Wall clock time and date at job start Wed Apr 1 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47071 * 2 1 4 4 C 1.35683 * 117.00136 * 179.97438 * 3 2 1 5 5 C 1.38895 * 119.62261 * 179.97438 * 4 3 2 6 6 C 1.39578 * 118.94775 * 179.97438 * 5 4 3 7 7 C 1.48151 * 120.89453 * 180.02562 * 6 5 4 8 8 O 1.21523 * 119.99925 * 342.30575 * 7 6 5 9 9 N 1.34774 * 120.00292 * 162.30688 * 7 6 5 10 10 C 1.47212 * 126.70518 * 173.91897 * 9 7 6 11 11 C 1.53776 * 106.38173 * 148.71672 * 10 9 7 12 12 H 1.08997 * 111.70572 * 257.23165 * 11 10 9 13 13 C 1.54320 * 109.06457 * 132.42725 * 11 10 9 14 14 C 1.55056 * 103.93899 * 222.03178 * 13 11 10 15 15 C 1.55062 * 102.10643 * 40.05361 * 14 13 11 16 16 H 1.09002 * 110.52808 * 78.56182 * 15 14 13 17 17 N 1.46500 * 110.65553 * 201.27485 * 15 14 13 18 18 C 1.36942 * 119.99621 * 271.55202 * 17 15 14 19 19 H 1.08001 * 120.00052 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99911 * 179.97438 * 18 17 15 21 21 N 1.31627 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47003 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47382 * 120.00000 * 22 20 18 25 25 H 1.48506 * 109.46929 * 240.00267 * 22 20 18 26 26 C 1.54319 * 103.93728 * 319.94688 * 15 14 13 27 27 H 1.09001 * 111.68890 * 262.79221 * 26 15 14 28 28 C 1.47215 * 126.70054 * 353.91299 * 9 7 6 29 29 C 1.39968 * 118.21245 * 0.28085 * 6 5 4 30 30 C 1.37980 * 119.13505 * 359.45286 * 29 6 5 31 31 N 1.31911 * 120.97519 * 0.56125 * 30 29 6 32 32 H 1.09000 * 109.46777 * 299.99351 * 1 2 3 33 33 H 1.08997 * 109.47392 * 60.00206 * 1 2 3 34 34 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47275 * 240.00504 * 2 1 3 36 36 H 1.08997 * 109.47392 * 119.99794 * 2 1 3 37 37 H 1.07997 * 120.52523 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.07559 * 29.48095 * 10 9 7 39 39 H 1.09005 * 110.06813 * 267.94570 * 10 9 7 40 40 H 1.09006 * 110.53640 * 340.64474 * 13 11 10 41 41 H 1.09001 * 110.53933 * 103.42000 * 13 11 10 42 42 H 1.09000 * 110.90154 * 281.86201 * 14 13 11 43 43 H 1.08989 * 110.90868 * 158.26007 * 14 13 11 44 44 H 0.97000 * 120.00192 * 91.55252 * 17 15 14 45 45 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.07201 * 92.05426 * 28 9 7 47 47 H 1.09006 * 110.07318 * 330.50988 * 28 9 7 48 48 H 1.08001 * 120.43158 * 179.72279 * 29 6 5 49 49 H 1.08003 * 119.51132 * 180.27242 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5252 0.0005 5 6 3.8738 2.8121 0.0000 6 6 5.2596 2.9787 0.0011 7 6 5.8631 4.3318 0.0012 8 8 5.1952 5.2950 -0.3195 9 7 7.1529 4.4944 0.3570 10 6 7.9332 5.7409 0.2913 11 6 8.9511 5.6765 1.4422 12 1 8.6476 6.2987 2.2841 13 6 10.3460 6.0577 0.9033 14 6 11.2988 5.0374 1.5782 15 6 10.4718 3.7273 1.5122 16 1 10.5226 3.2932 0.5137 17 7 10.9438 2.7673 2.5131 18 6 11.9533 1.8955 2.2030 19 1 12.4017 1.9159 1.2207 20 6 12.4009 0.9862 3.1515 21 7 11.8547 0.9616 4.3488 22 14 13.7784 -0.2026 2.7288 23 1 14.2178 0.0265 1.3289 24 1 14.9224 0.0177 3.6495 25 1 13.2895 -1.5976 2.8715 26 6 9.0319 4.1801 1.8332 27 1 8.7846 4.0224 2.8830 28 6 8.0564 3.4602 0.8872 29 6 6.0638 1.8332 -0.0033 30 6 5.4634 0.5909 0.0029 31 7 4.1497 0.4718 0.0019 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.2181 3.6703 -0.0004 38 1 7.2762 6.6009 0.4206 39 1 8.4529 5.8070 -0.6646 40 1 10.3790 5.9522 -0.1811 41 1 10.6048 7.0749 1.1975 42 1 11.5002 5.3183 2.6120 43 1 12.2268 4.9403 1.0151 44 1 10.5413 2.7492 3.3955 45 1 12.1672 0.3260 5.0115 46 1 8.6051 2.9890 0.0717 47 1 7.4861 2.7113 1.4370 48 1 7.1403 1.9205 -0.0071 49 1 6.0781 -0.2971 0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026350962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:41 Heat of formation + Delta-G solvation = -12.103712 kcal Electronic energy + Delta-G solvation = -30187.259493 eV Core-core repulsion = 26115.199336 eV Total energy + Delta-G solvation = -4072.060158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17312 -40.23393 -38.70359 -37.90058 -35.34439 -33.68397 -32.77253 -32.35496 -31.12956 -30.14638 -29.51145 -28.62141 -25.53761 -25.27170 -23.74197 -23.55105 -22.87963 -22.42403 -20.49971 -19.98758 -19.20544 -18.39590 -17.50400 -17.19331 -16.56175 -16.36839 -16.13160 -15.63267 -15.56198 -15.24299 -14.49910 -14.39687 -14.32145 -14.06473 -14.00131 -13.80219 -13.24603 -13.09779 -12.91904 -12.80312 -12.61991 -12.52181 -12.11691 -12.02854 -11.79129 -11.71193 -11.23296 -11.04504 -10.89165 -10.84853 -10.74811 -10.44132 -10.40182 -10.29084 -10.26319 -10.10737 -10.00289 -9.76964 -9.67956 -8.95612 -8.80874 -8.69715 -7.03011 -5.84533 -3.13713 0.53216 0.94803 2.53756 2.72044 2.98672 3.37849 3.44083 3.46144 3.62111 4.05267 4.19233 4.50013 4.56202 4.62277 4.71619 4.72341 4.77317 4.84449 4.86374 4.95505 5.10021 5.18919 5.35555 5.35600 5.39724 5.48388 5.50682 5.53206 5.55889 5.60609 5.65042 5.72227 5.75605 5.83225 5.88695 5.90374 5.98383 6.02864 6.08680 6.16534 6.24608 6.33759 6.43954 6.57950 6.72212 6.95709 7.00565 7.37736 7.58496 7.63829 7.94704 8.33761 9.45376 10.01880 10.35867 11.37828 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.002843 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.386433 B = 9846.136633 C =12189.433091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.306 6.306 4 C 0.317 3.683 5 C -0.136 4.136 6 C -0.049 4.049 7 C 0.577 3.423 8 O -0.535 6.535 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.100 4.100 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.143 4.143 15 C 0.184 3.816 16 H 0.057 0.943 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.108 4.108 27 H 0.092 0.908 28 C 0.097 3.903 29 C -0.191 4.191 30 C 0.140 3.860 31 N -0.527 5.527 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.151 0.849 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.161 0.839 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 3.312 -9.194 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.214 6.214 4 C 0.138 3.862 5 C -0.157 4.157 6 C -0.059 4.059 7 C 0.365 3.635 8 O -0.413 6.413 9 N -0.339 5.339 10 C -0.011 4.011 11 C -0.119 4.119 12 H 0.105 0.895 13 C -0.155 4.155 14 C -0.184 4.184 15 C 0.073 3.927 16 H 0.075 0.925 17 N -0.361 5.361 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.128 4.128 27 H 0.110 0.890 28 C -0.025 4.025 29 C -0.211 4.211 30 C -0.015 4.015 31 N -0.251 5.251 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.169 0.831 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.178 0.822 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.687 3.050 -9.473 19.429 hybrid contribution 1.180 -0.198 0.243 1.221 sum -15.507 2.851 -9.230 18.270 Atomic orbital electron populations 1.21824 0.92995 1.02907 1.03353 1.22625 0.94735 0.80914 1.02654 1.86239 1.16521 1.30819 1.87793 1.19591 0.84237 0.89432 0.92892 1.21052 0.94362 0.96366 1.03944 1.20003 0.93155 0.93711 0.99071 1.17711 0.80209 0.87873 0.77682 1.90778 1.60479 1.40945 1.49052 1.48474 1.09735 1.12776 1.62901 1.22290 0.93030 0.86932 0.98863 1.22583 0.95219 0.96998 0.97138 0.89500 1.22493 0.93813 0.99328 0.99825 1.23300 0.98172 0.96523 1.00394 1.21241 0.88491 0.89260 0.93681 0.92475 1.42452 1.42309 1.38733 1.12565 1.19257 1.10127 1.10074 0.97677 0.91110 1.24737 1.00039 0.99975 0.96021 1.69665 1.44558 1.39313 1.04376 0.86162 0.81840 0.81001 0.77434 1.20550 1.21896 1.21859 1.22946 0.96856 0.93283 0.99687 0.88960 1.22749 0.91435 0.91013 0.97262 1.22915 1.02967 0.92482 1.02732 1.22485 0.88775 0.97541 0.92693 1.67214 1.06996 1.33251 1.17685 0.91604 0.91646 0.90259 0.91548 0.91453 0.83099 0.90359 0.90895 0.91603 0.92085 0.91499 0.92064 0.78166 0.93507 0.90124 0.89532 0.82192 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.07 0.60 6.03 37.16 0.22 0.83 16 3 O -0.31 -3.65 10.11 -18.75 -0.19 -3.84 16 4 C 0.32 4.08 7.49 -17.16 -0.13 3.95 16 5 C -0.14 -1.77 9.61 -38.84 -0.37 -2.15 16 6 C -0.05 -0.64 5.80 -104.68 -0.61 -1.25 16 7 C 0.58 8.42 7.76 -12.19 -0.09 8.32 16 8 O -0.53 -9.20 16.78 5.35 0.09 -9.11 16 9 N -0.61 -7.99 3.32 -172.58 -0.57 -8.56 16 10 C 0.11 1.34 6.57 -3.25 -0.02 1.32 16 11 C -0.10 -1.21 3.91 -88.54 -0.35 -1.56 16 12 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.12 -1.39 6.35 -24.95 -0.16 -1.55 16 14 C -0.14 -2.23 6.60 -24.55 -0.16 -2.40 16 15 C 0.18 3.15 3.02 -66.15 -0.20 2.95 16 16 H 0.06 0.98 7.15 -51.93 -0.37 0.61 16 17 N -0.72 -16.21 5.23 -51.70 -0.27 -16.48 16 18 C -0.24 -6.15 9.97 -15.06 -0.15 -6.30 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -26.72 13.06 55.49 0.72 -25.99 16 22 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 C -0.11 -1.53 3.60 -88.54 -0.32 -1.85 16 27 H 0.09 1.42 7.80 -51.93 -0.40 1.02 16 28 C 0.10 1.25 4.59 -3.25 -0.01 1.24 16 29 C -0.19 -2.21 8.16 -39.03 -0.32 -2.53 16 30 C 0.14 1.57 11.17 -17.61 -0.20 1.37 16 31 N -0.53 -6.58 9.18 -13.38 -0.12 -6.70 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.15 1.92 7.84 -52.49 -0.41 1.51 16 38 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 39 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 40 H 0.07 0.73 7.19 -51.93 -0.37 0.36 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.99 8.14 -51.94 -0.42 0.56 16 44 H 0.38 9.33 7.59 -40.82 -0.31 9.02 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.08 0.99 6.45 -51.93 -0.33 0.66 16 47 H 0.09 1.10 5.98 -51.93 -0.31 0.79 16 48 H 0.16 1.71 4.39 -52.49 -0.23 1.48 16 49 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -30.84 391.72 -9.34 -40.17 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.29 Total: 8.95 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.58 Total: -0.65 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.24 Total: -57.74 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.10 Total: -12.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.84 -9.34 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.069 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds