Wall clock time and date at job start Wed Apr 1 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47071 * 2 1 4 4 C 1.35683 * 117.00136 * 179.97438 * 3 2 1 5 5 C 1.38895 * 119.62261 * 179.97438 * 4 3 2 6 6 C 1.39578 * 118.94775 * 179.97438 * 5 4 3 7 7 C 1.48151 * 120.89453 * 180.02562 * 6 5 4 8 8 O 1.21523 * 119.99925 * 342.30575 * 7 6 5 9 9 N 1.34774 * 120.00292 * 162.30688 * 7 6 5 10 10 C 1.47212 * 126.70518 * 173.91897 * 9 7 6 11 11 C 1.53776 * 106.38173 * 148.71672 * 10 9 7 12 12 H 1.08997 * 111.70572 * 257.23165 * 11 10 9 13 13 C 1.54320 * 109.06457 * 132.42725 * 11 10 9 14 14 C 1.55056 * 103.93899 * 222.03178 * 13 11 10 15 15 C 1.55062 * 102.10643 * 40.05361 * 14 13 11 16 16 H 1.09002 * 110.52808 * 78.56182 * 15 14 13 17 17 N 1.46500 * 110.65553 * 201.27485 * 15 14 13 18 18 C 1.36942 * 119.99621 * 271.55202 * 17 15 14 19 19 H 1.08001 * 120.00052 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99911 * 179.97438 * 18 17 15 21 21 N 1.31627 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47003 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47382 * 120.00000 * 22 20 18 25 25 H 1.48506 * 109.46929 * 240.00267 * 22 20 18 26 26 C 1.54319 * 103.93728 * 319.94688 * 15 14 13 27 27 H 1.09001 * 111.68890 * 262.79221 * 26 15 14 28 28 C 1.47215 * 126.70054 * 353.91299 * 9 7 6 29 29 C 1.39968 * 118.21245 * 0.28085 * 6 5 4 30 30 C 1.37980 * 119.13505 * 359.45286 * 29 6 5 31 31 N 1.31911 * 120.97519 * 0.56125 * 30 29 6 32 32 H 1.09000 * 109.46777 * 299.99351 * 1 2 3 33 33 H 1.08997 * 109.47392 * 60.00206 * 1 2 3 34 34 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47275 * 240.00504 * 2 1 3 36 36 H 1.08997 * 109.47392 * 119.99794 * 2 1 3 37 37 H 1.07997 * 120.52523 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.07559 * 29.48095 * 10 9 7 39 39 H 1.09005 * 110.06813 * 267.94570 * 10 9 7 40 40 H 1.09006 * 110.53640 * 340.64474 * 13 11 10 41 41 H 1.09001 * 110.53933 * 103.42000 * 13 11 10 42 42 H 1.09000 * 110.90154 * 281.86201 * 14 13 11 43 43 H 1.08989 * 110.90868 * 158.26007 * 14 13 11 44 44 H 0.97000 * 120.00192 * 91.55252 * 17 15 14 45 45 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.07201 * 92.05426 * 28 9 7 47 47 H 1.09006 * 110.07318 * 330.50988 * 28 9 7 48 48 H 1.08001 * 120.43158 * 179.72279 * 29 6 5 49 49 H 1.08003 * 119.51132 * 180.27242 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5252 0.0005 5 6 3.8738 2.8121 0.0000 6 6 5.2596 2.9787 0.0011 7 6 5.8631 4.3318 0.0012 8 8 5.1952 5.2950 -0.3195 9 7 7.1529 4.4944 0.3570 10 6 7.9332 5.7409 0.2913 11 6 8.9511 5.6765 1.4422 12 1 8.6476 6.2987 2.2841 13 6 10.3460 6.0577 0.9033 14 6 11.2988 5.0374 1.5782 15 6 10.4718 3.7273 1.5122 16 1 10.5226 3.2932 0.5137 17 7 10.9438 2.7673 2.5131 18 6 11.9533 1.8955 2.2030 19 1 12.4017 1.9159 1.2207 20 6 12.4009 0.9862 3.1515 21 7 11.8547 0.9616 4.3488 22 14 13.7784 -0.2026 2.7288 23 1 14.2178 0.0265 1.3289 24 1 14.9224 0.0177 3.6495 25 1 13.2895 -1.5976 2.8715 26 6 9.0319 4.1801 1.8332 27 1 8.7846 4.0224 2.8830 28 6 8.0564 3.4602 0.8872 29 6 6.0638 1.8332 -0.0033 30 6 5.4634 0.5909 0.0029 31 7 4.1497 0.4718 0.0019 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.2181 3.6703 -0.0004 38 1 7.2762 6.6009 0.4206 39 1 8.4529 5.8070 -0.6646 40 1 10.3790 5.9522 -0.1811 41 1 10.6048 7.0749 1.1975 42 1 11.5002 5.3183 2.6120 43 1 12.2268 4.9403 1.0151 44 1 10.5413 2.7492 3.3955 45 1 12.1672 0.3260 5.0115 46 1 8.6051 2.9890 0.0717 47 1 7.4861 2.7113 1.4370 48 1 7.1403 1.9205 -0.0071 49 1 6.0781 -0.2971 0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026350962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:40 Heat of formation + Delta-G solvation = -31.819629 kcal Electronic energy + Delta-G solvation = -30188.114440 eV Core-core repulsion = 26115.199336 eV Total energy + Delta-G solvation = -4072.915104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.18296 -41.26856 -39.81926 -38.86791 -36.72599 -35.19226 -33.86008 -33.13281 -32.64469 -31.07939 -30.72772 -29.89302 -26.81266 -26.49081 -24.81577 -24.61995 -24.22658 -23.29982 -21.67793 -21.03043 -20.42718 -19.38269 -19.09189 -18.40128 -17.54033 -17.34527 -17.22114 -16.79100 -16.67030 -16.46872 -15.90175 -15.64688 -15.34035 -15.11167 -14.97349 -14.88630 -14.73938 -14.49478 -13.91438 -13.73472 -13.47297 -13.38185 -13.29420 -13.13692 -13.05751 -12.85714 -12.56743 -12.50166 -12.32172 -12.00980 -11.92748 -11.75759 -11.64293 -11.55623 -11.48628 -11.42043 -11.34065 -11.11109 -10.85553 -10.69191 -9.87351 -9.63802 -8.90474 -7.88125 -5.14844 -0.47179 0.01100 1.51270 1.52739 1.53955 1.61326 1.66718 2.05087 2.61295 2.65342 3.08583 3.23976 3.39577 3.52633 3.56873 3.74074 3.79901 3.88983 4.00671 4.07633 4.08326 4.15477 4.21634 4.34568 4.43771 4.44642 4.51022 4.55745 4.61300 4.64895 4.67030 4.74535 4.80672 4.82581 4.88837 4.92303 4.93995 5.06681 5.08021 5.13658 5.18971 5.26041 5.30089 5.43336 5.48096 5.57560 5.66640 6.12766 6.27974 6.34601 6.65179 6.83657 7.41358 8.18611 8.39827 9.35438 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.002843 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.386433 B = 9846.136633 C =12189.433091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.310 3.690 5 C -0.147 4.147 6 C -0.058 4.058 7 C 0.576 3.424 8 O -0.567 6.567 9 N -0.602 5.602 10 C 0.110 3.890 11 C -0.091 4.091 12 H 0.093 0.907 13 C -0.102 4.102 14 C -0.141 4.141 15 C 0.178 3.822 16 H 0.063 0.937 17 N -0.732 5.732 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.962 3.038 23 H -0.265 1.265 24 H -0.301 1.301 25 H -0.297 1.297 26 C -0.103 4.103 27 H 0.077 0.923 28 C 0.102 3.898 29 C -0.186 4.186 30 C 0.142 3.858 31 N -0.533 5.533 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.372 0.628 45 H 0.248 0.752 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.171 0.829 49 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 3.364 -10.800 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 O -0.225 6.225 4 C 0.132 3.868 5 C -0.169 4.169 6 C -0.069 4.069 7 C 0.365 3.635 8 O -0.447 6.447 9 N -0.333 5.333 10 C -0.011 4.011 11 C -0.110 4.110 12 H 0.112 0.888 13 C -0.140 4.140 14 C -0.181 4.181 15 C 0.069 3.931 16 H 0.080 0.920 17 N -0.371 5.371 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.229 1.229 25 H -0.224 1.224 26 C -0.123 4.123 27 H 0.096 0.904 28 C -0.020 4.020 29 C -0.206 4.206 30 C -0.014 4.014 31 N -0.258 5.258 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.188 0.812 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -16.646 3.134 -11.129 20.267 hybrid contribution 1.149 -0.184 0.712 1.364 sum -15.497 2.950 -10.417 18.904 Atomic orbital electron populations 1.21844 0.91006 1.04338 1.03335 1.22853 0.96299 0.79730 1.02547 1.86239 1.16117 1.32478 1.87630 1.19687 0.84751 0.89434 0.92949 1.21074 0.94525 0.96547 1.04729 1.19985 0.93359 0.93585 0.99944 1.17896 0.80331 0.88020 0.77250 1.90757 1.61201 1.41996 1.50722 1.48476 1.09405 1.13315 1.62145 1.22398 0.92824 0.86436 0.99458 1.22538 0.95587 0.95394 0.97494 0.88840 1.22427 0.92044 0.99103 1.00459 1.23155 0.98546 0.96713 0.99728 1.21486 0.90312 0.88818 0.92447 0.91959 1.42642 1.41827 1.39478 1.13129 1.19620 1.09619 1.09245 0.97424 0.90423 1.25429 1.02720 1.02309 0.96259 1.69808 1.46442 1.40466 1.05366 0.85223 0.79089 0.78781 0.77598 1.18927 1.22873 1.22402 1.22786 0.95250 0.95054 0.99256 0.90416 1.22719 0.91147 0.90782 0.97334 1.23015 1.03266 0.92128 1.02175 1.22982 0.88598 0.98384 0.91404 1.67289 1.07561 1.33111 1.17847 0.91709 0.91545 0.88072 0.91460 0.91696 0.83539 0.90403 0.89223 0.89850 0.90201 0.93356 0.92633 0.79580 0.94330 0.88929 0.89430 0.81178 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.06 1.06 6.03 71.98 0.43 1.50 16 3 O -0.32 -7.51 10.11 -90.02 -0.91 -8.42 16 4 C 0.31 7.89 7.49 84.80 0.63 8.53 16 5 C -0.15 -3.86 9.61 22.75 0.22 -3.64 16 6 C -0.06 -1.50 5.80 -19.90 -0.12 -1.61 16 7 C 0.58 16.33 7.76 86.88 0.67 17.00 16 8 O -0.57 -19.33 16.78 -3.79 -0.06 -19.39 16 9 N -0.60 -14.82 3.32 -818.20 -2.72 -17.53 16 10 C 0.11 2.38 6.57 86.50 0.57 2.95 16 11 C -0.09 -1.98 3.91 -9.44 -0.04 -2.02 16 12 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.10 -2.13 6.35 31.75 0.20 -1.93 16 14 C -0.14 -4.17 6.60 32.00 0.21 -3.95 16 15 C 0.18 5.84 3.02 46.14 0.14 5.97 16 16 H 0.06 2.00 7.15 -2.39 -0.02 1.98 16 17 N -0.73 -32.71 5.23 -317.49 -1.66 -34.37 16 18 C -0.23 -11.47 9.97 84.03 0.84 -10.63 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 20 C -0.08 -4.05 5.50 84.86 0.47 -3.59 16 21 N -0.97 -56.57 13.06 21.65 0.28 -56.29 16 22 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 26 C -0.10 -2.78 3.60 -9.44 -0.03 -2.82 16 27 H 0.08 2.36 7.80 -2.39 -0.02 2.35 16 28 C 0.10 2.43 4.59 86.51 0.40 2.83 16 29 C -0.19 -4.03 8.16 22.63 0.18 -3.85 16 30 C 0.14 2.92 11.17 84.62 0.94 3.86 16 31 N -0.53 -12.77 9.18 -309.14 -2.84 -15.60 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.15 3.87 7.84 -2.91 -0.02 3.85 16 38 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 39 H 0.09 1.68 7.13 -2.38 -0.02 1.66 16 40 H 0.08 1.50 7.19 -2.38 -0.02 1.48 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.37 18.32 7.59 -92.71 -0.70 17.62 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.09 2.03 6.45 -2.39 -0.02 2.02 16 47 H 0.09 2.10 5.98 -2.38 -0.01 2.09 16 48 H 0.17 3.28 4.39 -2.91 -0.01 3.27 16 49 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.55 391.72 0.86 -65.69 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.27 Total: 32.43 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.47 Total: 7.57 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.93 Total: -123.79 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.97 Total: -27.81 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -66.55 0.86 -65.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.867 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds