Wall clock time and date at job start Wed Apr 1 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46902 * 2 1 4 4 C 1.35652 * 116.99900 * 180.02562 * 3 2 1 5 5 C 1.39347 * 120.53867 * 359.72205 * 4 3 2 6 6 C 1.38302 * 118.43578 * 179.73634 * 5 4 3 7 7 C 1.38760 * 119.44593 * 0.56024 * 6 5 4 8 8 N 1.31373 * 121.07040 * 359.70517 * 7 6 5 9 9 C 1.32860 * 121.69654 * 359.97438 * 8 7 6 10 10 C 1.47831 * 119.78885 * 180.02562 * 9 8 7 11 11 O 1.21546 * 120.00084 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99345 * 0.02562 * 10 9 8 13 13 C 1.46502 * 119.99459 * 180.02562 * 12 10 9 14 14 H 1.08998 * 115.55216 * 350.68173 * 13 12 10 15 15 C 1.53022 * 117.50216 * 136.41656 * 13 12 10 16 16 C 1.52816 * 117.49895 * 205.00275 * 13 12 10 17 17 C 1.53182 * 117.71401 * 144.89960 * 16 13 12 18 18 C 1.53353 * 108.77037 * 158.88683 * 17 16 13 19 19 N 1.46845 * 108.81570 * 51.30858 * 18 17 16 20 20 C 1.36929 * 120.38362 * 123.12610 * 19 18 17 21 21 H 1.08002 * 119.99880 * 208.88086 * 20 19 18 22 22 C 1.38810 * 120.00578 * 28.87460 * 20 19 18 23 23 N 1.31624 * 119.99673 * 17.86726 * 22 20 19 24 24 Si 1.86797 * 120.00348 * 197.86420 * 22 20 19 25 25 H 1.48495 * 109.47068 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46872 * 120.00321 * 24 22 20 27 27 H 1.48504 * 109.47242 * 239.99866 * 24 22 20 28 28 C 1.46852 * 119.22886 * 303.09702 * 19 18 17 29 29 C 1.53187 * 117.71585 * 0.13951 * 16 13 12 30 30 H 1.09002 * 109.47257 * 59.99784 * 1 2 3 31 31 H 1.08996 * 109.47030 * 300.00275 * 1 2 3 32 32 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47037 * 119.99689 * 2 1 3 34 34 H 1.08999 * 109.46724 * 240.00151 * 2 1 3 35 35 H 1.07993 * 120.77973 * 359.97438 * 5 4 3 36 36 H 1.08001 * 120.27308 * 180.26188 * 6 5 4 37 37 H 1.08002 * 119.46911 * 179.72260 * 7 6 5 38 38 H 0.96996 * 120.00519 * 0.02562 * 12 10 9 39 39 H 1.08999 * 117.50402 * 214.95095 * 15 13 12 40 40 H 1.09002 * 117.50526 * 0.02562 * 15 13 12 41 41 H 1.08997 * 109.58791 * 278.66823 * 17 16 13 42 42 H 1.08998 * 109.58778 * 39.09904 * 17 16 13 43 43 H 1.08999 * 109.57763 * 291.50387 * 18 17 16 44 44 H 1.08999 * 109.57878 * 171.10890 * 18 17 16 45 45 H 0.96999 * 120.00430 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.58053 * 297.10933 * 28 19 18 47 47 H 1.09002 * 109.57704 * 176.70427 * 28 19 18 48 48 H 1.09006 * 109.58302 * 320.90201 * 29 16 13 49 49 H 1.09000 * 109.59025 * 81.33234 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.2104 0.4280 0.0048 6 6 5.5739 0.6594 -0.0016 7 6 6.0442 1.9648 -0.0012 8 7 5.2154 2.9841 -0.0006 9 6 3.8980 2.8126 -0.0009 10 6 3.0040 3.9900 -0.0008 11 8 1.7982 3.8375 -0.0006 12 7 3.5263 5.2325 -0.0010 13 6 2.6404 6.3993 -0.0003 14 1 1.5832 6.1870 -0.1589 15 6 2.9968 7.5565 0.9354 16 6 3.1919 7.7043 -0.5733 17 6 2.2213 8.6164 -1.3299 18 6 2.7944 10.0387 -1.3494 19 7 4.1795 9.9847 -1.8342 20 6 4.5596 10.7162 -2.9275 21 1 5.3639 10.3669 -3.5579 22 6 3.9112 11.9068 -3.2257 23 7 3.1935 12.5140 -2.3043 24 14 4.0571 12.6474 -4.9344 25 1 4.9136 11.7771 -5.7795 26 1 2.7072 12.7550 -5.5441 27 1 4.6658 13.9985 -4.8380 28 6 5.1523 9.1375 -1.1325 29 6 4.6271 7.6969 -1.1089 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8207 -0.5792 0.0098 36 1 6.2667 -0.1691 -0.0020 37 1 7.1090 2.1460 -0.0016 38 1 4.4886 5.3542 -0.0015 39 1 2.1738 8.1058 1.3927 40 1 3.8905 7.4499 1.5502 41 1 2.1028 8.2563 -2.3518 42 1 1.2545 8.6188 -0.8266 43 1 2.7760 10.4537 -0.3416 44 1 2.1986 10.6635 -2.0147 45 1 2.7401 13.3457 -2.5127 46 1 5.2799 9.4966 -0.1113 47 1 6.1083 9.1692 -1.6552 48 1 5.2565 7.0891 -0.4588 49 1 4.6381 7.2873 -2.1190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017008805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:01 Heat of formation + Delta-G solvation = -8.314716 kcal Electronic energy + Delta-G solvation = -30108.830962 eV Core-core repulsion = 26036.935107 eV Total energy + Delta-G solvation = -4071.895855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99457 -40.80125 -39.52649 -39.24021 -37.11189 -34.56602 -33.61144 -33.07135 -32.92985 -31.65485 -30.96673 -29.91423 -26.30071 -26.08723 -25.15802 -24.06245 -23.31045 -23.10158 -22.47638 -21.50238 -19.84750 -19.51496 -18.88358 -18.30564 -17.92717 -17.27702 -17.04816 -16.76743 -16.33961 -16.03512 -15.67213 -15.50206 -15.33240 -15.09258 -14.89543 -14.75952 -14.63585 -14.33144 -14.13820 -13.78374 -13.59195 -13.50485 -13.30341 -13.24809 -13.10414 -12.88935 -12.60397 -12.52817 -12.29919 -12.24420 -11.99489 -11.85431 -11.79062 -11.38744 -11.35316 -11.23198 -10.84003 -10.81549 -10.58843 -10.47311 -9.74655 -9.44573 -8.61720 -7.85347 -5.31470 -0.38105 0.21919 1.45591 1.47902 1.58343 1.68868 1.97529 2.09556 2.52055 2.75695 2.99172 3.16128 3.29344 3.56260 3.64144 3.72114 3.79725 3.87349 3.98450 3.99344 4.01570 4.11799 4.13261 4.15524 4.32464 4.45256 4.52512 4.60973 4.72871 4.76740 4.84162 4.86927 4.89682 4.90703 4.96135 5.00286 5.02440 5.08069 5.17354 5.21207 5.31080 5.37367 5.44284 5.49940 5.55908 5.66580 5.77694 6.23146 6.42147 6.42981 6.80279 7.17064 7.18200 7.89179 8.40800 9.19987 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002252 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.517728 B =12432.305992 C =13008.155239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 O -0.307 6.307 4 C 0.126 3.874 5 C -0.173 4.173 6 C -0.085 4.085 7 C 0.053 3.947 8 N -0.441 5.441 9 C 0.002 3.998 10 C 0.567 3.433 11 O -0.557 6.557 12 N -0.674 5.674 13 C 0.081 3.919 14 H 0.121 0.879 15 C -0.166 4.166 16 C -0.113 4.113 17 C -0.093 4.093 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.064 0.936 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.147 3.853 29 C -0.082 4.082 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.190 0.810 37 H 0.197 0.803 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.250 0.750 46 H 0.019 0.981 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -31.751 7.736 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.218 6.218 4 C 0.075 3.925 5 C -0.199 4.199 6 C -0.104 4.104 7 C -0.109 4.109 8 N -0.153 5.153 9 C -0.134 4.134 10 C 0.354 3.646 11 O -0.435 6.435 12 N -0.324 5.324 13 C -0.025 4.025 14 H 0.139 0.861 15 C -0.205 4.205 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.056 3.944 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.082 0.918 22 C -0.247 4.247 23 N -0.579 5.579 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.021 3.979 29 C -0.121 4.121 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.196 0.804 36 H 0.207 0.793 37 H 0.214 0.786 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.570 -30.711 7.721 31.770 hybrid contribution -0.113 0.227 -0.818 0.856 sum 2.457 -30.484 6.903 31.352 Atomic orbital electron populations 1.21791 0.92251 1.04095 1.02625 1.23267 0.96846 0.80501 1.03107 1.86401 1.17576 1.31462 1.86342 1.20237 0.84684 0.94197 0.93386 1.22177 0.94340 0.98996 1.04356 1.22748 0.95375 0.99557 0.92769 1.23416 1.01003 0.88080 0.98437 1.67546 1.01247 1.37474 1.09004 1.20361 0.90882 0.90808 1.11366 1.18082 0.87167 0.83148 0.76208 1.90777 1.15392 1.86145 1.51179 1.45152 1.10667 1.03767 1.72809 1.21684 0.94884 0.80713 1.05214 0.86139 1.23606 1.04158 1.00177 0.92521 1.21812 0.97104 0.96725 0.95777 1.21637 0.96754 0.96148 0.98708 1.20530 0.85414 0.92527 0.95966 1.44246 1.05504 1.51053 1.32340 1.19529 1.17742 1.00088 1.01742 0.91808 1.25788 1.01384 0.96354 1.01142 1.70190 1.37179 1.17579 1.32971 0.85254 0.77181 0.77803 0.80495 1.19194 1.21774 1.21776 1.20987 0.92226 0.89851 0.94808 1.21425 0.92944 0.97633 1.00077 0.92891 0.92686 0.87337 0.89750 0.89968 0.80437 0.79316 0.78619 0.74669 0.87686 0.87470 0.93440 0.91366 0.98052 0.92672 0.94119 0.96289 0.92636 0.90277 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.49 5.48 71.98 0.39 0.89 16 3 O -0.31 -7.52 8.20 -68.68 -0.56 -8.08 16 4 C 0.13 2.80 6.71 22.94 0.15 2.95 16 5 C -0.17 -2.07 9.13 22.55 0.21 -1.87 16 6 C -0.09 -0.70 10.10 22.41 0.23 -0.48 16 7 C 0.05 0.69 11.17 84.89 0.95 1.64 16 8 N -0.44 -9.68 9.54 -184.63 -1.76 -11.44 16 9 C 0.00 0.05 6.76 41.93 0.28 0.34 16 10 C 0.57 18.57 7.80 86.78 0.68 19.25 16 11 O -0.56 -21.66 14.70 17.13 0.25 -21.41 16 12 N -0.67 -20.31 5.33 -445.68 -2.38 -22.69 16 13 C 0.08 2.60 6.14 44.94 0.28 2.88 16 14 H 0.12 4.19 7.40 -2.39 -0.02 4.18 16 15 C -0.17 -5.01 9.86 30.55 0.30 -4.71 16 16 C -0.11 -3.93 1.94 -52.17 -0.10 -4.03 16 17 C -0.09 -3.77 5.83 30.77 0.18 -3.59 16 18 C 0.18 9.08 5.40 86.43 0.47 9.54 16 19 N -0.61 -31.46 2.94 -698.88 -2.05 -33.51 16 20 C -0.26 -14.72 9.54 84.03 0.80 -13.91 16 21 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 22 C -0.05 -2.94 4.88 84.86 0.41 -2.52 16 23 N -0.93 -56.36 11.23 21.65 0.24 -56.11 16 24 Si 0.96 45.95 29.59 68.60 2.03 47.98 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.15 6.21 6.52 86.43 0.56 6.77 16 29 C -0.08 -2.84 5.37 30.77 0.17 -2.68 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.71 7.69 -2.39 -0.02 0.69 16 34 H 0.08 0.73 7.71 -2.39 -0.02 0.72 16 35 H 0.18 0.86 6.46 -2.91 -0.02 0.84 16 36 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.42 11.29 6.44 -92.71 -0.60 10.69 16 39 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.05 3.13 5.93 -2.39 -0.01 3.11 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 2.29 7.92 -2.39 -0.02 2.27 16 48 H 0.08 2.26 6.75 -2.38 -0.02 2.24 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.93 395.77 2.83 -75.10 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.37 Total: 20.91 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.70 Total: 9.25 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.95 Total: -123.76 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.31 Total: -29.49 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.93 2.83 -75.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017008805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.783 kcal (2) G-P(sol) polarization free energy of solvation -77.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds