Wall clock time and date at job start Wed Apr 1 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47048 * 2 1 4 4 C 1.35492 * 116.99994 * 180.02562 * 3 2 1 5 5 C 1.39179 * 119.52790 * 180.02562 * 4 3 2 6 6 C 1.37950 * 119.26335 * 179.72201 * 5 4 3 7 7 C 1.40287 * 118.35804 * 0.52022 * 6 5 4 8 8 C 1.47613 * 120.49677 * 179.75373 * 7 6 5 9 9 O 1.21585 * 120.00057 * 22.56704 * 8 7 6 10 10 N 1.34780 * 119.99737 * 202.55644 * 8 7 6 11 11 C 1.49208 * 126.06195 * 354.60985 * 10 8 7 12 12 C 1.50348 * 104.86594 * 172.90990 * 11 10 8 13 13 H 1.09005 * 109.74157 * 279.05625 * 12 11 10 14 14 C 1.51008 * 125.54202 * 144.29704 * 12 11 10 15 15 C 1.56404 * 101.59649 * 204.00471 * 14 12 11 16 16 C 1.55948 * 105.78866 * 25.01793 * 15 14 12 17 17 H 1.08996 * 110.60741 * 248.82119 * 16 15 14 18 18 N 1.46492 * 110.49466 * 126.20751 * 16 15 14 19 19 C 1.36945 * 119.99865 * 90.26191 * 18 16 15 20 20 H 1.07991 * 119.99811 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99952 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99668 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99873 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46889 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47117 * 120.00389 * 23 21 19 26 26 H 1.48499 * 109.47219 * 240.00179 * 23 21 19 27 27 C 1.50290 * 104.15422 * 7.54179 * 16 15 14 28 28 H 1.08999 * 109.99172 * 80.47486 * 27 16 15 29 29 C 1.49697 * 126.05636 * 174.57916 * 10 8 7 30 30 C 1.39524 * 119.00116 * 359.48184 * 7 6 5 31 31 N 1.31658 * 120.62887 * 0.25096 * 30 7 6 32 32 H 1.09010 * 109.46632 * 299.99467 * 1 2 3 33 33 H 1.08996 * 109.47783 * 59.99336 * 1 2 3 34 34 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46544 * 240.00978 * 2 1 3 36 36 H 1.08990 * 109.47687 * 120.00205 * 2 1 3 37 37 H 1.08002 * 120.36437 * 0.02562 * 5 4 3 38 38 H 1.07997 * 120.82217 * 180.28043 * 6 5 4 39 39 H 1.08998 * 110.35979 * 54.06196 * 11 10 8 40 40 H 1.08998 * 110.36172 * 291.75649 * 11 10 8 41 41 H 1.08997 * 110.99722 * 322.08456 * 14 12 11 42 42 H 1.09001 * 111.00021 * 85.92666 * 14 12 11 43 43 H 1.08994 * 110.18627 * 265.94055 * 15 14 12 44 44 H 1.08998 * 110.18445 * 144.09838 * 15 14 12 45 45 H 0.97003 * 120.00567 * 270.26893 * 18 16 15 46 46 H 0.97000 * 119.99532 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.84433 * 36.69319 * 29 10 8 48 48 H 1.09004 * 111.02022 * 273.16555 * 29 10 8 49 49 H 1.07998 * 119.68326 * 180.27382 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8153 0.0000 6 6 5.2393 2.9897 0.0053 7 6 6.0565 1.8494 -0.0013 8 6 7.5267 1.9814 -0.0015 9 8 8.0456 3.0020 0.4077 10 7 8.2939 0.9703 -0.4551 11 6 7.8114 -0.3764 -0.8793 12 6 9.0216 -1.0548 -1.4586 13 1 9.1765 -0.7190 -2.4840 14 6 9.3440 -2.5254 -1.3410 15 6 10.8965 -2.5231 -1.5304 16 6 11.3747 -1.1034 -1.0971 17 1 11.7312 -0.5391 -1.9588 18 7 12.4251 -1.2039 -0.0810 19 6 13.7401 -1.2625 -0.4591 20 1 14.0026 -1.2343 -1.5062 21 6 14.7355 -1.3572 0.5038 22 7 14.4155 -1.3912 1.7800 23 14 16.5292 -1.4365 -0.0119 24 1 16.6213 -1.3809 -1.4930 25 1 17.2636 -0.2859 0.5729 26 1 17.1285 -2.7051 0.4745 27 6 10.1444 -0.4614 -0.5203 28 1 9.9911 -0.8026 0.5035 29 6 9.7811 0.9997 -0.6231 30 6 5.4586 0.5888 -0.0018 31 7 4.1475 0.4682 -0.0011 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 3.2114 3.6706 0.0012 38 1 5.6710 3.9797 0.0103 39 1 7.0327 -0.2792 -1.6358 40 1 7.4390 -0.9339 -0.0199 41 1 9.0709 -2.9077 -0.3575 42 1 8.8550 -3.0968 -2.1300 43 1 11.1482 -2.7020 -2.5757 44 1 11.3537 -3.2835 -0.8973 45 1 12.1894 -1.2290 0.8596 46 1 15.1110 -1.4577 2.4528 47 1 10.2505 1.5733 0.1762 48 1 10.0566 1.4002 -1.5987 49 1 6.0771 -0.2965 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026281305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:13 Heat of formation + Delta-G solvation = -15.512629 kcal Electronic energy + Delta-G solvation = -29894.529944 eV Core-core repulsion = 25822.321965 eV Total energy + Delta-G solvation = -4072.207980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20803 -41.40072 -39.95960 -38.76772 -36.87995 -35.13724 -33.67604 -33.21651 -32.67930 -31.86265 -30.13482 -29.90373 -27.11081 -25.74168 -25.37073 -24.83136 -23.86000 -23.19257 -21.46703 -20.98218 -20.54629 -19.55923 -19.14678 -18.53126 -18.07955 -17.42256 -17.25681 -16.65817 -16.33854 -16.15045 -15.93469 -15.47211 -15.35817 -15.13680 -14.98760 -14.81473 -14.52193 -14.43762 -14.07919 -13.99147 -13.46997 -13.35481 -13.29968 -13.15753 -13.09752 -12.90693 -12.59958 -12.50011 -12.45037 -12.24384 -12.07756 -11.79370 -11.72888 -11.56829 -11.38385 -11.20595 -11.11447 -11.00194 -10.91444 -10.67095 -9.87197 -9.62719 -8.97089 -7.92799 -5.20369 -0.38188 0.08031 1.47409 1.48287 1.57801 1.64316 1.70573 1.92301 2.57295 2.66033 2.92816 3.08935 3.41601 3.41714 3.69396 3.70957 3.84341 3.94008 3.95874 4.05667 4.10825 4.19168 4.20502 4.29223 4.39302 4.47542 4.50051 4.53116 4.54602 4.62213 4.68444 4.73211 4.77609 4.86071 4.88450 4.92987 4.97206 4.99660 5.10335 5.16205 5.21032 5.26162 5.28067 5.39573 5.50868 5.54473 5.66662 6.10375 6.29871 6.35618 6.59548 6.96067 7.35579 8.13204 8.34320 9.30929 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002092 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.634919 B =13378.470351 C =14155.151166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.333 3.667 5 C -0.192 4.192 6 C 0.012 3.988 7 C -0.233 4.233 8 C 0.579 3.421 9 O -0.584 6.584 10 N -0.617 5.617 11 C 0.111 3.889 12 C -0.106 4.106 13 H 0.096 0.904 14 C -0.084 4.084 15 C -0.138 4.138 16 C 0.186 3.814 17 H 0.052 0.948 18 N -0.734 5.734 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.298 1.298 26 H -0.295 1.295 27 C -0.122 4.122 28 H 0.066 0.934 29 C 0.132 3.868 30 C 0.164 3.836 31 N -0.549 5.549 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.371 0.629 46 H 0.248 0.752 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.755 1.142 -8.620 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.216 6.216 4 C 0.154 3.846 5 C -0.212 4.212 6 C -0.014 4.014 7 C -0.239 4.239 8 C 0.370 3.630 9 O -0.465 6.465 10 N -0.350 5.350 11 C -0.009 4.009 12 C -0.125 4.125 13 H 0.114 0.886 14 C -0.122 4.122 15 C -0.178 4.178 16 C 0.077 3.923 17 H 0.070 0.930 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.226 1.226 26 H -0.222 1.222 27 C -0.142 4.142 28 H 0.084 0.916 29 C 0.010 3.990 30 C 0.007 3.993 31 N -0.273 5.273 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.189 0.811 38 H 0.174 0.826 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.203 0.797 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -30.023 1.111 -8.518 31.228 hybrid contribution 2.024 0.747 0.716 2.273 sum -27.999 1.858 -7.802 29.125 Atomic orbital electron populations 1.21845 0.91076 1.04290 1.03389 1.22886 0.96262 0.79720 1.02756 1.86217 1.16249 1.32518 1.86610 1.20364 0.84553 0.90480 0.89165 1.21235 0.95210 0.96442 1.08304 1.21625 0.91994 0.99249 0.88516 1.20625 0.92759 0.96559 1.13926 1.17952 0.86550 0.81892 0.76639 1.90780 1.75442 1.30958 1.49355 1.49724 1.07574 1.14005 1.63710 1.21883 0.97137 0.81489 1.00383 1.22172 0.93145 0.97244 0.99984 0.88566 1.21675 0.94234 0.93312 1.02950 1.23600 0.95624 0.97718 1.00875 1.20384 0.86337 0.94284 0.91282 0.92966 1.42712 1.01969 1.87925 1.04711 1.19686 0.84368 1.39838 0.92590 0.90412 1.25529 1.01952 1.04258 0.95394 1.69828 1.32598 1.59831 0.99988 0.85132 0.80703 0.76420 0.77898 1.18823 1.22601 1.22237 1.22300 0.97345 0.94154 1.00378 0.91557 1.21382 0.79132 0.96933 1.01545 1.23851 0.89468 0.97433 0.88551 1.67484 1.06235 1.32950 1.20599 0.91654 0.91451 0.88323 0.91212 0.91613 0.81097 0.82592 0.87592 0.88731 0.91236 0.88640 0.91308 0.93526 0.79742 0.94270 0.92927 0.90105 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 71.98 0.74 -0.40 16 2 C 0.06 0.74 6.02 71.98 0.43 1.17 16 3 O -0.31 -5.27 10.10 -87.92 -0.89 -6.16 16 4 C 0.33 6.26 7.49 84.83 0.64 6.89 16 5 C -0.19 -3.20 10.02 22.43 0.22 -2.98 16 6 C 0.01 0.23 9.71 22.70 0.22 0.45 16 7 C -0.23 -5.23 5.82 -19.99 -0.12 -5.35 16 8 C 0.58 16.72 7.72 86.72 0.67 17.39 16 9 O -0.58 -21.81 16.94 -3.98 -0.07 -21.88 16 10 N -0.62 -15.89 3.43 -818.77 -2.81 -18.70 16 11 C 0.11 1.93 4.80 85.00 0.41 2.34 16 12 C -0.11 -2.12 2.77 -10.56 -0.03 -2.15 16 13 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 14 C -0.08 -1.69 6.72 31.13 0.21 -1.48 16 15 C -0.14 -4.09 6.74 32.80 0.22 -3.87 16 16 C 0.19 6.72 3.41 45.14 0.15 6.88 16 17 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 18 N -0.73 -35.86 5.10 -322.27 -1.64 -37.50 16 19 C -0.23 -12.67 9.96 84.03 0.84 -11.83 16 20 H 0.08 4.04 7.83 -2.92 -0.02 4.02 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 22 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 23 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C -0.12 -3.65 2.41 -10.61 -0.03 -3.67 16 28 H 0.07 2.23 7.92 -2.39 -0.02 2.21 16 29 C 0.13 4.01 6.83 85.07 0.58 4.59 16 30 C 0.16 3.07 9.54 85.03 0.81 3.89 16 31 N -0.55 -10.60 9.18 -307.82 -2.82 -13.43 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 0.86 8.10 -2.38 -0.02 0.84 16 36 H 0.07 0.86 8.10 -2.39 -0.02 0.85 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.16 2.89 7.89 -2.91 -0.02 2.87 16 39 H 0.11 1.34 7.17 -2.39 -0.02 1.32 16 40 H 0.10 1.38 6.48 -2.39 -0.02 1.36 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 45 H 0.37 19.88 7.67 -92.71 -0.71 19.17 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.05 1.94 8.05 -2.39 -0.02 1.92 16 48 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.20 2.87 3.77 -2.91 -0.01 2.86 16 Total: -1.00 -73.01 394.98 0.78 -72.23 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.26 Total: 28.92 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.44 Total: 7.79 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -6.99 Total: -129.20 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.96 Total: -28.04 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.01 0.78 -72.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026281305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.716 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds