Wall clock time and date at job start Wed Apr 1 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47048 * 2 1 4 4 C 1.35492 * 116.99994 * 180.02562 * 3 2 1 5 5 C 1.39179 * 119.52790 * 180.02562 * 4 3 2 6 6 C 1.37950 * 119.26335 * 179.72201 * 5 4 3 7 7 C 1.40287 * 118.35804 * 0.52022 * 6 5 4 8 8 C 1.47613 * 120.49677 * 179.75373 * 7 6 5 9 9 O 1.21585 * 120.00057 * 22.56704 * 8 7 6 10 10 N 1.34780 * 119.99737 * 202.55644 * 8 7 6 11 11 C 1.49208 * 126.06195 * 354.60985 * 10 8 7 12 12 C 1.50348 * 104.86594 * 172.90990 * 11 10 8 13 13 H 1.09005 * 109.74157 * 279.05625 * 12 11 10 14 14 C 1.51008 * 125.54202 * 144.29704 * 12 11 10 15 15 C 1.56404 * 101.59649 * 204.00471 * 14 12 11 16 16 C 1.55948 * 105.78866 * 25.01793 * 15 14 12 17 17 H 1.08996 * 110.60741 * 248.82119 * 16 15 14 18 18 N 1.46492 * 110.49466 * 126.20751 * 16 15 14 19 19 C 1.36945 * 119.99865 * 90.26191 * 18 16 15 20 20 H 1.07991 * 119.99811 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99952 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99668 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99873 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46889 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47117 * 120.00389 * 23 21 19 26 26 H 1.48499 * 109.47219 * 240.00179 * 23 21 19 27 27 C 1.50290 * 104.15422 * 7.54179 * 16 15 14 28 28 H 1.08999 * 109.99172 * 80.47486 * 27 16 15 29 29 C 1.49697 * 126.05636 * 174.57916 * 10 8 7 30 30 C 1.39524 * 119.00116 * 359.48184 * 7 6 5 31 31 N 1.31658 * 120.62887 * 0.25096 * 30 7 6 32 32 H 1.09010 * 109.46632 * 299.99467 * 1 2 3 33 33 H 1.08996 * 109.47783 * 59.99336 * 1 2 3 34 34 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46544 * 240.00978 * 2 1 3 36 36 H 1.08990 * 109.47687 * 120.00205 * 2 1 3 37 37 H 1.08002 * 120.36437 * 0.02562 * 5 4 3 38 38 H 1.07997 * 120.82217 * 180.28043 * 6 5 4 39 39 H 1.08998 * 110.35979 * 54.06196 * 11 10 8 40 40 H 1.08998 * 110.36172 * 291.75649 * 11 10 8 41 41 H 1.08997 * 110.99722 * 322.08456 * 14 12 11 42 42 H 1.09001 * 111.00021 * 85.92666 * 14 12 11 43 43 H 1.08994 * 110.18627 * 265.94055 * 15 14 12 44 44 H 1.08998 * 110.18445 * 144.09838 * 15 14 12 45 45 H 0.97003 * 120.00567 * 270.26893 * 18 16 15 46 46 H 0.97000 * 119.99532 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.84433 * 36.69319 * 29 10 8 48 48 H 1.09004 * 111.02022 * 273.16555 * 29 10 8 49 49 H 1.07998 * 119.68326 * 180.27382 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8153 0.0000 6 6 5.2393 2.9897 0.0053 7 6 6.0565 1.8494 -0.0013 8 6 7.5267 1.9814 -0.0015 9 8 8.0456 3.0020 0.4077 10 7 8.2939 0.9703 -0.4551 11 6 7.8114 -0.3764 -0.8793 12 6 9.0216 -1.0548 -1.4586 13 1 9.1765 -0.7190 -2.4840 14 6 9.3440 -2.5254 -1.3410 15 6 10.8965 -2.5231 -1.5304 16 6 11.3747 -1.1034 -1.0971 17 1 11.7312 -0.5391 -1.9588 18 7 12.4251 -1.2039 -0.0810 19 6 13.7401 -1.2625 -0.4591 20 1 14.0026 -1.2343 -1.5062 21 6 14.7355 -1.3572 0.5038 22 7 14.4155 -1.3912 1.7800 23 14 16.5292 -1.4365 -0.0119 24 1 16.6213 -1.3809 -1.4930 25 1 17.2636 -0.2859 0.5729 26 1 17.1285 -2.7051 0.4745 27 6 10.1444 -0.4614 -0.5203 28 1 9.9911 -0.8026 0.5035 29 6 9.7811 0.9997 -0.6231 30 6 5.4586 0.5888 -0.0018 31 7 4.1475 0.4682 -0.0011 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 3.2114 3.6706 0.0012 38 1 5.6710 3.9797 0.0103 39 1 7.0327 -0.2792 -1.6358 40 1 7.4390 -0.9339 -0.0199 41 1 9.0709 -2.9077 -0.3575 42 1 8.8550 -3.0968 -2.1300 43 1 11.1482 -2.7020 -2.5757 44 1 11.3537 -3.2835 -0.8973 45 1 12.1894 -1.2290 0.8596 46 1 15.1110 -1.4577 2.4528 47 1 10.2505 1.5733 0.1762 48 1 10.0566 1.4002 -1.5987 49 1 6.0771 -0.2965 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026281305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:14 Heat of formation + Delta-G solvation = 6.283709 kcal Electronic energy + Delta-G solvation = -29893.584784 eV Core-core repulsion = 25822.321965 eV Total energy + Delta-G solvation = -4071.262819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28584 -40.41794 -38.92214 -37.87480 -35.47099 -33.47298 -32.87348 -32.54175 -31.10976 -30.87302 -29.02590 -28.65859 -25.64881 -24.78207 -24.59208 -23.17950 -22.83095 -22.44749 -20.34452 -19.95823 -19.26421 -18.82077 -17.62333 -17.22210 -16.99434 -16.71269 -16.20216 -15.34197 -15.21080 -15.03612 -14.65431 -14.36909 -14.30734 -14.06280 -13.90703 -13.72893 -13.64022 -13.14866 -12.94110 -12.92909 -12.75418 -12.67037 -12.17728 -11.99074 -11.85784 -11.60950 -11.44565 -11.15013 -11.13739 -10.83707 -10.80315 -10.49022 -10.32140 -10.25193 -10.15415 -10.10546 -9.87024 -9.74720 -9.58064 -8.94335 -8.91587 -8.68222 -6.99356 -5.79218 -3.08500 0.47190 0.85355 2.57587 2.68708 2.77240 3.42101 3.47889 3.50122 3.51421 3.84824 4.01169 4.36217 4.49767 4.55958 4.58227 4.59277 4.67092 4.75989 4.78468 4.97051 5.00210 5.12616 5.21727 5.24884 5.28585 5.37037 5.40234 5.47777 5.52703 5.54046 5.61733 5.65513 5.72803 5.82147 5.89917 5.91959 5.98878 5.99396 6.09415 6.17420 6.29293 6.31671 6.46482 6.59436 6.75404 6.81512 7.02203 7.38358 7.42701 7.69130 8.06733 8.38899 9.50408 10.06879 10.41014 11.43179 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002092 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.634919 B =13378.470351 C =14155.151166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.339 3.661 5 C -0.198 4.198 6 C 0.014 3.986 7 C -0.219 4.219 8 C 0.582 3.418 9 O -0.537 6.537 10 N -0.619 5.619 11 C 0.112 3.888 12 C -0.130 4.130 13 H 0.084 0.916 14 C -0.097 4.097 15 C -0.143 4.143 16 C 0.196 3.804 17 H 0.057 0.943 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.118 4.118 28 H 0.083 0.917 29 C 0.130 3.870 30 C 0.157 3.843 31 N -0.543 5.543 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.007 2.133 -6.548 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.160 3.840 5 C -0.218 4.218 6 C -0.011 4.011 7 C -0.224 4.224 8 C 0.370 3.630 9 O -0.414 6.414 10 N -0.354 5.354 11 C -0.010 4.010 12 C -0.150 4.150 13 H 0.102 0.898 14 C -0.135 4.135 15 C -0.184 4.184 16 C 0.085 3.915 17 H 0.075 0.925 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.138 4.138 28 H 0.101 0.899 29 C 0.009 3.991 30 C 0.000 4.000 31 N -0.266 5.266 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.216 2.136 -6.374 28.034 hybrid contribution 1.283 0.428 0.123 1.358 sum -25.933 2.564 -6.251 26.799 Atomic orbital electron populations 1.21832 0.92871 1.03059 1.03341 1.22678 0.94843 0.80719 1.02866 1.86204 1.16797 1.31152 1.86959 1.20095 0.84110 0.90125 0.89627 1.21029 0.95504 0.95881 1.09423 1.21501 0.91535 0.99307 0.88781 1.20786 0.94560 0.95305 1.11793 1.17524 0.85429 0.82501 0.77521 1.90810 1.74426 1.29065 1.47142 1.49727 1.08546 1.12897 1.64192 1.21640 0.97154 0.83357 0.98832 1.22209 0.94636 0.97758 1.00386 0.89781 1.21752 0.97480 0.92866 1.01442 1.23811 0.92637 1.01035 1.00961 1.20088 0.86590 0.92228 0.92604 0.92501 1.42500 1.01538 1.87724 1.04221 1.19291 0.82921 1.42536 0.92449 0.91055 1.24754 0.97994 1.02865 0.95261 1.69671 1.31912 1.57323 0.99019 0.86138 0.85429 0.77184 0.77551 1.20545 1.21883 1.21911 1.22548 0.97035 0.93817 1.00435 0.89906 1.21547 0.77696 0.97398 1.02432 1.23694 0.89400 0.97578 0.89339 1.67436 1.06294 1.32695 1.20197 0.91607 0.91624 0.90138 0.91324 0.91319 0.83417 0.82941 0.90606 0.90554 0.91509 0.92061 0.92619 0.90698 0.78143 0.93530 0.89541 0.90874 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.06 0.47 6.02 37.16 0.22 0.70 16 3 O -0.30 -2.92 10.10 -18.17 -0.18 -3.10 16 4 C 0.34 3.56 7.49 -16.95 -0.13 3.43 16 5 C -0.20 -1.85 10.02 -39.34 -0.39 -2.25 16 6 C 0.01 0.15 9.71 -38.92 -0.38 -0.23 16 7 C -0.22 -2.60 5.82 -104.82 -0.61 -3.21 16 8 C 0.58 8.46 7.72 -12.43 -0.10 8.36 16 9 O -0.54 -9.70 16.94 5.29 0.09 -9.61 16 10 N -0.62 -8.26 3.43 -172.76 -0.59 -8.85 16 11 C 0.11 1.15 4.80 -3.86 -0.02 1.13 16 12 C -0.13 -1.50 2.77 -90.26 -0.25 -1.75 16 13 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.10 -1.15 6.72 -25.90 -0.17 -1.32 16 15 C -0.14 -2.24 6.74 -23.32 -0.16 -2.39 16 16 C 0.20 3.55 3.41 -67.71 -0.23 3.32 16 17 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 18 N -0.72 -17.09 5.10 -53.21 -0.27 -17.36 16 19 C -0.24 -6.45 9.96 -15.05 -0.15 -6.60 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.12 -1.79 2.41 -90.34 -0.22 -2.01 16 28 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 29 C 0.13 1.95 6.83 -3.31 -0.02 1.93 16 30 C 0.16 1.66 9.54 -17.15 -0.16 1.49 16 31 N -0.54 -5.90 9.18 -12.97 -0.12 -6.02 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.15 1.45 7.89 -52.49 -0.41 1.04 16 39 H 0.08 0.66 7.17 -51.93 -0.37 0.28 16 40 H 0.08 0.70 6.48 -51.93 -0.34 0.36 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 45 H 0.38 9.84 7.67 -40.82 -0.31 9.53 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.18 1.62 3.77 -52.49 -0.20 1.43 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -32.27 394.98 -9.39 -41.67 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.49 Total: 7.48 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.48 Total: -0.24 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.26 Total: -59.21 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.09 Total: -12.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.27 -9.39 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026281305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.950 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds