Wall clock time and date at job start Wed Apr 1 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47412 * 2 1 4 4 C 1.35644 * 117.00196 * 179.97438 * 3 2 1 5 5 C 1.39344 * 120.54269 * 0.25472 * 4 3 2 6 6 C 1.38299 * 118.43900 * 180.19633 * 5 4 3 7 7 C 1.38762 * 119.44561 * 359.53108 * 6 5 4 8 8 N 1.31376 * 121.06959 * 0.25279 * 7 6 5 9 9 C 1.32855 * 121.69571 * 0.02562 * 8 7 6 10 10 C 1.47831 * 119.78416 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99784 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99940 * 359.97438 * 10 9 8 13 13 C 1.46498 * 119.99795 * 180.02562 * 12 10 9 14 14 C 1.53146 * 109.43958 * 119.96265 * 13 12 10 15 15 C 1.53699 * 108.87712 * 66.17063 * 14 13 12 16 16 H 1.08995 * 112.10075 * 188.25941 * 15 14 13 17 17 C 1.54611 * 107.83203 * 312.23209 * 15 14 13 18 18 C 1.54311 * 104.75049 * 88.67091 * 17 15 14 19 19 C 1.54607 * 104.75068 * 359.97438 * 18 17 15 20 20 H 1.08998 * 112.18853 * 146.80303 * 19 18 17 21 21 C 1.53157 * 109.43018 * 240.14069 * 13 12 10 22 22 N 1.48293 * 104.26189 * 25.14326 * 19 18 17 23 23 C 1.36935 * 128.21360 * 138.42422 * 22 19 18 24 24 H 1.07993 * 119.99972 * 195.29937 * 23 22 19 25 25 C 1.38813 * 119.99699 * 15.29733 * 23 22 19 26 26 N 1.31621 * 120.00227 * 9.24205 * 25 23 22 27 27 Si 1.86799 * 119.99950 * 189.24643 * 25 23 22 28 28 H 1.48497 * 109.47144 * 59.99858 * 27 25 23 29 29 H 1.48500 * 109.47205 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47003 * 299.99904 * 27 25 23 31 31 H 1.09005 * 109.46839 * 59.99924 * 1 2 3 32 32 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46903 * 300.00443 * 1 2 3 34 34 H 1.09000 * 109.47551 * 239.99943 * 2 1 3 35 35 H 1.09000 * 109.47296 * 120.00156 * 2 1 3 36 36 H 1.07994 * 120.77738 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.27562 * 179.80466 * 6 5 4 38 38 H 1.08006 * 119.46693 * 180.23356 * 7 6 5 39 39 H 0.96997 * 119.99903 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.43902 * 0.04323 * 13 12 10 41 41 H 1.08994 * 109.56924 * 185.98956 * 14 13 12 42 42 H 1.09003 * 109.56398 * 306.35107 * 14 13 12 43 43 H 1.09000 * 110.38025 * 207.48506 * 17 15 14 44 44 H 1.08997 * 110.38455 * 329.73436 * 17 15 14 45 45 H 1.08998 * 110.38167 * 118.81636 * 18 17 15 46 46 H 1.09001 * 110.38016 * 241.17650 * 18 17 15 47 47 H 1.08996 * 109.57031 * 53.63937 * 21 13 12 48 48 H 1.09002 * 109.56777 * 174.00830 * 21 13 12 49 49 H 0.96996 * 119.99922 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2104 0.4280 -0.0043 6 6 5.5739 0.6594 0.0007 7 6 6.0442 1.9648 0.0003 8 7 5.2154 2.9841 0.0003 9 6 3.8980 2.8126 0.0011 10 6 3.0041 3.9900 0.0005 11 8 1.7981 3.8376 0.0018 12 7 3.5263 5.2325 -0.0004 13 6 2.6405 6.3993 -0.0004 14 6 2.9075 7.2420 1.2502 15 6 4.3247 7.8301 1.1603 16 1 4.6247 8.3204 2.0863 17 6 5.2878 6.6864 0.7666 18 6 5.2855 6.6845 -0.7765 19 6 4.3207 7.8267 -1.1701 20 1 4.6237 8.3218 -2.0927 21 6 2.9044 7.2393 -1.2536 22 7 4.3478 8.7451 -0.0061 23 6 4.3847 10.1140 -0.0079 24 1 4.6477 10.6482 0.8930 25 6 4.0840 10.8149 -1.1677 26 7 3.5893 10.1813 -2.2100 27 14 4.3815 12.6572 -1.2494 28 1 5.8226 12.9363 -1.0249 29 1 3.9820 13.1644 -2.5867 30 1 3.5769 13.3354 -0.2016 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8207 -0.5792 -0.0081 37 1 6.2667 -0.1691 0.0003 38 1 7.1090 2.1459 0.0003 39 1 4.4887 5.3541 -0.0010 40 1 1.6026 6.0667 0.0011 41 1 2.1795 8.0511 1.3075 42 1 2.8284 6.6137 2.1374 43 1 6.2903 6.8873 1.1444 44 1 4.9225 5.7336 1.1497 45 1 6.2868 6.8844 -1.1579 46 1 4.9180 5.7304 -1.1544 47 1 2.8233 6.6092 -2.1392 48 1 2.1762 8.0484 -1.3108 49 1 3.3796 10.6710 -3.0206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021477360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:52 Heat of formation + Delta-G solvation = 69.003725 kcal Electronic energy + Delta-G solvation = -31885.937956 eV Core-core repulsion = 27817.394880 eV Total energy + Delta-G solvation = -4068.543075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.25785 -40.47612 -38.46972 -37.86939 -34.06173 -32.69360 -32.30640 -31.96671 -31.05947 -30.23203 -29.97913 -28.83441 -25.28038 -24.62943 -23.84875 -23.17889 -22.41278 -21.55154 -20.27252 -19.47554 -19.38503 -18.45360 -17.81574 -17.10829 -16.60001 -16.44816 -15.57602 -14.94200 -14.80501 -14.67995 -14.45789 -14.13524 -13.72088 -13.59490 -13.42136 -13.00136 -12.88993 -12.81159 -12.76650 -12.67734 -12.50315 -12.01609 -11.93853 -11.55823 -11.52069 -11.43677 -11.16673 -10.86005 -10.83308 -10.55619 -10.23970 -10.21133 -10.06468 -10.04878 -9.95259 -9.64122 -9.36094 -9.28830 -9.25566 -8.63474 -8.54949 -7.98075 -6.75842 -5.72106 -3.06705 0.56302 1.02890 2.86847 2.97570 3.42299 3.47550 3.48021 3.57550 3.89654 4.23291 4.35499 4.50842 4.54515 4.62559 4.71630 4.83118 4.92446 4.95392 5.28078 5.30566 5.41458 5.43474 5.56096 5.58899 5.66527 5.70901 5.74792 5.78940 5.87318 5.94094 5.99720 6.12477 6.16093 6.19334 6.32193 6.48505 6.66685 6.69140 6.70694 6.76479 6.92397 7.00438 7.04686 7.11894 7.26275 7.59901 7.60813 7.63000 7.80043 8.14958 8.28319 8.73598 9.18074 9.80286 10.59821 11.40374 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020510 B = 0.002942 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.878163 B = 9516.406729 C =10252.067657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.269 6.269 4 C 0.136 3.864 5 C -0.179 4.179 6 C -0.112 4.112 7 C 0.057 3.943 8 N -0.420 5.420 9 C 0.051 3.949 10 C 0.549 3.451 11 O -0.532 6.532 12 N -0.717 5.717 13 C 0.140 3.860 14 C -0.137 4.137 15 C 0.149 3.851 16 H 0.067 0.933 17 C -0.159 4.159 18 C -0.171 4.171 19 C 0.182 3.818 20 H 0.110 0.890 21 C -0.123 4.123 22 N -0.583 5.583 23 C -0.223 4.223 24 H 0.074 0.926 25 C -0.005 4.005 26 N -0.912 5.912 27 Si 0.910 3.090 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.436 0.564 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -23.095 4.321 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.179 6.179 4 C 0.085 3.915 5 C -0.205 4.205 6 C -0.132 4.132 7 C -0.104 4.104 8 N -0.132 5.132 9 C -0.089 4.089 10 C 0.333 3.667 11 O -0.409 6.409 12 N -0.391 5.391 13 C 0.036 3.964 14 C -0.178 4.178 15 C 0.041 3.959 16 H 0.085 0.915 17 C -0.199 4.199 18 C -0.210 4.210 19 C 0.075 3.925 20 H 0.128 0.872 21 C -0.163 4.163 22 N -0.304 5.304 23 C -0.352 4.352 24 H 0.092 0.908 25 C -0.202 4.202 26 N -0.558 5.558 27 Si 0.740 3.260 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.299 0.701 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.357 -21.896 4.163 22.330 hybrid contribution 0.355 -0.319 -0.085 0.485 sum 1.712 -22.215 4.078 22.651 Atomic orbital electron populations 1.21734 0.92234 1.02499 1.04256 1.22931 0.96761 0.82220 1.01040 1.86458 1.16827 1.28339 1.86232 1.20041 0.84260 0.93770 0.93398 1.21728 0.94204 0.98624 1.05975 1.22170 0.95211 0.98882 0.96971 1.22720 0.99991 0.87818 0.99861 1.67667 1.01845 1.35523 1.08137 1.20976 0.90312 0.91582 1.05981 1.17903 0.87112 0.83597 0.78092 1.90772 1.13844 1.85947 1.50346 1.49047 1.14295 1.04382 1.71359 1.21139 0.94221 0.84336 0.96671 1.22505 1.00636 0.98812 0.95824 1.21538 0.91797 0.90167 0.92439 0.91460 1.23237 1.00383 0.99715 0.96526 1.23401 1.01478 1.00966 0.95200 1.21458 0.90131 0.86995 0.93915 0.87216 1.22340 1.01903 0.98192 0.93867 1.45144 1.85010 1.00707 0.99543 1.18936 1.39310 0.79622 0.97283 0.90804 1.24829 1.00352 0.97756 0.97239 1.69860 1.47405 1.34469 1.04035 0.86246 0.77879 0.85166 0.76702 1.21307 1.21709 1.21195 0.91162 0.90514 0.91199 0.92052 0.92079 0.83891 0.84112 0.81794 0.70140 0.89914 0.90803 0.93445 0.92311 0.90039 0.92391 0.90157 0.93885 0.89599 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.41 5.48 37.16 0.20 0.61 16 3 O -0.27 -3.78 8.20 -40.58 -0.33 -4.11 16 4 C 0.14 1.84 6.71 -38.55 -0.26 1.59 16 5 C -0.18 -1.68 9.13 -39.15 -0.36 -2.04 16 6 C -0.11 -0.91 10.10 -39.37 -0.40 -1.31 16 7 C 0.06 0.57 11.17 -17.55 -0.20 0.37 16 8 N -0.42 -5.85 9.54 -9.71 -0.09 -5.95 16 9 C 0.05 0.80 6.76 -82.88 -0.56 0.24 16 10 C 0.55 10.33 7.80 -12.34 -0.10 10.23 16 11 O -0.53 -11.30 14.46 -16.64 -0.24 -11.54 16 12 N -0.72 -13.30 2.77 -54.61 -0.15 -13.45 16 13 C 0.14 2.83 3.15 -67.78 -0.21 2.62 16 14 C -0.14 -2.72 5.49 -26.29 -0.14 -2.87 16 15 C 0.15 3.08 4.32 -65.74 -0.28 2.80 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.16 -2.91 5.75 -25.20 -0.14 -3.05 16 18 C -0.17 -3.33 5.76 -25.20 -0.15 -3.47 16 19 C 0.18 4.23 3.13 -65.81 -0.21 4.03 16 20 H 0.11 2.91 6.36 -51.93 -0.33 2.58 16 21 C -0.12 -2.74 5.39 -26.36 -0.14 -2.88 16 22 N -0.58 -14.33 2.82 -152.87 -0.43 -14.76 16 23 C -0.22 -6.04 10.38 -15.06 -0.16 -6.20 16 24 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 25 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 26 N -0.91 -25.75 10.59 55.49 0.59 -25.16 16 27 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 35 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 36 H 0.14 0.90 6.46 -52.49 -0.34 0.56 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.44 7.69 1.22 -65.41 -0.08 7.61 16 40 H 0.08 1.74 6.89 -51.93 -0.36 1.39 16 41 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.42 5.27 -51.93 -0.27 1.14 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.50 5.27 -51.93 -0.27 1.23 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 2.16 7.99 -51.93 -0.41 1.74 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -32.34 375.89 -9.90 -42.24 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.07 Total: 10.70 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.81 Total: -0.38 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.09 Total: -59.31 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.57 Total: -15.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.34 -9.90 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021477360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.245 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds