Wall clock time and date at job start Wed Apr 1 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47412 * 2 1 4 4 C 1.35644 * 117.00196 * 179.97438 * 3 2 1 5 5 C 1.39344 * 120.54269 * 0.25472 * 4 3 2 6 6 C 1.38299 * 118.43900 * 180.19633 * 5 4 3 7 7 C 1.38762 * 119.44561 * 359.53108 * 6 5 4 8 8 N 1.31376 * 121.06959 * 0.25279 * 7 6 5 9 9 C 1.32855 * 121.69571 * 0.02562 * 8 7 6 10 10 C 1.47831 * 119.78416 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99784 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99940 * 359.97438 * 10 9 8 13 13 C 1.46498 * 119.99795 * 180.02562 * 12 10 9 14 14 C 1.53146 * 109.43958 * 119.96265 * 13 12 10 15 15 C 1.53699 * 108.87712 * 66.17063 * 14 13 12 16 16 H 1.08995 * 112.10075 * 188.25941 * 15 14 13 17 17 C 1.54611 * 107.83203 * 312.23209 * 15 14 13 18 18 C 1.54311 * 104.75049 * 88.67091 * 17 15 14 19 19 C 1.54607 * 104.75068 * 359.97438 * 18 17 15 20 20 H 1.08998 * 112.18853 * 146.80303 * 19 18 17 21 21 C 1.53157 * 109.43018 * 240.14069 * 13 12 10 22 22 N 1.48293 * 104.26189 * 25.14326 * 19 18 17 23 23 C 1.36935 * 128.21360 * 138.42422 * 22 19 18 24 24 H 1.07993 * 119.99972 * 195.29937 * 23 22 19 25 25 C 1.38813 * 119.99699 * 15.29733 * 23 22 19 26 26 N 1.31621 * 120.00227 * 9.24205 * 25 23 22 27 27 Si 1.86799 * 119.99950 * 189.24643 * 25 23 22 28 28 H 1.48497 * 109.47144 * 59.99858 * 27 25 23 29 29 H 1.48500 * 109.47205 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47003 * 299.99904 * 27 25 23 31 31 H 1.09005 * 109.46839 * 59.99924 * 1 2 3 32 32 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46903 * 300.00443 * 1 2 3 34 34 H 1.09000 * 109.47551 * 239.99943 * 2 1 3 35 35 H 1.09000 * 109.47296 * 120.00156 * 2 1 3 36 36 H 1.07994 * 120.77738 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.27562 * 179.80466 * 6 5 4 38 38 H 1.08006 * 119.46693 * 180.23356 * 7 6 5 39 39 H 0.96997 * 119.99903 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.43902 * 0.04323 * 13 12 10 41 41 H 1.08994 * 109.56924 * 185.98956 * 14 13 12 42 42 H 1.09003 * 109.56398 * 306.35107 * 14 13 12 43 43 H 1.09000 * 110.38025 * 207.48506 * 17 15 14 44 44 H 1.08997 * 110.38455 * 329.73436 * 17 15 14 45 45 H 1.08998 * 110.38167 * 118.81636 * 18 17 15 46 46 H 1.09001 * 110.38016 * 241.17650 * 18 17 15 47 47 H 1.08996 * 109.57031 * 53.63937 * 21 13 12 48 48 H 1.09002 * 109.56777 * 174.00830 * 21 13 12 49 49 H 0.96996 * 119.99922 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2104 0.4280 -0.0043 6 6 5.5739 0.6594 0.0007 7 6 6.0442 1.9648 0.0003 8 7 5.2154 2.9841 0.0003 9 6 3.8980 2.8126 0.0011 10 6 3.0041 3.9900 0.0005 11 8 1.7981 3.8376 0.0018 12 7 3.5263 5.2325 -0.0004 13 6 2.6405 6.3993 -0.0004 14 6 2.9075 7.2420 1.2502 15 6 4.3247 7.8301 1.1603 16 1 4.6247 8.3204 2.0863 17 6 5.2878 6.6864 0.7666 18 6 5.2855 6.6845 -0.7765 19 6 4.3207 7.8267 -1.1701 20 1 4.6237 8.3218 -2.0927 21 6 2.9044 7.2393 -1.2536 22 7 4.3478 8.7451 -0.0061 23 6 4.3847 10.1140 -0.0079 24 1 4.6477 10.6482 0.8930 25 6 4.0840 10.8149 -1.1677 26 7 3.5893 10.1813 -2.2100 27 14 4.3815 12.6572 -1.2494 28 1 5.8226 12.9363 -1.0249 29 1 3.9820 13.1644 -2.5867 30 1 3.5769 13.3354 -0.2016 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8207 -0.5792 -0.0081 37 1 6.2667 -0.1691 0.0003 38 1 7.1090 2.1459 0.0003 39 1 4.4887 5.3541 -0.0010 40 1 1.6026 6.0667 0.0011 41 1 2.1795 8.0511 1.3075 42 1 2.8284 6.6137 2.1374 43 1 6.2903 6.8873 1.1444 44 1 4.9225 5.7336 1.1497 45 1 6.2868 6.8844 -1.1579 46 1 4.9180 5.7304 -1.1544 47 1 2.8233 6.6092 -2.1392 48 1 2.1762 8.0484 -1.3108 49 1 3.3796 10.6710 -3.0206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021477360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:51 Heat of formation + Delta-G solvation = 50.366013 kcal Electronic energy + Delta-G solvation = -31886.746147 eV Core-core repulsion = 27817.394880 eV Total energy + Delta-G solvation = -4069.351267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.64072 -41.60026 -39.46300 -39.18349 -35.80982 -33.99364 -33.47623 -33.03764 -32.53238 -31.93096 -31.06326 -30.53977 -26.70919 -25.81767 -24.96949 -24.87223 -23.24997 -22.99276 -21.70943 -21.20756 -20.97298 -19.55692 -19.02467 -18.55601 -17.73562 -17.23555 -16.86120 -16.70582 -16.05346 -15.94623 -15.81237 -15.33691 -15.06304 -14.71489 -14.61692 -14.56056 -14.43825 -14.28740 -13.78947 -13.73598 -13.54221 -13.46685 -13.32094 -13.23024 -13.16389 -12.74344 -12.64821 -12.40170 -12.26268 -12.06672 -11.92429 -11.83454 -11.74510 -11.42187 -11.16947 -11.10485 -11.02565 -10.79539 -10.57865 -10.49162 -9.69387 -9.38647 -8.74561 -7.80179 -5.15798 -0.31740 0.26366 1.49597 1.51462 1.57627 1.83333 2.11221 2.29712 2.53309 2.87615 3.29597 3.37311 3.54977 3.62989 3.77398 3.93184 3.95227 4.02775 4.03151 4.15757 4.17143 4.20578 4.28784 4.31228 4.33980 4.40275 4.48791 4.55061 4.68999 4.78683 4.83091 4.90779 4.92593 4.94565 5.01640 5.03444 5.09496 5.11460 5.22273 5.25975 5.27267 5.42243 5.48999 5.56894 5.59564 5.79070 5.82869 6.28278 6.28652 6.57613 6.89526 7.11242 7.32577 7.77942 8.59095 9.30802 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020510 B = 0.002942 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.878163 B = 9516.406729 C =10252.067657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.036 3.964 3 O -0.307 6.307 4 C 0.124 3.876 5 C -0.172 4.172 6 C -0.085 4.085 7 C 0.053 3.947 8 N -0.444 5.444 9 C 0.003 3.997 10 C 0.544 3.456 11 O -0.569 6.569 12 N -0.714 5.714 13 C 0.150 3.850 14 C -0.130 4.130 15 C 0.142 3.858 16 H 0.077 0.923 17 C -0.145 4.145 18 C -0.159 4.159 19 C 0.179 3.821 20 H 0.073 0.927 21 C -0.112 4.112 22 N -0.601 5.601 23 C -0.234 4.234 24 H 0.078 0.922 25 C -0.058 4.058 26 N -0.936 5.936 27 Si 0.972 3.028 28 H -0.280 1.280 29 H -0.298 1.298 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.197 0.803 39 H 0.441 0.559 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.048 0.952 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -26.556 5.621 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 O -0.218 6.218 4 C 0.073 3.927 5 C -0.198 4.198 6 C -0.105 4.105 7 C -0.110 4.110 8 N -0.156 5.156 9 C -0.133 4.133 10 C 0.331 3.669 11 O -0.449 6.449 12 N -0.388 5.388 13 C 0.045 3.955 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.095 0.905 17 C -0.184 4.184 18 C -0.198 4.198 19 C 0.072 3.928 20 H 0.091 0.909 21 C -0.152 4.152 22 N -0.323 5.323 23 C -0.363 4.363 24 H 0.096 0.904 25 C -0.252 4.252 26 N -0.584 5.584 27 Si 0.802 3.198 28 H -0.206 1.206 29 H -0.225 1.225 30 H -0.207 1.207 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.196 0.804 37 H 0.208 0.792 38 H 0.214 0.786 39 H 0.304 0.696 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.953 -25.374 5.490 26.261 hybrid contribution -0.419 0.582 -0.485 0.866 sum 3.534 -24.793 5.005 25.539 Atomic orbital electron populations 1.21788 0.92325 1.04072 1.02544 1.23268 0.96817 0.80592 1.03104 1.86415 1.17635 1.31373 1.86391 1.20245 0.84684 0.94191 0.93557 1.22168 0.94326 0.98887 1.04386 1.22734 0.95331 0.99475 0.92950 1.23439 1.00994 0.88106 0.98428 1.67554 1.01290 1.37588 1.09128 1.20441 0.90887 0.90977 1.10974 1.18498 0.87335 0.84375 0.76684 1.90733 1.15627 1.86608 1.51890 1.48877 1.13948 1.04015 1.71951 1.20817 0.94076 0.84861 0.95715 1.22407 0.99813 0.98393 0.96383 1.21766 0.92671 0.90363 0.91705 0.90454 1.23118 1.00767 0.99257 0.95271 1.23253 1.00664 0.99602 0.96304 1.21327 0.91177 0.87891 0.92444 0.90924 1.22141 1.00768 0.97221 0.95082 1.45329 1.85184 1.00573 1.01201 1.19278 1.38477 0.81142 0.97356 0.90424 1.25570 1.00884 1.01597 0.97187 1.70066 1.48637 1.35501 1.04193 0.85251 0.77845 0.80610 0.76135 1.20599 1.22455 1.20669 0.92987 0.87225 0.92803 0.89931 0.89741 0.80365 0.79199 0.78581 0.69604 0.91279 0.92713 0.91247 0.90361 0.88576 0.91610 0.89293 0.94224 0.93323 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.04 0.58 5.48 71.98 0.39 0.97 16 3 O -0.31 -8.54 8.20 -68.59 -0.56 -9.10 16 4 C 0.12 3.18 6.71 22.94 0.15 3.33 16 5 C -0.17 -2.49 9.13 22.55 0.21 -2.29 16 6 C -0.09 -0.90 10.10 22.41 0.23 -0.68 16 7 C 0.05 0.84 11.17 84.89 0.95 1.79 16 8 N -0.44 -11.45 9.54 -184.62 -1.76 -13.21 16 9 C 0.00 0.10 6.76 41.93 0.28 0.39 16 10 C 0.54 21.00 7.80 86.78 0.68 21.68 16 11 O -0.57 -25.36 14.46 17.09 0.25 -25.12 16 12 N -0.71 -26.86 2.77 -444.95 -1.23 -28.09 16 13 C 0.15 6.33 3.15 45.09 0.14 6.47 16 14 C -0.13 -5.23 5.49 30.88 0.17 -5.06 16 15 C 0.14 5.84 4.32 45.43 0.20 6.04 16 16 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 17 C -0.14 -5.08 5.75 31.59 0.18 -4.90 16 18 C -0.16 -6.14 5.76 31.59 0.18 -5.95 16 19 C 0.18 8.62 3.13 45.38 0.14 8.76 16 20 H 0.07 4.06 6.36 -2.39 -0.02 4.04 16 21 C -0.11 -5.30 5.39 30.83 0.17 -5.13 16 22 N -0.60 -30.19 2.82 -637.55 -1.80 -31.99 16 23 C -0.23 -12.88 10.38 84.03 0.87 -12.01 16 24 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 25 C -0.06 -3.27 5.42 84.86 0.46 -2.81 16 26 N -0.94 -55.37 10.59 21.65 0.23 -55.14 16 27 Si 0.97 45.81 29.56 68.60 2.03 47.84 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 30 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.92 7.69 -2.39 -0.02 0.90 16 35 H 0.08 0.91 7.71 -2.39 -0.02 0.89 16 36 H 0.18 1.24 6.46 -2.91 -0.02 1.22 16 37 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.44 15.32 1.22 -115.81 -0.14 15.17 16 40 H 0.07 3.10 6.89 -2.39 -0.02 3.09 16 41 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.10 3.17 5.27 -2.39 -0.01 3.16 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.09 3.32 5.27 -2.39 -0.01 3.31 16 47 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.05 2.63 7.99 -2.39 -0.02 2.61 16 49 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -76.47 375.89 4.13 -72.34 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.83 Total: 33.46 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.14 Total: 9.01 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -4.56 Total: -128.43 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.32 Total: -34.22 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.47 4.13 -72.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021477360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.709 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds