Wall clock time and date at job start Wed Apr 1 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47081 * 2 1 4 4 C 1.35497 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.39166 * 119.52595 * 180.02562 * 4 3 2 6 6 C 1.37962 * 119.26216 * 179.71915 * 5 4 3 7 7 C 1.40277 * 118.35800 * 0.52222 * 6 5 4 8 8 C 1.47611 * 120.49890 * 179.75292 * 7 6 5 9 9 O 1.21580 * 120.00265 * 359.44863 * 8 7 6 10 10 N 1.34777 * 120.00150 * 179.72593 * 8 7 6 11 11 C 1.46495 * 120.00521 * 179.72797 * 10 8 7 12 12 C 1.53146 * 109.43354 * 275.22369 * 11 10 8 13 13 C 1.53704 * 108.88178 * 186.03998 * 12 11 10 14 14 H 1.09000 * 112.58239 * 187.92633 * 13 12 11 15 15 C 1.54607 * 107.83174 * 312.22517 * 13 12 11 16 16 C 1.54307 * 104.74980 * 88.65992 * 15 13 12 17 17 C 1.54608 * 104.75440 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.19437 * 147.40972 * 17 16 15 19 19 C 1.53149 * 109.44139 * 154.99669 * 11 10 8 20 20 N 1.48291 * 107.27423 * 64.00454 * 13 12 11 21 21 C 1.36940 * 128.21497 * 107.44371 * 20 13 12 22 22 H 1.07998 * 120.00067 * 164.70311 * 21 20 13 23 23 C 1.38818 * 119.99270 * 344.70133 * 21 20 13 24 24 N 1.31610 * 120.00200 * 350.28422 * 23 21 20 25 25 Si 1.86807 * 119.99428 * 170.28569 * 23 21 20 26 26 H 1.48499 * 109.47070 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47065 * 120.00157 * 25 23 21 28 28 H 1.48502 * 109.46601 * 240.00124 * 25 23 21 29 29 C 1.39526 * 119.00049 * 359.48167 * 7 6 5 30 30 N 1.31659 * 120.62839 * 0.25185 * 29 7 6 31 31 H 1.09002 * 109.46886 * 300.00020 * 1 2 3 32 32 H 1.09001 * 109.47013 * 60.00168 * 1 2 3 33 33 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46897 * 239.99624 * 2 1 3 35 35 H 1.09001 * 109.47013 * 119.99832 * 2 1 3 36 36 H 1.08004 * 120.37104 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.81921 * 180.30017 * 6 5 4 38 38 H 0.97006 * 119.99973 * 359.72178 * 10 8 7 39 39 H 1.09006 * 109.43536 * 35.08091 * 11 10 8 40 40 H 1.09010 * 109.56554 * 305.85524 * 12 11 10 41 41 H 1.08997 * 109.57654 * 66.21795 * 12 11 10 42 42 H 1.09006 * 110.38197 * 329.84735 * 15 13 12 43 43 H 1.08993 * 110.38391 * 207.48383 * 15 13 12 44 44 H 1.09000 * 110.38421 * 241.18147 * 16 15 13 45 45 H 1.09006 * 110.47259 * 118.86969 * 16 15 13 46 46 H 1.08999 * 109.56844 * 293.77866 * 19 11 10 47 47 H 1.09002 * 109.56618 * 54.13922 * 19 11 10 48 48 H 0.97008 * 119.99896 * 179.97438 * 24 23 21 49 49 H 1.07999 * 119.68501 * 180.27330 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9896 0.0076 7 6 6.0565 1.8494 0.0021 8 6 7.5267 1.9813 0.0031 9 8 8.0382 3.0843 -0.0014 10 7 8.3022 0.8790 0.0034 11 6 9.7613 1.0098 -0.0016 12 6 10.2525 1.1826 -1.4419 13 6 11.7894 1.1663 -1.4486 14 1 12.2065 1.4221 -2.4226 15 6 12.2779 2.1212 -0.3352 16 6 12.3612 1.2405 0.9291 17 6 11.9158 -0.1640 0.4607 18 1 12.4248 -0.9599 1.0043 19 6 10.3878 -0.2468 0.6099 20 7 12.2175 -0.1777 -0.9910 21 6 12.7630 -1.1912 -1.7329 22 1 13.2526 -2.0181 -1.2400 23 6 12.6867 -1.1557 -3.1185 24 7 11.9309 -0.2571 -3.7131 25 14 13.6567 -2.3833 -4.1391 26 1 14.4227 -3.2808 -3.2375 27 1 12.7215 -3.1900 -4.9636 28 1 14.5974 -1.6546 -5.0275 29 6 5.4586 0.5887 0.0014 30 7 4.1476 0.4682 0.0009 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.2115 3.6705 0.0007 37 1 5.6710 3.9796 0.0130 38 1 7.8942 -0.0011 0.0070 39 1 10.0494 1.8815 0.5861 40 1 9.8760 0.3649 -2.0566 41 1 9.8958 2.1335 -1.8377 42 1 11.5623 2.9301 -0.1878 43 1 13.2603 2.5229 -0.5835 44 1 11.6866 1.6161 1.6986 45 1 13.3840 1.2084 1.3048 46 1 10.1269 -0.3076 1.6665 47 1 10.0176 -1.1298 0.0891 48 1 11.8779 -0.2320 -4.6814 49 1 6.0772 -0.2966 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021273070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:19 Heat of formation + Delta-G solvation = -29.396940 kcal Electronic energy + Delta-G solvation = -30452.740197 eV Core-core repulsion = 26379.930149 eV Total energy + Delta-G solvation = -4072.810048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00880 -41.29538 -40.09540 -38.78396 -36.01018 -34.54324 -33.65620 -33.19559 -31.96997 -31.82632 -30.98756 -30.34743 -26.63555 -25.43880 -25.32629 -24.88721 -23.53869 -22.93930 -21.73251 -20.92419 -20.39525 -19.69911 -19.07356 -18.32403 -18.10534 -17.38488 -17.22818 -16.68180 -16.12246 -16.05626 -15.78918 -15.45499 -15.08081 -14.86798 -14.77355 -14.63528 -14.46895 -14.19792 -13.85252 -13.78005 -13.65341 -13.33830 -13.29537 -13.11920 -13.10799 -12.84692 -12.57397 -12.51293 -12.42170 -12.26091 -11.90521 -11.75202 -11.40311 -11.33632 -11.28009 -11.11423 -11.09259 -10.94371 -10.73956 -10.58556 -9.99122 -9.62173 -8.74298 -7.79866 -5.14535 -0.39231 0.08738 1.47702 1.49923 1.58681 1.79674 1.89497 2.16803 2.53159 2.73664 3.07383 3.38356 3.57084 3.65353 3.76479 3.91707 3.95304 4.01896 4.08075 4.13475 4.19416 4.30010 4.37864 4.43836 4.45152 4.50286 4.53063 4.60617 4.65482 4.78533 4.85489 4.89681 4.95048 4.99802 5.03657 5.14938 5.17285 5.19139 5.20807 5.27332 5.31058 5.35098 5.58322 5.59612 5.64987 5.79715 5.88422 6.08617 6.30447 6.54107 6.59945 7.12455 7.20423 7.80341 8.60890 9.31214 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002462 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.263794 B =11369.839790 C =12399.311298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.332 3.668 5 C -0.191 4.191 6 C 0.013 3.987 7 C -0.234 4.234 8 C 0.565 3.435 9 O -0.577 6.577 10 N -0.709 5.709 11 C 0.160 3.840 12 C -0.105 4.105 13 C 0.176 3.824 14 H 0.063 0.937 15 C -0.137 4.137 16 C -0.121 4.121 17 C 0.142 3.858 18 H 0.081 0.919 19 C -0.125 4.125 20 N -0.603 5.603 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.060 4.060 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.267 1.267 27 H -0.297 1.297 28 H -0.299 1.299 29 C 0.182 3.818 30 N -0.553 5.553 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.406 0.594 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.243 0.757 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.221 2.051 11.897 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.215 6.215 4 C 0.154 3.846 5 C -0.212 4.212 6 C -0.012 4.012 7 C -0.240 4.240 8 C 0.353 3.647 9 O -0.458 6.458 10 N -0.360 5.360 11 C 0.056 3.944 12 C -0.145 4.145 13 C 0.068 3.932 14 H 0.081 0.919 15 C -0.176 4.176 16 C -0.159 4.159 17 C 0.035 3.965 18 H 0.099 0.901 19 C -0.165 4.165 20 N -0.325 5.325 21 C -0.355 4.355 22 H 0.097 0.903 23 C -0.254 4.254 24 N -0.584 5.584 25 Si 0.797 3.203 26 H -0.191 1.191 27 H -0.225 1.225 28 H -0.226 1.226 29 C 0.025 3.975 30 N -0.277 5.277 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.190 0.810 37 H 0.177 0.823 38 H 0.243 0.757 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.424 2.045 11.679 22.756 hybrid contribution 0.823 -0.373 -1.350 1.624 sum -18.601 1.672 10.329 21.342 Atomic orbital electron populations 1.21842 0.90906 1.04293 1.03468 1.22877 0.96384 0.79788 1.02604 1.86215 1.16225 1.32407 1.86684 1.20331 0.84507 0.90436 0.89339 1.21262 0.95335 0.96326 1.08249 1.21676 0.91898 0.99527 0.88102 1.20777 0.93466 0.96259 1.13492 1.18201 0.86609 0.84281 0.75602 1.90745 1.75801 1.27049 1.52164 1.46084 1.07247 1.08854 1.73768 1.21057 0.77769 0.99386 0.96172 1.22140 0.98362 0.98391 0.95648 1.21328 0.91277 0.84516 0.96074 0.91884 1.22695 1.00157 0.97938 0.96840 1.22591 1.01488 0.95262 0.96595 1.21787 0.92696 0.96562 0.85447 0.90091 1.22387 0.97686 0.95988 1.00449 1.45368 1.71779 1.11376 1.03976 1.19330 1.27173 1.00469 0.88500 0.90313 1.25529 1.01003 1.00993 0.97887 1.70099 1.42061 1.38473 1.07780 0.85181 0.77866 0.78528 0.78745 1.19103 1.22468 1.22625 1.22884 0.89297 0.96580 0.88767 1.67373 1.06346 1.33236 1.20748 0.91336 0.91576 0.88348 0.91795 0.91393 0.80984 0.82306 0.75674 0.89795 0.94283 0.95558 0.91670 0.93144 0.89935 0.91568 0.89393 0.92743 0.94788 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.06 0.88 6.02 71.98 0.43 1.31 16 3 O -0.31 -5.98 10.10 -87.98 -0.89 -6.87 16 4 C 0.33 7.11 7.49 84.83 0.64 7.74 16 5 C -0.19 -3.62 10.02 22.43 0.22 -3.40 16 6 C 0.01 0.30 9.70 22.70 0.22 0.52 16 7 C -0.23 -5.80 5.89 -20.00 -0.12 -5.92 16 8 C 0.57 17.41 7.73 86.72 0.67 18.08 16 9 O -0.58 -21.83 16.08 -3.97 -0.06 -21.89 16 10 N -0.71 -20.71 5.03 -445.16 -2.24 -22.95 16 11 C 0.16 5.51 2.10 45.09 0.09 5.61 16 12 C -0.10 -4.61 5.10 30.88 0.16 -4.46 16 13 C 0.18 8.26 3.13 45.43 0.14 8.40 16 14 H 0.06 3.54 6.37 -2.39 -0.02 3.52 16 15 C -0.14 -5.26 5.98 31.58 0.19 -5.07 16 16 C -0.12 -3.92 5.98 31.59 0.19 -3.74 16 17 C 0.14 5.23 4.32 45.45 0.20 5.43 16 18 H 0.08 2.80 8.14 -2.39 -0.02 2.79 16 19 C -0.13 -4.00 5.09 30.90 0.16 -3.85 16 20 N -0.60 -28.76 2.82 -637.17 -1.80 -30.55 16 21 C -0.23 -11.97 10.37 84.03 0.87 -11.10 16 22 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 23 C -0.06 -3.31 5.42 84.86 0.46 -2.85 16 24 N -0.94 -54.61 10.61 21.65 0.23 -54.38 16 25 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 C 0.18 3.95 10.71 85.03 0.91 4.86 16 30 N -0.55 -12.39 9.18 -307.83 -2.82 -15.22 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.16 3.29 7.73 -2.91 -0.02 3.27 16 38 H 0.41 9.56 6.65 -92.70 -0.62 8.95 16 39 H 0.08 2.97 4.96 -2.38 -0.01 2.96 16 40 H 0.04 1.97 7.99 -2.38 -0.02 1.95 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 2.39 7.04 -2.38 -0.02 2.37 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 2.28 7.04 -2.39 -0.02 2.26 16 45 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.24 14.01 8.31 -92.70 -0.77 13.24 16 49 H 0.18 3.05 6.41 -2.91 -0.02 3.03 16 Total: -1.00 -69.01 387.93 0.97 -68.04 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.35 Total: 25.93 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.17 Total: 10.89 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.63 Total: -123.10 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.95 Total: -28.76 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.01 0.97 -68.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021273070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.642 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds