Wall clock time and date at job start Wed Apr 1 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42891 * 109.47321 * 2 1 4 4 C 1.35685 * 117.00060 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.62438 * 180.27732 * 4 3 2 6 6 C 1.39578 * 118.94945 * 180.22885 * 5 4 3 7 7 C 1.48155 * 120.89167 * 179.77782 * 6 5 4 8 8 O 1.21513 * 120.00367 * 7.39662 * 7 6 5 9 9 N 1.34786 * 119.99568 * 187.38968 * 7 6 5 10 10 C 1.46903 * 125.61949 * 355.17741 * 9 7 6 11 11 C 1.54209 * 107.63224 * 178.51574 * 10 9 7 12 12 H 1.08999 * 113.72139 * 215.27718 * 11 10 9 13 13 C 1.54844 * 108.90737 * 87.30539 * 11 10 9 14 14 C 1.54137 * 104.62735 * 214.24443 * 13 11 10 15 15 C 1.53865 * 106.49761 * 24.50073 * 14 13 11 16 16 H 1.09001 * 110.09272 * 238.86770 * 15 14 13 17 17 N 1.46500 * 109.92450 * 117.64445 * 15 14 13 18 18 C 1.36943 * 119.99679 * 87.43777 * 17 15 14 19 19 H 1.07998 * 119.99858 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99722 * 180.27488 * 18 17 15 21 21 N 1.31619 * 120.00132 * 359.72888 * 20 18 17 22 22 Si 1.86795 * 119.99606 * 179.72447 * 20 18 17 23 23 H 1.48506 * 109.46842 * 90.00290 * 22 20 18 24 24 H 1.48504 * 109.47220 * 210.00094 * 22 20 18 25 25 H 1.48500 * 109.47568 * 330.00654 * 22 20 18 26 26 C 1.53711 * 107.02772 * 358.30268 * 15 14 13 27 27 H 1.09005 * 112.96848 * 214.88179 * 26 15 14 28 28 C 1.48754 * 125.79141 * 176.14309 * 9 7 6 29 29 C 1.39966 * 118.21107 * 359.49876 * 6 5 4 30 30 C 1.37974 * 119.13722 * 0.26028 * 29 6 5 31 31 N 1.31912 * 120.97847 * 359.97438 * 30 29 6 32 32 H 1.08999 * 109.47024 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46582 * 300.00309 * 1 2 3 34 34 H 1.09002 * 109.46962 * 60.00053 * 1 2 3 35 35 H 1.09003 * 109.47017 * 239.99719 * 2 1 3 36 36 H 1.08994 * 109.47518 * 120.00243 * 2 1 3 37 37 H 1.08003 * 120.53056 * 359.97438 * 5 4 3 38 38 H 1.08996 * 109.82436 * 58.98522 * 10 9 7 39 39 H 1.09003 * 109.81952 * 298.04045 * 10 9 7 40 40 H 1.08997 * 110.40478 * 333.03205 * 13 11 10 41 41 H 1.08998 * 110.40294 * 95.34256 * 13 11 10 42 42 H 1.08997 * 110.05287 * 265.23889 * 14 13 11 43 43 H 1.09002 * 110.04900 * 143.75943 * 14 13 11 44 44 H 0.96998 * 120.00466 * 267.44360 * 17 15 14 45 45 H 0.96993 * 119.99807 * 179.97438 * 21 20 18 46 46 H 1.08991 * 111.62446 * 85.08181 * 28 9 7 47 47 H 1.08995 * 109.63220 * 322.50147 * 28 9 7 48 48 H 1.08002 * 120.42965 * 180.27484 * 29 6 5 49 49 H 1.08002 * 119.51321 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 6 3.8740 2.8118 0.0053 6 6 5.2598 2.9784 -0.0002 7 6 5.8633 4.3315 0.0007 8 8 5.1584 5.3111 0.1417 9 7 7.1944 4.4757 -0.1548 10 6 8.1702 3.3804 -0.2341 11 6 9.5618 4.0092 -0.4488 12 1 10.2155 3.4187 -1.0906 13 6 10.1795 4.3438 0.9311 14 6 10.9933 5.6308 0.6916 15 6 10.3637 6.3250 -0.5287 16 1 11.1072 6.4434 -1.3171 17 7 9.8354 7.6351 -0.1404 18 6 10.6492 8.7362 -0.1651 19 1 11.6803 8.6389 -0.4712 20 6 10.1501 9.9765 0.2084 21 7 8.8934 10.0952 0.5811 22 14 11.2622 11.4771 0.1821 23 1 11.1871 12.1255 -1.1518 24 1 10.8218 12.4381 1.2251 25 1 12.6619 11.0608 0.4519 26 6 9.2195 5.4233 -1.0190 27 1 9.1040 5.4341 -2.1029 28 6 7.9236 5.7684 -0.2546 29 6 6.0639 1.8328 -0.0007 30 6 5.4635 0.5906 -0.0011 31 7 4.1497 0.4714 -0.0007 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.2185 3.6701 0.0098 38 1 7.9261 2.7279 -1.0723 39 1 8.1616 2.8099 0.6947 40 1 9.3943 4.5219 1.6659 41 1 10.8319 3.5356 1.2615 42 1 12.0340 5.3818 0.4843 43 1 10.9307 6.2804 1.5646 44 1 8.9093 7.7226 0.1343 45 1 8.5448 10.9618 0.8424 46 1 8.1613 6.1725 0.7294 47 1 7.3277 6.4820 -0.8234 48 1 7.1404 1.9201 -0.0004 49 1 6.0781 -0.2975 -0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026350964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:50 Heat of formation + Delta-G solvation = 7.128912 kcal Electronic energy + Delta-G solvation = -30245.943519 eV Core-core repulsion = 26174.717351 eV Total energy + Delta-G solvation = -4071.226169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23030 -40.30445 -38.73380 -37.88553 -35.33762 -33.40935 -32.78736 -32.39840 -31.04355 -30.32654 -29.20371 -28.52690 -25.92406 -25.23876 -23.84035 -23.45202 -23.24403 -22.38133 -20.29135 -19.81817 -18.96416 -18.49002 -17.49882 -17.27609 -16.60078 -16.40963 -16.12154 -15.50195 -15.43638 -15.06548 -14.79884 -14.47028 -14.16440 -14.14378 -14.03569 -13.56836 -13.17244 -13.01804 -12.93151 -12.80131 -12.69270 -12.50224 -12.29984 -12.03299 -11.77071 -11.61520 -11.28752 -11.09227 -10.81640 -10.71863 -10.61082 -10.51243 -10.34585 -10.28940 -10.14756 -10.12082 -9.85731 -9.67679 -9.62966 -8.92320 -8.81635 -8.57194 -6.98445 -5.77176 -3.07405 0.50929 0.87611 2.55303 2.81441 3.01791 3.43118 3.48114 3.50285 3.60913 3.97093 4.19220 4.38811 4.51803 4.64182 4.66118 4.67066 4.72304 4.81204 4.82873 4.97849 5.04360 5.21045 5.29944 5.31778 5.33990 5.44068 5.46775 5.48522 5.53167 5.58055 5.69178 5.71294 5.80496 5.81573 5.88450 5.91458 5.97670 6.04690 6.16328 6.29216 6.40184 6.45365 6.47936 6.61218 6.75571 6.95678 7.06118 7.49300 7.50823 7.69911 8.09929 8.40780 9.51617 10.07928 10.40954 11.44930 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.002259 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.498571 B =12389.390227 C =13543.797885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.305 6.305 4 C 0.319 3.681 5 C -0.134 4.134 6 C -0.043 4.043 7 C 0.567 3.433 8 O -0.521 6.521 9 N -0.606 5.606 10 C 0.094 3.906 11 C -0.105 4.105 12 H 0.104 0.896 13 C -0.116 4.116 14 C -0.146 4.146 15 C 0.183 3.817 16 H 0.055 0.945 17 N -0.725 5.725 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.106 4.106 27 H 0.089 0.911 28 C 0.119 3.881 29 C -0.216 4.216 30 C 0.135 3.865 31 N -0.531 5.531 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.154 0.846 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.173 0.827 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -25.151 -1.970 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.212 6.212 4 C 0.140 3.860 5 C -0.156 4.156 6 C -0.054 4.054 7 C 0.355 3.645 8 O -0.397 6.397 9 N -0.340 5.340 10 C -0.028 4.028 11 C -0.124 4.124 12 H 0.123 0.877 13 C -0.154 4.154 14 C -0.186 4.186 15 C 0.072 3.928 16 H 0.073 0.927 17 N -0.368 5.368 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.126 4.126 27 H 0.108 0.892 28 C -0.002 4.002 29 C -0.235 4.235 30 C -0.021 4.021 31 N -0.255 5.255 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.172 0.828 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.222 0.778 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.189 0.811 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.155 -25.074 -1.890 26.435 hybrid contribution 0.702 1.406 0.158 1.580 sum -7.454 -23.667 -1.732 24.874 Atomic orbital electron populations 1.21830 0.92946 1.02885 1.03490 1.22613 0.94812 0.80941 1.02481 1.86260 1.16513 1.30751 1.87708 1.19593 0.84194 0.89414 0.92798 1.21147 0.94640 0.96459 1.03330 1.20121 0.93134 0.93961 0.98142 1.17719 0.80928 0.87993 0.77902 1.90839 1.60269 1.39777 1.48862 1.48739 1.04881 1.09314 1.71053 1.22511 0.89254 0.90074 1.00983 1.23235 0.94261 0.96523 0.98368 0.87744 1.22408 0.99430 0.98202 0.95336 1.22980 0.98171 0.95761 1.01709 1.20677 0.92469 0.85774 0.93916 0.92673 1.42710 1.12303 1.01948 1.79873 1.19228 0.93626 0.86619 1.37970 0.91135 1.24764 0.96256 0.97733 1.02083 1.69656 1.13193 1.23856 1.51062 0.86211 0.79656 0.83179 0.77225 1.21747 1.21822 1.20795 1.23245 0.95441 0.94398 0.99507 0.89229 1.22531 0.91546 0.84086 1.02006 1.23500 1.04018 0.92520 1.03507 1.22407 0.88887 0.97296 0.93471 1.67176 1.07025 1.33343 1.17998 0.90277 0.91554 0.91559 0.91596 0.91595 0.82845 0.90636 0.90515 0.91777 0.92208 0.92921 0.90699 0.77770 0.93387 0.89261 0.89856 0.81062 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.07 0.56 6.03 37.16 0.22 0.79 16 3 O -0.30 -3.53 10.11 -18.76 -0.19 -3.72 16 4 C 0.32 3.91 7.49 -17.16 -0.13 3.78 16 5 C -0.13 -1.77 9.61 -38.84 -0.37 -2.14 16 6 C -0.04 -0.56 5.90 -104.68 -0.62 -1.17 16 7 C 0.57 9.08 7.84 -12.18 -0.10 8.99 16 8 O -0.52 -10.51 16.77 5.35 0.09 -10.42 16 9 N -0.61 -8.73 3.35 -171.17 -0.57 -9.31 16 10 C 0.09 0.95 4.17 -3.19 -0.01 0.94 16 11 C -0.10 -1.14 4.18 -87.26 -0.37 -1.51 16 12 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 13 C -0.12 -1.43 5.61 -25.17 -0.14 -1.57 16 14 C -0.15 -2.31 6.56 -25.69 -0.17 -2.48 16 15 C 0.18 3.30 3.24 -67.11 -0.22 3.08 16 16 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 17 N -0.73 -17.24 4.79 -52.63 -0.25 -17.49 16 18 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.11 -1.57 4.01 -87.78 -0.35 -1.92 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 C 0.12 2.03 4.49 -2.08 -0.01 2.02 16 29 C -0.22 -2.08 8.66 -39.03 -0.34 -2.42 16 30 C 0.13 1.19 11.17 -17.61 -0.20 1.00 16 31 N -0.53 -5.86 9.18 -13.38 -0.12 -5.99 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.15 2.09 7.76 -52.48 -0.41 1.68 16 38 H 0.08 0.61 6.66 -51.93 -0.35 0.26 16 39 H 0.08 0.66 6.55 -51.93 -0.34 0.32 16 40 H 0.06 0.87 7.33 -51.93 -0.38 0.49 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.42 7.91 -51.93 -0.41 1.00 16 44 H 0.39 9.82 5.33 -40.82 -0.22 9.60 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.09 1.73 6.28 -51.93 -0.33 1.41 16 47 H 0.08 1.64 8.07 -51.93 -0.42 1.22 16 48 H 0.17 1.27 2.96 -52.79 -0.16 1.12 16 49 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -33.27 387.17 -9.36 -42.63 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.19 Total: 8.86 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.66 Total: -0.31 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.22 Total: -60.07 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.10 Total: -14.14 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.27 -9.36 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.759 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds