73721 2.95956 3.08166 3.22783 3.37956 3.64100 3.70470 3.76777 3.81616 3.92014 3.97437 4.03027 4.03615 4.11670 4.20019 4.38065 4.38685 4.45911 4.53056 4.61244 4.71555 4.79052 4.80330 4.85878 4.89355 4.89569 4.93826 4.95918 5.01755 5.07453 5.11932 5.16833 5.21977 5.31213 5.41724 5.49995 5.53358 5.90022 6.14939 6.21765 6.46480 6.73360 6.95829 7.18285 7.66163 8.06539 9.04521 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002337 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.892819 B =11977.550158 C =12724.252269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.301 6.301 4 C 0.349 3.651 5 N -0.562 5.562 6 C 0.164 3.836 7 C -0.205 4.205 8 C -0.004 4.004 9 C -0.236 4.236 10 C 0.563 3.437 11 O -0.563 6.563 12 N -0.682 5.682 13 C 0.083 3.917 14 H 0.117 0.883 15 C -0.161 4.161 16 C -0.118 4.118 17 C -0.086 4.086 18 C 0.147 3.853 19 N -0.619 5.619 20 C -0.246 4.246 21 H 0.052 0.948 22 C -0.038 4.038 23 N -0.959 5.959 24 Si 0.947 3.053 25 H -0.279 1.279 26 H -0.313 1.313 27 H -0.256 1.256 28 C 0.128 3.872 29 C -0.093 4.093 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.202 0.798 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.260 0.740 46 H 0.039 0.961 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -26.991 -15.137 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.206 6.206 4 C 0.170 3.830 5 N -0.286 5.286 6 C 0.007 3.993 7 C -0.225 4.225 8 C -0.030 4.030 9 C -0.243 4.243 10 C 0.351 3.649 11 O -0.442 6.442 12 N -0.333 5.333 13 C -0.023 4.023 14 H 0.135 0.865 15 C -0.200 4.200 16 C -0.120 4.120 17 C -0.125 4.125 18 C 0.022 3.978 19 N -0.344 5.344 20 C -0.375 4.375 21 H 0.069 0.931 22 C -0.233 4.233 23 N -0.605 5.605 24 Si 0.776 3.224 25 H -0.206 1.206 26 H -0.242 1.242 27 H -0.180 1.180 28 C 0.003 3.997 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.218 0.782 36 H 0.203 0.797 37 H 0.189 0.811 38 H 0.251 0.749 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.119 -27.641 -15.046 31.542 hybrid contribution 0.049 1.684 0.218 1.699 sum 2.168 -25.957 -14.828 29.972 Atomic orbital electron populations 1.21812 0.91878 1.04052 1.02751 1.22847 0.96003 0.80232 1.02541 1.86503 1.16707 1.31598 1.85836 1.20081 0.84707 0.89313 0.88901 1.67557 1.08054 1.31832 1.21192 1.23462 0.88352 0.99810 0.87647 1.22405 1.03618 0.91688 1.04791 1.22049 0.89598 1.02217 0.89103 1.20016 0.95539 0.91155 1.17548 1.18140 0.87590 0.83260 0.75869 1.90797 1.16273 1.86360 1.50777 1.45095 1.10292 1.03707 1.74202 1.21618 0.94909 0.80613 1.05157 0.86524 1.23683 1.04562 0.99716 0.92005 1.21794 0.97009 0.97076 0.96111 1.21476 0.92881 0.97669 1.00490 1.21081 0.91780 0.89543 0.95387 1.44427 1.05376 1.51915 1.32635 1.18882 1.16913 1.00742 1.00997 0.93074 1.25942 1.01174 0.98160 0.98003 1.69982 1.47946 1.22970 1.19630 0.85886 0.78596 0.76427 0.81491 1.20618 1.24231 1.18025 1.21305 0.85456 0.95953 0.97020 1.21532 0.97319 0.94885 0.99458 0.92621 0.87617 0.92338 0.91408 0.91115 0.78165 0.79738 0.81088 0.74940 0.86508 0.87540 0.92947 0.88855 0.94058 0.92341 0.93092 0.94293 0.93776 0.90440 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.06 1.17 6.03 71.98 0.43 1.60 16 3 O -0.30 -8.42 8.22 -66.48 -0.55 -8.97 16 4 C 0.35 8.60 7.51 85.13 0.64 9.24 16 5 N -0.56 -10.85 9.21 -307.99 -2.84 -13.69 16 6 C 0.16 1.80 11.17 84.71 0.95 2.75 16 7 C -0.21 -1.70 10.09 22.32 0.23 -1.48 16 8 C 0.00 -0.05 9.64 22.72 0.22 0.17 16 9 C -0.24 -5.26 5.90 -19.91 -0.12 -5.38 16 10 C 0.56 15.46 7.77 86.69 0.67 16.14 16 11 O -0.56 -20.37 14.76 16.82 0.25 -20.12 16 12 N -0.68 -15.06 5.30 -445.96 -2.36 -17.42 16 13 C 0.08 2.12 6.14 44.94 0.28 2.39 16 14 H 0.12 3.47 7.40 -2.39 -0.02 3.45 16 15 C -0.16 -3.58 9.86 30.55 0.30 -3.28 16 16 C -0.12 -3.28 1.94 -52.17 -0.10 -3.38 16 17 C -0.09 -2.35 5.37 30.77 0.17 -2.19 16 18 C 0.15 5.15 6.51 86.43 0.56 5.71 16 19 N -0.62 -28.33 2.71 -698.91 -1.89 -30.22 16 20 C -0.25 -13.83 10.00 84.03 0.84 -12.99 16 21 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 22 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 23 N -0.96 -60.80 13.97 21.65 0.30 -60.50 16 24 Si 0.95 46.76 24.40 68.60 1.67 48.43 16 25 H -0.28 -13.19 6.66 99.48 0.66 -12.53 16 26 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 27 H -0.26 -11.90 6.65 99.48 0.66 -11.24 16 28 C 0.13 5.33 4.23 86.43 0.37 5.70 16 29 C -0.09 -3.17 5.83 30.77 0.18 -2.99 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.17 1.09 6.52 -2.91 -0.02 1.07 16 38 H 0.41 6.35 5.22 -92.71 -0.48 5.87 16 39 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 1.71 6.75 -2.39 -0.02 1.69 16 43 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 44 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16 45 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 47 H 0.04 2.08 4.31 -2.39 -0.01 2.07 16 48 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 49 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -81.20 389.79 1.77 -79.42 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.39 Total: 14.57 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.79 Total: 8.49 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -6.79 Total: -121.82 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.30 Total: -29.09 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -81.20 1.77 -79.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016956890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.872 kcal (2) G-P(sol) polarization free energy of solvation -81.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds