Wall clock time and date at job start Wed Apr 1 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47081 * 2 1 4 4 C 1.35497 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.39166 * 119.52595 * 180.02562 * 4 3 2 6 6 C 1.37962 * 119.26216 * 179.71915 * 5 4 3 7 7 C 1.40277 * 118.35800 * 0.52222 * 6 5 4 8 8 C 1.47611 * 120.49890 * 179.75292 * 7 6 5 9 9 O 1.21580 * 120.00265 * 359.44863 * 8 7 6 10 10 N 1.34777 * 120.00150 * 179.72593 * 8 7 6 11 11 C 1.46495 * 120.00521 * 179.72797 * 10 8 7 12 12 C 1.53146 * 109.43354 * 275.22369 * 11 10 8 13 13 C 1.53704 * 108.88178 * 186.03998 * 12 11 10 14 14 H 1.09000 * 112.58239 * 187.92633 * 13 12 11 15 15 C 1.54607 * 107.83174 * 312.22517 * 13 12 11 16 16 C 1.54307 * 104.74980 * 88.65992 * 15 13 12 17 17 C 1.54608 * 104.75440 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.19437 * 147.40972 * 17 16 15 19 19 C 1.53149 * 109.44139 * 154.99669 * 11 10 8 20 20 N 1.48291 * 107.27423 * 64.00454 * 13 12 11 21 21 C 1.36940 * 128.21497 * 107.44371 * 20 13 12 22 22 H 1.07998 * 120.00067 * 164.70311 * 21 20 13 23 23 C 1.38818 * 119.99270 * 344.70133 * 21 20 13 24 24 N 1.31610 * 120.00200 * 350.28422 * 23 21 20 25 25 Si 1.86807 * 119.99428 * 170.28569 * 23 21 20 26 26 H 1.48499 * 109.47070 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47065 * 120.00157 * 25 23 21 28 28 H 1.48502 * 109.46601 * 240.00124 * 25 23 21 29 29 C 1.39526 * 119.00049 * 359.48167 * 7 6 5 30 30 N 1.31659 * 120.62839 * 0.25185 * 29 7 6 31 31 H 1.09002 * 109.46886 * 300.00020 * 1 2 3 32 32 H 1.09001 * 109.47013 * 60.00168 * 1 2 3 33 33 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46897 * 239.99624 * 2 1 3 35 35 H 1.09001 * 109.47013 * 119.99832 * 2 1 3 36 36 H 1.08004 * 120.37104 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.81921 * 180.30017 * 6 5 4 38 38 H 0.97006 * 119.99973 * 359.72178 * 10 8 7 39 39 H 1.09006 * 109.43536 * 35.08091 * 11 10 8 40 40 H 1.09010 * 109.56554 * 305.85524 * 12 11 10 41 41 H 1.08997 * 109.57654 * 66.21795 * 12 11 10 42 42 H 1.09006 * 110.38197 * 329.84735 * 15 13 12 43 43 H 1.08993 * 110.38391 * 207.48383 * 15 13 12 44 44 H 1.09000 * 110.38421 * 241.18147 * 16 15 13 45 45 H 1.09006 * 110.47259 * 118.86969 * 16 15 13 46 46 H 1.08999 * 109.56844 * 293.77866 * 19 11 10 47 47 H 1.09002 * 109.56618 * 54.13922 * 19 11 10 48 48 H 0.97008 * 119.99896 * 179.97438 * 24 23 21 49 49 H 1.07999 * 119.68501 * 180.27330 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9896 0.0076 7 6 6.0565 1.8494 0.0021 8 6 7.5267 1.9813 0.0031 9 8 8.0382 3.0843 -0.0014 10 7 8.3022 0.8790 0.0034 11 6 9.7613 1.0098 -0.0016 12 6 10.2525 1.1826 -1.4419 13 6 11.7894 1.1663 -1.4486 14 1 12.2065 1.4221 -2.4226 15 6 12.2779 2.1212 -0.3352 16 6 12.3612 1.2405 0.9291 17 6 11.9158 -0.1640 0.4607 18 1 12.4248 -0.9599 1.0043 19 6 10.3878 -0.2468 0.6099 20 7 12.2175 -0.1777 -0.9910 21 6 12.7630 -1.1912 -1.7329 22 1 13.2526 -2.0181 -1.2400 23 6 12.6867 -1.1557 -3.1185 24 7 11.9309 -0.2571 -3.7131 25 14 13.6567 -2.3833 -4.1391 26 1 14.4227 -3.2808 -3.2375 27 1 12.7215 -3.1900 -4.9636 28 1 14.5974 -1.6546 -5.0275 29 6 5.4586 0.5887 0.0014 30 7 4.1476 0.4682 0.0009 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2115 3.6705 0.0007 37 1 5.6710 3.9796 0.0130 38 1 7.8942 -0.0011 0.0070 39 1 10.0494 1.8815 0.5861 40 1 9.8760 0.3649 -2.0566 41 1 9.8958 2.1335 -1.8377 42 1 11.5623 2.9301 -0.1878 43 1 13.2603 2.5229 -0.5835 44 1 11.6866 1.6161 1.6986 45 1 13.3840 1.2084 1.3048 46 1 10.1269 -0.3076 1.6665 47 1 10.0176 -1.1298 0.0891 48 1 11.8779 -0.2320 -4.6814 49 1 6.0772 -0.2966 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021273070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:20 Heat of formation + Delta-G solvation = -9.469770 kcal Electronic energy + Delta-G solvation = -30451.876090 eV Core-core repulsion = 26379.930149 eV Total energy + Delta-G solvation = -4071.945942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.04078 -39.92958 -38.83252 -37.78698 -34.57432 -32.78435 -32.68903 -32.38782 -30.84896 -30.25383 -29.18151 -29.13126 -25.01279 -24.52342 -24.19026 -23.32096 -22.61824 -21.64969 -20.43685 -19.32689 -18.92639 -18.69804 -17.68723 -17.24384 -16.63387 -16.58322 -15.90200 -15.14220 -14.79615 -14.75631 -14.39277 -14.29118 -14.11623 -13.92250 -13.66795 -13.12621 -13.02100 -12.94993 -12.81330 -12.68362 -12.62108 -12.08332 -11.94359 -11.91562 -11.49365 -11.37854 -11.08446 -11.03740 -10.83160 -10.67137 -10.63256 -10.20870 -10.18159 -10.08874 -9.78666 -9.66319 -9.58761 -9.41028 -9.32639 -8.84649 -8.71452 -8.38928 -6.83254 -5.77177 -3.12124 0.56162 0.95586 2.66161 2.91521 3.36077 3.39525 3.44286 3.45975 3.73483 3.91339 4.46012 4.57879 4.64295 4.65505 4.68358 4.81890 4.92388 5.05108 5.24232 5.30032 5.34942 5.39222 5.46290 5.49844 5.56538 5.68535 5.74013 5.79142 5.87657 5.93715 5.96556 6.01097 6.08640 6.20174 6.30283 6.42247 6.52867 6.67200 6.67990 6.74571 6.86504 6.89486 6.96454 7.05057 7.18735 7.47031 7.57172 7.58995 7.77300 7.79796 8.23598 8.42916 9.13018 9.75414 10.54353 11.35029 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002462 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.263794 B =11369.839790 C =12399.311298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.339 3.661 5 C -0.198 4.198 6 C 0.015 3.985 7 C -0.219 4.219 8 C 0.563 3.437 9 O -0.540 6.540 10 N -0.716 5.716 11 C 0.147 3.853 12 C -0.121 4.121 13 C 0.183 3.817 14 H 0.109 0.891 15 C -0.145 4.145 16 C -0.132 4.132 17 C 0.151 3.849 18 H 0.070 0.930 19 C -0.136 4.136 20 N -0.584 5.584 21 C -0.224 4.224 22 H 0.075 0.925 23 C -0.005 4.005 24 N -0.909 5.909 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.177 3.823 30 N -0.544 5.544 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.392 0.608 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.252 0.748 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.884 2.672 9.623 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.160 3.840 5 C -0.218 4.218 6 C -0.010 4.010 7 C -0.225 4.225 8 C 0.349 3.651 9 O -0.418 6.418 10 N -0.365 5.365 11 C 0.044 3.956 12 C -0.161 4.161 13 C 0.075 3.925 14 H 0.127 0.873 15 C -0.184 4.184 16 C -0.171 4.171 17 C 0.043 3.957 18 H 0.088 0.912 19 C -0.176 4.176 20 N -0.304 5.304 21 C -0.352 4.352 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.555 5.555 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.020 3.980 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.173 0.827 38 H 0.227 0.773 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.060 2.695 9.361 20.519 hybrid contribution 0.488 -0.576 -0.650 0.996 sum -17.572 2.119 8.710 19.727 Atomic orbital electron populations 1.21831 0.92913 1.03013 1.03321 1.22668 0.94808 0.80786 1.02856 1.86202 1.16820 1.31074 1.87051 1.20034 0.84036 0.90055 0.89867 1.21046 0.95600 0.95795 1.09399 1.21548 0.91423 0.99625 0.88436 1.20969 0.95246 0.95039 1.11204 1.17837 0.85488 0.84961 0.76797 1.90768 1.74901 1.25742 1.50422 1.46290 1.08301 1.07979 1.73976 1.21389 0.76230 0.98903 0.99074 1.22399 0.99219 1.00934 0.93539 1.21470 0.90528 0.83586 0.96895 0.87301 1.22815 1.00319 0.98232 0.97064 1.22651 1.00039 0.97131 0.97260 1.21501 0.91141 0.95066 0.88031 0.91190 1.22529 0.99551 0.97176 0.98383 1.45205 1.71508 1.11669 1.02044 1.19015 1.27970 1.00169 0.88030 0.90719 1.24837 0.99559 0.99085 0.96698 1.69896 1.40399 1.36759 1.08458 0.86119 0.79349 0.80389 0.80299 1.20525 1.21909 1.21764 1.22650 0.89177 0.96460 0.89732 1.67321 1.06315 1.32847 1.20234 0.91648 0.91599 0.90185 0.91315 0.91380 0.83468 0.82742 0.77330 0.89764 0.90698 0.93799 0.92403 0.92910 0.92670 0.92735 0.93291 0.91580 0.93768 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.53 6.02 37.16 0.22 0.75 16 3 O -0.30 -3.21 10.10 -18.18 -0.18 -3.39 16 4 C 0.34 3.90 7.49 -16.96 -0.13 3.77 16 5 C -0.20 -2.05 10.02 -39.34 -0.39 -2.45 16 6 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 7 C -0.22 -2.82 5.89 -104.83 -0.62 -3.44 16 8 C 0.56 8.87 7.73 -12.44 -0.10 8.78 16 9 O -0.54 -10.28 16.08 5.30 0.09 -10.19 16 10 N -0.72 -10.85 5.03 -54.68 -0.28 -11.12 16 11 C 0.15 2.61 2.10 -67.78 -0.14 2.46 16 12 C -0.12 -2.58 5.10 -26.29 -0.13 -2.71 16 13 C 0.18 4.18 3.13 -65.73 -0.21 3.97 16 14 H 0.11 2.88 6.37 -51.93 -0.33 2.55 16 15 C -0.15 -2.82 5.98 -25.20 -0.15 -2.97 16 16 C -0.13 -2.32 5.98 -25.20 -0.15 -2.47 16 17 C 0.15 2.94 4.32 -65.72 -0.28 2.65 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.14 -2.34 5.09 -26.27 -0.13 -2.47 16 20 N -0.58 -13.86 2.82 -152.74 -0.43 -14.29 16 21 C -0.22 -5.89 10.37 -15.06 -0.16 -6.04 16 22 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 23 C 0.00 -0.12 5.42 -17.43 -0.09 -0.22 16 24 N -0.91 -25.36 10.61 55.49 0.59 -24.77 16 25 Si 0.91 21.41 29.57 -169.99 -5.03 16.38 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.18 2.05 10.71 -17.15 -0.18 1.87 16 30 N -0.54 -6.50 9.18 -12.97 -0.12 -6.62 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.15 1.67 7.73 -52.49 -0.41 1.26 16 38 H 0.39 4.92 6.65 -40.82 -0.27 4.65 16 39 H 0.08 1.57 4.96 -51.93 -0.26 1.32 16 40 H 0.07 1.82 7.99 -51.92 -0.41 1.40 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.08 7.04 -51.93 -0.37 0.72 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.87 7.04 -51.93 -0.37 0.51 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.16 1.52 6.41 -52.49 -0.34 1.18 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -30.90 387.93 -9.52 -40.42 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.36 Total: 6.96 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.64 Total: 0.77 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.24 Total: -56.80 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.10 Total: -13.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.90 -9.52 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021273070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.950 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds