Wall clock time and date at job start Wed Apr 1 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46728 * 2 1 4 4 C 1.35683 * 116.99889 * 179.97438 * 3 2 1 5 5 C 1.38891 * 119.62252 * 180.02562 * 4 3 2 6 6 C 1.39574 * 118.94573 * 179.97438 * 5 4 3 7 7 C 1.48165 * 120.88880 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99788 * 196.48261 * 7 6 5 9 9 N 1.34775 * 120.00315 * 16.47829 * 7 6 5 10 10 C 1.49626 * 126.06960 * 5.67938 * 9 7 6 11 11 C 1.51760 * 102.37889 * 154.30162 * 10 9 7 12 12 H 1.09003 * 111.73845 * 288.24649 * 11 10 9 13 13 C 1.51568 * 123.23464 * 151.77300 * 11 10 9 14 14 C 1.56336 * 101.81013 * 208.16830 * 13 11 10 15 15 C 1.55995 * 105.77086 * 25.44176 * 14 13 11 16 16 H 1.09003 * 110.52713 * 125.58391 * 15 14 13 17 17 N 1.46508 * 110.64625 * 248.27536 * 15 14 13 18 18 C 1.36940 * 119.99874 * 269.63553 * 17 15 14 19 19 H 1.07995 * 120.00126 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99430 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00555 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99535 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47218 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47317 * 119.99900 * 22 20 18 25 25 H 1.48510 * 109.46882 * 239.99892 * 22 20 18 26 26 C 1.49699 * 103.98817 * 6.95751 * 15 14 13 27 27 H 1.09010 * 108.54971 * 76.80223 * 26 15 14 28 28 C 1.49284 * 126.07603 * 185.98485 * 9 7 6 29 29 C 1.39956 * 118.21740 * 359.97438 * 6 5 4 30 30 C 1.37978 * 119.13464 * 0.02562 * 29 6 5 31 31 N 1.31909 * 120.97906 * 359.74082 * 30 29 6 32 32 H 1.08990 * 109.47491 * 59.99799 * 1 2 3 33 33 H 1.09002 * 109.46272 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47189 * 299.99123 * 1 2 3 35 35 H 1.09003 * 109.47189 * 240.00877 * 2 1 3 36 36 H 1.08999 * 109.47505 * 120.00009 * 2 1 3 37 37 H 1.08000 * 120.52238 * 359.96150 * 5 4 3 38 38 H 1.09003 * 110.80500 * 272.63315 * 10 9 7 39 39 H 1.09003 * 110.80566 * 36.13354 * 10 9 7 40 40 H 1.08998 * 110.95945 * 90.04163 * 13 11 10 41 41 H 1.08996 * 110.96241 * 326.30044 * 13 11 10 42 42 H 1.08998 * 110.18996 * 266.36245 * 14 13 11 43 43 H 1.09001 * 110.18731 * 144.51863 * 14 13 11 44 44 H 0.97004 * 119.99675 * 89.63425 * 17 15 14 45 45 H 0.96997 * 120.00256 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.39783 * 292.38466 * 28 9 7 47 47 H 1.09006 * 110.39018 * 54.78317 * 28 9 7 48 48 H 1.08006 * 120.43489 * 179.97438 * 29 6 5 49 49 H 1.08001 * 119.50887 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8738 2.8122 0.0011 6 6 5.2595 2.9788 0.0022 7 6 5.8630 4.3319 0.0023 8 8 7.0323 4.4757 -0.2954 9 7 5.1150 5.4034 0.3324 10 6 3.7053 5.3732 0.8331 11 6 3.6138 6.6641 1.6256 12 1 4.1817 6.6088 2.5544 13 6 2.3199 7.4288 1.8214 14 6 2.8368 8.8946 1.9899 15 6 4.2091 8.9479 1.2500 16 1 4.2150 9.7511 0.5131 17 7 5.3052 9.1220 2.2064 18 6 5.7227 10.3808 2.5476 19 1 5.2442 11.2452 2.1114 20 6 6.7608 10.5457 3.4542 21 7 7.3436 9.4924 3.9862 22 14 7.3299 12.2629 3.9202 23 1 6.5182 13.2688 3.1890 24 1 7.1631 12.4598 5.3826 25 1 8.7612 12.4251 3.5589 26 6 4.3083 7.6154 0.5750 27 1 3.6675 7.6249 -0.3068 28 6 5.5435 6.8314 0.2574 29 6 6.0637 1.8333 0.0032 30 6 5.4633 0.5910 0.0026 31 7 4.1497 0.4718 0.0061 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3634 0.5137 0.8901 35 1 1.8934 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 3.2180 3.6703 0.0005 38 1 2.9993 5.3753 0.0026 39 1 3.5423 4.5104 1.4790 40 1 1.8005 7.0929 2.7189 41 1 1.6781 7.3400 0.9449 42 1 2.9697 9.1275 3.0464 43 1 2.1365 9.5950 1.5348 44 1 5.7351 8.3456 2.5980 45 1 8.0693 9.6076 4.6194 46 1 6.3216 7.0337 0.9934 47 1 5.8971 7.0696 -0.7458 48 1 7.1402 1.9206 0.0037 49 1 6.0781 -0.2970 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026350963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:46 Heat of formation + Delta-G solvation = 8.885463 kcal Electronic energy + Delta-G solvation = -30471.298331 eV Core-core repulsion = 26400.148332 eV Total energy + Delta-G solvation = -4071.149999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22541 -40.35283 -38.86983 -37.87297 -35.39909 -33.43189 -32.93087 -32.37805 -30.88162 -30.28290 -29.35016 -28.56471 -25.72475 -25.31993 -23.62534 -23.51589 -23.23087 -22.32917 -20.35594 -19.95937 -18.91089 -18.19239 -17.56410 -17.06958 -16.61954 -16.55353 -16.15600 -16.04498 -15.21406 -14.90122 -14.56407 -14.36786 -14.34095 -14.22169 -13.90626 -13.68482 -13.55591 -13.00684 -12.85903 -12.67703 -12.62297 -12.57026 -12.31166 -11.87886 -11.80540 -11.47917 -11.19175 -11.09135 -10.99318 -10.86207 -10.71839 -10.52057 -10.31095 -10.29242 -10.15033 -10.07008 -9.70948 -9.66633 -9.60135 -8.93504 -8.80950 -8.60520 -6.99044 -5.78364 -3.07752 0.50111 0.88535 2.62393 2.75782 2.86152 3.42573 3.48318 3.50634 3.59727 3.95146 4.09635 4.32477 4.57773 4.64029 4.66585 4.70425 4.75756 4.87593 4.92110 5.00903 5.05210 5.23098 5.29887 5.32154 5.34481 5.43706 5.47990 5.50595 5.56204 5.60313 5.68368 5.73763 5.80670 5.84251 5.90981 5.95571 6.03566 6.13341 6.20891 6.25449 6.34416 6.40909 6.50779 6.63145 6.78325 6.93670 7.02056 7.46076 7.50329 7.70043 8.07551 8.39581 9.51188 10.07272 10.41730 11.43925 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.002551 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.700105 B =10974.029276 C =12122.071860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.306 6.306 4 C 0.319 3.681 5 C -0.176 4.176 6 C -0.043 4.043 7 C 0.570 3.430 8 O -0.526 6.526 9 N -0.613 5.613 10 C 0.108 3.892 11 C -0.127 4.127 12 H 0.096 0.904 13 C -0.098 4.098 14 C -0.145 4.145 15 C 0.197 3.803 16 H 0.058 0.942 17 N -0.718 5.718 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.121 4.121 27 H 0.069 0.931 28 C 0.134 3.866 29 C -0.156 4.156 30 C 0.135 3.865 31 N -0.530 5.530 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.150 0.850 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 -19.017 -9.044 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.140 3.860 5 C -0.197 4.197 6 C -0.053 4.053 7 C 0.358 3.642 8 O -0.403 6.403 9 N -0.347 5.347 10 C -0.014 4.014 11 C -0.146 4.146 12 H 0.114 0.886 13 C -0.137 4.137 14 C -0.186 4.186 15 C 0.085 3.915 16 H 0.076 0.924 17 N -0.359 5.359 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.141 4.141 27 H 0.087 0.913 28 C 0.013 3.987 29 C -0.177 4.177 30 C -0.020 4.020 31 N -0.255 5.255 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.168 0.832 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.436 -19.435 -9.211 25.359 hybrid contribution 0.868 1.169 0.501 1.539 sum -12.568 -18.266 -8.711 23.822 Atomic orbital electron populations 1.21829 0.92920 1.02917 1.03468 1.22617 0.94797 0.80926 1.02516 1.86243 1.16504 1.30796 1.87761 1.19636 0.84190 0.89516 0.92703 1.21978 0.95195 0.97128 1.05394 1.20177 0.92720 0.94408 0.98027 1.17705 0.85400 0.82957 0.78148 1.90812 1.15252 1.85396 1.48818 1.49720 1.14268 1.06597 1.64082 1.22221 0.82549 0.99163 0.97450 1.22735 0.99315 0.93212 0.99335 0.88602 1.21832 0.94839 0.96058 1.00945 1.23864 0.98091 0.93933 1.02723 1.20018 0.88351 0.92131 0.90950 0.92438 1.42438 1.37332 1.06071 1.50045 1.19283 1.12902 0.84995 1.19992 0.91047 1.24744 0.99088 0.97015 0.99975 1.69661 1.26923 1.27585 1.33705 0.86150 0.78327 0.83997 0.77879 1.20567 1.21953 1.21904 1.22097 0.96215 0.97373 0.98437 0.91283 1.21004 0.97681 0.77442 1.02545 1.22143 1.02243 0.91687 1.01658 1.22395 0.88863 0.97216 0.93502 1.67186 1.06910 1.33395 1.17992 0.91590 0.90297 0.91505 0.91639 0.91551 0.82023 0.90442 0.89868 0.91959 0.91904 0.90543 0.92769 0.78118 0.93522 0.89343 0.90989 0.83198 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.07 0.53 6.03 37.16 0.22 0.76 16 3 O -0.31 -3.24 10.11 -18.75 -0.19 -3.43 16 4 C 0.32 3.67 7.49 -17.16 -0.13 3.54 16 5 C -0.18 -2.03 8.20 -38.84 -0.32 -2.35 16 6 C -0.04 -0.55 5.83 -104.68 -0.61 -1.16 16 7 C 0.57 9.08 7.78 -12.18 -0.09 8.98 16 8 O -0.53 -10.17 16.93 5.35 0.09 -10.08 16 9 N -0.61 -9.12 3.42 -172.42 -0.59 -9.71 16 10 C 0.11 1.28 4.63 -2.93 -0.01 1.26 16 11 C -0.13 -1.74 3.09 -89.33 -0.28 -2.02 16 12 H 0.10 1.59 7.88 -51.93 -0.41 1.18 16 13 C -0.10 -1.23 6.59 -25.66 -0.17 -1.40 16 14 C -0.15 -2.28 6.74 -23.34 -0.16 -2.44 16 15 C 0.20 3.58 3.46 -67.96 -0.24 3.34 16 16 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 17 N -0.72 -16.88 4.86 -53.45 -0.26 -17.14 16 18 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.12 -1.85 2.29 -91.23 -0.21 -2.06 16 27 H 0.07 0.92 7.93 -51.92 -0.41 0.51 16 28 C 0.13 2.23 6.68 -4.12 -0.03 2.20 16 29 C -0.16 -1.78 9.67 -39.03 -0.38 -2.15 16 30 C 0.14 1.32 11.17 -17.61 -0.20 1.12 16 31 N -0.53 -5.89 9.18 -13.38 -0.12 -6.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.52 8.11 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.16 1.66 4.10 -52.49 -0.21 1.44 16 38 H 0.08 0.76 7.25 -51.93 -0.38 0.39 16 39 H 0.08 0.91 6.42 -51.93 -0.33 0.58 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.38 9.75 6.73 -40.82 -0.27 9.48 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 1.78 7.21 -51.93 -0.37 1.41 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.15 1.62 7.83 -52.48 -0.41 1.21 16 49 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -32.17 392.65 -9.32 -41.49 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.41 Total: 8.75 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.45 Total: 0.12 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.25 Total: -59.87 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.10 Total: -13.51 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.17 -9.32 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.373 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds