Wall clock time and date at job start Wed Apr 1 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46728 * 2 1 4 4 C 1.35683 * 116.99889 * 179.97438 * 3 2 1 5 5 C 1.38891 * 119.62252 * 180.02562 * 4 3 2 6 6 C 1.39574 * 118.94573 * 179.97438 * 5 4 3 7 7 C 1.48165 * 120.88880 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99788 * 196.48261 * 7 6 5 9 9 N 1.34775 * 120.00315 * 16.47829 * 7 6 5 10 10 C 1.49626 * 126.06960 * 5.67938 * 9 7 6 11 11 C 1.51760 * 102.37889 * 154.30162 * 10 9 7 12 12 H 1.09003 * 111.73845 * 288.24649 * 11 10 9 13 13 C 1.51568 * 123.23464 * 151.77300 * 11 10 9 14 14 C 1.56336 * 101.81013 * 208.16830 * 13 11 10 15 15 C 1.55995 * 105.77086 * 25.44176 * 14 13 11 16 16 H 1.09003 * 110.52713 * 125.58391 * 15 14 13 17 17 N 1.46508 * 110.64625 * 248.27536 * 15 14 13 18 18 C 1.36940 * 119.99874 * 269.63553 * 17 15 14 19 19 H 1.07995 * 120.00126 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99430 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00555 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99535 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47218 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47317 * 119.99900 * 22 20 18 25 25 H 1.48510 * 109.46882 * 239.99892 * 22 20 18 26 26 C 1.49699 * 103.98817 * 6.95751 * 15 14 13 27 27 H 1.09010 * 108.54971 * 76.80223 * 26 15 14 28 28 C 1.49284 * 126.07603 * 185.98485 * 9 7 6 29 29 C 1.39956 * 118.21740 * 359.97438 * 6 5 4 30 30 C 1.37978 * 119.13464 * 0.02562 * 29 6 5 31 31 N 1.31909 * 120.97906 * 359.74082 * 30 29 6 32 32 H 1.08990 * 109.47491 * 59.99799 * 1 2 3 33 33 H 1.09002 * 109.46272 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47189 * 299.99123 * 1 2 3 35 35 H 1.09003 * 109.47189 * 240.00877 * 2 1 3 36 36 H 1.08999 * 109.47505 * 120.00009 * 2 1 3 37 37 H 1.08000 * 120.52238 * 359.96150 * 5 4 3 38 38 H 1.09003 * 110.80500 * 272.63315 * 10 9 7 39 39 H 1.09003 * 110.80566 * 36.13354 * 10 9 7 40 40 H 1.08998 * 110.95945 * 90.04163 * 13 11 10 41 41 H 1.08996 * 110.96241 * 326.30044 * 13 11 10 42 42 H 1.08998 * 110.18996 * 266.36245 * 14 13 11 43 43 H 1.09001 * 110.18731 * 144.51863 * 14 13 11 44 44 H 0.97004 * 119.99675 * 89.63425 * 17 15 14 45 45 H 0.96997 * 120.00256 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.39783 * 292.38466 * 28 9 7 47 47 H 1.09006 * 110.39018 * 54.78317 * 28 9 7 48 48 H 1.08006 * 120.43489 * 179.97438 * 29 6 5 49 49 H 1.08001 * 119.50887 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8738 2.8122 0.0011 6 6 5.2595 2.9788 0.0022 7 6 5.8630 4.3319 0.0023 8 8 7.0323 4.4757 -0.2954 9 7 5.1150 5.4034 0.3324 10 6 3.7053 5.3732 0.8331 11 6 3.6138 6.6641 1.6256 12 1 4.1817 6.6088 2.5544 13 6 2.3199 7.4288 1.8214 14 6 2.8368 8.8946 1.9899 15 6 4.2091 8.9479 1.2500 16 1 4.2150 9.7511 0.5131 17 7 5.3052 9.1220 2.2064 18 6 5.7227 10.3808 2.5476 19 1 5.2442 11.2452 2.1114 20 6 6.7608 10.5457 3.4542 21 7 7.3436 9.4924 3.9862 22 14 7.3299 12.2629 3.9202 23 1 6.5182 13.2688 3.1890 24 1 7.1631 12.4598 5.3826 25 1 8.7612 12.4251 3.5589 26 6 4.3083 7.6154 0.5750 27 1 3.6675 7.6249 -0.3068 28 6 5.5435 6.8314 0.2574 29 6 6.0637 1.8333 0.0032 30 6 5.4633 0.5910 0.0026 31 7 4.1497 0.4718 0.0061 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3634 0.5137 0.8901 35 1 1.8934 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 3.2180 3.6703 0.0005 38 1 2.9993 5.3753 0.0026 39 1 3.5423 4.5104 1.4790 40 1 1.8005 7.0929 2.7189 41 1 1.6781 7.3400 0.9449 42 1 2.9697 9.1275 3.0464 43 1 2.1365 9.5950 1.5348 44 1 5.7351 8.3456 2.5980 45 1 8.0693 9.6076 4.6194 46 1 6.3216 7.0337 0.9934 47 1 5.8971 7.0696 -0.7458 48 1 7.1402 1.9206 0.0037 49 1 6.0781 -0.2970 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026350963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:45 Heat of formation + Delta-G solvation = -12.997834 kcal Electronic energy + Delta-G solvation = -30472.247262 eV Core-core repulsion = 26400.148332 eV Total energy + Delta-G solvation = -4072.098930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.24426 -41.40704 -40.00834 -38.78695 -36.84098 -35.14197 -33.93137 -33.00152 -32.60026 -31.16414 -30.50220 -29.96606 -27.14493 -26.32727 -25.20513 -24.43288 -24.33024 -23.26322 -21.39387 -21.04872 -20.29823 -19.41661 -19.18439 -18.13223 -17.61492 -17.44005 -17.22143 -17.00119 -16.66047 -16.28381 -15.95854 -15.69028 -15.34163 -15.16213 -15.07647 -14.87275 -14.67073 -14.50802 -13.90592 -13.77360 -13.49837 -13.34317 -13.29378 -13.10138 -13.03729 -12.84163 -12.63387 -12.44619 -12.28190 -12.18439 -12.06753 -11.89349 -11.70087 -11.52540 -11.42413 -11.38331 -11.11452 -10.94705 -10.87298 -10.68439 -9.88761 -9.59711 -8.97158 -7.92628 -5.19920 -0.44929 0.04981 1.46415 1.47215 1.56571 1.56794 1.66214 1.96062 2.57008 2.69182 2.93332 3.16933 3.31281 3.41792 3.72187 3.77083 3.86201 3.95326 4.03488 4.04920 4.13856 4.19159 4.20615 4.22845 4.36668 4.45243 4.50227 4.53042 4.58554 4.63350 4.68861 4.70710 4.85096 4.86283 4.88436 4.93185 5.00676 5.06810 5.07520 5.16445 5.22170 5.24299 5.31846 5.38314 5.45473 5.54941 5.69755 6.17277 6.27509 6.30088 6.67754 6.84524 7.35692 8.13949 8.34801 9.31066 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.002551 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.700105 B =10974.029276 C =12122.071860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.311 6.311 4 C 0.313 3.687 5 C -0.173 4.173 6 C -0.057 4.057 7 C 0.565 3.435 8 O -0.574 6.574 9 N -0.612 5.612 10 C 0.112 3.888 11 C -0.116 4.116 12 H 0.057 0.943 13 C -0.083 4.083 14 C -0.139 4.139 15 C 0.184 3.816 16 H 0.055 0.945 17 N -0.731 5.731 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.297 1.297 25 H -0.299 1.299 26 C -0.122 4.122 27 H 0.105 0.895 28 C 0.137 3.863 29 C -0.164 4.164 30 C 0.146 3.854 31 N -0.535 5.535 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.176 0.824 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.371 0.629 45 H 0.247 0.753 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.149 0.851 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.925 -20.285 -10.384 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.219 6.219 4 C 0.134 3.866 5 C -0.193 4.193 6 C -0.068 4.068 7 C 0.355 3.645 8 O -0.454 6.454 9 N -0.345 5.345 10 C -0.007 4.007 11 C -0.135 4.135 12 H 0.076 0.924 13 C -0.121 4.121 14 C -0.179 4.179 15 C 0.075 3.925 16 H 0.073 0.927 17 N -0.370 5.370 18 C -0.362 4.362 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.224 1.224 25 H -0.227 1.227 26 C -0.142 4.142 27 H 0.124 0.876 28 C 0.016 3.984 29 C -0.185 4.185 30 C -0.009 4.009 31 N -0.259 5.259 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.193 0.807 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.203 0.797 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.167 0.833 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.893 -20.692 -10.580 28.731 hybrid contribution 1.865 1.502 0.862 2.545 sum -15.028 -19.190 -9.718 26.240 Atomic orbital electron populations 1.21843 0.91108 1.04223 1.03442 1.22835 0.96197 0.79833 1.02482 1.86241 1.15838 1.32292 1.87505 1.19761 0.84780 0.89536 0.92529 1.21989 0.94445 0.97834 1.05054 1.19978 0.93716 0.92933 1.00153 1.18236 0.84942 0.84143 0.77193 1.90775 1.17336 1.86229 1.51078 1.49774 1.15570 1.05531 1.63586 1.22459 0.81225 0.98482 0.98583 1.22652 0.99461 0.93991 0.97390 0.92403 1.21796 0.94267 0.92738 1.03299 1.23657 0.96760 0.97216 1.00266 1.20363 0.88122 0.93791 0.90231 0.92708 1.42630 1.38865 1.04556 1.50984 1.19694 1.11711 0.86433 1.18343 0.90303 1.25517 1.00202 1.00325 1.01172 1.69830 1.27879 1.29580 1.35090 0.85141 0.77399 0.80448 0.77217 1.18716 1.22401 1.22720 1.21960 0.96093 0.95954 1.00157 0.87641 1.20786 0.97420 0.79332 1.00904 1.22287 1.02314 0.92054 1.01866 1.22911 0.88695 0.97665 0.91615 1.67289 1.07348 1.33373 1.17926 0.91503 0.88355 0.91581 0.91576 0.91667 0.80665 0.86626 0.88529 0.90735 0.88076 0.93826 0.90514 0.79724 0.94386 0.94101 0.91192 0.83319 0.78079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.06 0.84 6.03 71.98 0.43 1.27 16 3 O -0.31 -5.79 10.11 -90.01 -0.91 -6.70 16 4 C 0.31 6.48 7.49 84.80 0.63 7.12 16 5 C -0.17 -3.62 8.20 22.75 0.19 -3.43 16 6 C -0.06 -1.45 5.83 -19.90 -0.12 -1.56 16 7 C 0.57 18.34 7.78 86.88 0.68 19.01 16 8 O -0.57 -23.37 16.93 -3.76 -0.06 -23.43 16 9 N -0.61 -18.13 3.42 -817.70 -2.80 -20.93 16 10 C 0.11 2.38 4.63 85.36 0.39 2.77 16 11 C -0.12 -2.99 3.09 -9.96 -0.03 -3.02 16 12 H 0.06 1.96 7.88 -2.39 -0.02 1.94 16 13 C -0.08 -1.78 6.59 31.29 0.21 -1.57 16 14 C -0.14 -4.11 6.74 32.79 0.22 -3.88 16 15 C 0.18 6.61 3.46 44.97 0.16 6.76 16 16 H 0.05 1.98 8.09 -2.39 -0.02 1.96 16 17 N -0.73 -35.56 4.86 -323.02 -1.57 -37.13 16 18 C -0.23 -12.51 9.96 84.03 0.84 -11.67 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 21 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 22 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 26 C -0.12 -3.59 2.29 -11.19 -0.03 -3.61 16 27 H 0.11 2.42 7.93 -2.38 -0.02 2.40 16 28 C 0.14 4.72 6.68 84.79 0.57 5.29 16 29 C -0.16 -3.61 9.67 22.62 0.22 -3.39 16 30 C 0.15 2.53 11.17 84.62 0.94 3.48 16 31 N -0.53 -10.66 9.18 -309.14 -2.84 -13.49 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.18 3.01 4.10 -2.91 -0.01 3.00 16 38 H 0.12 1.68 7.25 -2.39 -0.02 1.66 16 39 H 0.10 1.86 6.42 -2.39 -0.02 1.84 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.37 19.97 6.73 -92.71 -0.62 19.35 16 45 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 46 H 0.04 1.79 7.21 -2.39 -0.02 1.77 16 47 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 48 H 0.15 3.25 7.83 -2.91 -0.02 3.23 16 49 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.64 392.65 0.98 -73.66 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.35 Total: 30.89 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.51 Total: 8.82 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -6.93 Total: -131.97 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.97 Total: -30.13 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.64 0.98 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.660 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds