Wall clock time and date at job start Wed Apr 1 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42891 * 109.47321 * 2 1 4 4 C 1.35685 * 117.00060 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.62438 * 180.27732 * 4 3 2 6 6 C 1.39578 * 118.94945 * 180.22885 * 5 4 3 7 7 C 1.48155 * 120.89167 * 179.77782 * 6 5 4 8 8 O 1.21513 * 120.00367 * 7.39662 * 7 6 5 9 9 N 1.34786 * 119.99568 * 187.38968 * 7 6 5 10 10 C 1.46903 * 125.61949 * 355.17741 * 9 7 6 11 11 C 1.54209 * 107.63224 * 178.51574 * 10 9 7 12 12 H 1.08999 * 113.72139 * 215.27718 * 11 10 9 13 13 C 1.54844 * 108.90737 * 87.30539 * 11 10 9 14 14 C 1.54137 * 104.62735 * 214.24443 * 13 11 10 15 15 C 1.53865 * 106.49761 * 24.50073 * 14 13 11 16 16 H 1.09001 * 110.09272 * 238.86770 * 15 14 13 17 17 N 1.46500 * 109.92450 * 117.64445 * 15 14 13 18 18 C 1.36943 * 119.99679 * 87.43777 * 17 15 14 19 19 H 1.07998 * 119.99858 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99722 * 180.27488 * 18 17 15 21 21 N 1.31619 * 120.00132 * 359.72888 * 20 18 17 22 22 Si 1.86795 * 119.99606 * 179.72447 * 20 18 17 23 23 H 1.48506 * 109.46842 * 90.00290 * 22 20 18 24 24 H 1.48504 * 109.47220 * 210.00094 * 22 20 18 25 25 H 1.48500 * 109.47568 * 330.00654 * 22 20 18 26 26 C 1.53711 * 107.02772 * 358.30268 * 15 14 13 27 27 H 1.09005 * 112.96848 * 214.88179 * 26 15 14 28 28 C 1.48754 * 125.79141 * 176.14309 * 9 7 6 29 29 C 1.39966 * 118.21107 * 359.49876 * 6 5 4 30 30 C 1.37974 * 119.13722 * 0.26028 * 29 6 5 31 31 N 1.31912 * 120.97847 * 359.97438 * 30 29 6 32 32 H 1.08999 * 109.47024 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46582 * 300.00309 * 1 2 3 34 34 H 1.09002 * 109.46962 * 60.00053 * 1 2 3 35 35 H 1.09003 * 109.47017 * 239.99719 * 2 1 3 36 36 H 1.08994 * 109.47518 * 120.00243 * 2 1 3 37 37 H 1.08003 * 120.53056 * 359.97438 * 5 4 3 38 38 H 1.08996 * 109.82436 * 58.98522 * 10 9 7 39 39 H 1.09003 * 109.81952 * 298.04045 * 10 9 7 40 40 H 1.08997 * 110.40478 * 333.03205 * 13 11 10 41 41 H 1.08998 * 110.40294 * 95.34256 * 13 11 10 42 42 H 1.08997 * 110.05287 * 265.23889 * 14 13 11 43 43 H 1.09002 * 110.04900 * 143.75943 * 14 13 11 44 44 H 0.96998 * 120.00466 * 267.44360 * 17 15 14 45 45 H 0.96993 * 119.99807 * 179.97438 * 21 20 18 46 46 H 1.08991 * 111.62446 * 85.08181 * 28 9 7 47 47 H 1.08995 * 109.63220 * 322.50147 * 28 9 7 48 48 H 1.08002 * 120.42965 * 180.27484 * 29 6 5 49 49 H 1.08002 * 119.51321 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 6 3.8740 2.8118 0.0053 6 6 5.2598 2.9784 -0.0002 7 6 5.8633 4.3315 0.0007 8 8 5.1584 5.3111 0.1417 9 7 7.1944 4.4757 -0.1548 10 6 8.1702 3.3804 -0.2341 11 6 9.5618 4.0092 -0.4488 12 1 10.2155 3.4187 -1.0906 13 6 10.1795 4.3438 0.9311 14 6 10.9933 5.6308 0.6916 15 6 10.3637 6.3250 -0.5287 16 1 11.1072 6.4434 -1.3171 17 7 9.8354 7.6351 -0.1404 18 6 10.6492 8.7362 -0.1651 19 1 11.6803 8.6389 -0.4712 20 6 10.1501 9.9765 0.2084 21 7 8.8934 10.0952 0.5811 22 14 11.2622 11.4771 0.1821 23 1 11.1871 12.1255 -1.1518 24 1 10.8218 12.4381 1.2251 25 1 12.6619 11.0608 0.4519 26 6 9.2195 5.4233 -1.0190 27 1 9.1040 5.4341 -2.1029 28 6 7.9236 5.7684 -0.2546 29 6 6.0639 1.8328 -0.0007 30 6 5.4635 0.5906 -0.0011 31 7 4.1497 0.4714 -0.0007 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.2185 3.6701 0.0098 38 1 7.9261 2.7279 -1.0723 39 1 8.1616 2.8099 0.6947 40 1 9.3943 4.5219 1.6659 41 1 10.8319 3.5356 1.2615 42 1 12.0340 5.3818 0.4843 43 1 10.9307 6.2804 1.5646 44 1 8.9093 7.7226 0.1343 45 1 8.5448 10.9618 0.8424 46 1 8.1613 6.1725 0.7294 47 1 7.3277 6.4820 -0.8234 48 1 7.1404 1.9201 -0.0004 49 1 6.0781 -0.2975 -0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026350964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:49 Heat of formation + Delta-G solvation = -16.763175 kcal Electronic energy + Delta-G solvation = -30246.979558 eV Core-core repulsion = 26174.717351 eV Total energy + Delta-G solvation = -4072.262207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.22547 -41.33289 -39.88736 -38.84132 -36.79621 -35.05613 -33.76401 -33.07551 -32.72538 -31.21832 -30.37278 -29.89559 -27.23931 -26.36252 -25.23973 -24.64909 -24.22434 -23.27040 -21.29564 -20.96022 -20.30970 -19.58214 -19.12645 -18.38742 -17.51720 -17.33256 -17.25402 -16.72568 -16.58215 -16.44815 -16.18148 -15.69223 -15.30313 -15.05159 -14.91193 -14.89353 -14.46822 -14.34284 -13.98699 -13.88998 -13.57622 -13.42752 -13.32607 -13.26022 -13.03467 -12.89810 -12.57791 -12.48294 -12.37677 -12.14978 -11.76602 -11.73668 -11.61820 -11.54333 -11.44589 -11.40882 -11.17161 -11.09172 -10.91084 -10.62855 -9.82564 -9.58794 -8.97922 -7.93298 -5.21747 -0.44781 0.06176 1.45564 1.47385 1.55627 1.56343 1.69292 2.07372 2.56114 2.71688 3.14429 3.27740 3.35184 3.40110 3.54419 3.79969 3.85526 3.92272 4.06550 4.08846 4.16549 4.19190 4.22248 4.33654 4.34874 4.43350 4.45167 4.56121 4.61046 4.66674 4.67894 4.75000 4.79230 4.82498 4.88036 4.94163 4.95659 5.07859 5.12194 5.15758 5.19884 5.30715 5.33563 5.36123 5.51181 5.57232 5.69422 6.17444 6.29139 6.35311 6.69637 6.88304 7.34228 8.13859 8.32662 9.30272 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.002259 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.498571 B =12389.390227 C =13543.797885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.323 6.323 4 C 0.312 3.688 5 C -0.160 4.160 6 C -0.054 4.054 7 C 0.559 3.441 8 O -0.583 6.583 9 N -0.601 5.601 10 C 0.083 3.917 11 C -0.080 4.080 12 H 0.152 0.848 13 C -0.110 4.110 14 C -0.140 4.140 15 C 0.170 3.830 16 H 0.056 0.944 17 N -0.742 5.742 18 C -0.232 4.232 19 H 0.080 0.920 20 C -0.084 4.084 21 N -0.975 5.975 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.301 1.301 25 H -0.265 1.265 26 C -0.102 4.102 27 H 0.099 0.901 28 C 0.126 3.874 29 C -0.198 4.198 30 C 0.148 3.852 31 N -0.532 5.532 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.372 0.628 45 H 0.248 0.752 46 H 0.057 0.943 47 H 0.040 0.960 48 H 0.203 0.797 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 -30.195 -2.798 30.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.231 6.231 4 C 0.134 3.866 5 C -0.182 4.182 6 C -0.065 4.065 7 C 0.349 3.651 8 O -0.464 6.464 9 N -0.333 5.333 10 C -0.037 4.037 11 C -0.099 4.099 12 H 0.170 0.830 13 C -0.147 4.147 14 C -0.180 4.180 15 C 0.062 3.938 16 H 0.074 0.926 17 N -0.383 5.383 18 C -0.365 4.365 19 H 0.098 0.902 20 C -0.275 4.275 21 N -0.626 5.626 22 Si 0.801 3.199 23 H -0.217 1.217 24 H -0.228 1.228 25 H -0.190 1.190 26 C -0.122 4.122 27 H 0.117 0.883 28 C 0.003 3.997 29 C -0.217 4.217 30 C -0.008 4.008 31 N -0.257 5.257 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.206 0.794 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.219 0.781 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.499 -30.206 -2.740 30.824 hybrid contribution -0.057 2.869 0.404 2.898 sum -5.556 -27.337 -2.336 27.994 Atomic orbital electron populations 1.21860 0.91421 1.04362 1.03115 1.22851 0.96043 0.79609 1.02755 1.86248 1.16493 1.32732 1.87633 1.19561 0.84699 0.89209 0.93133 1.21052 0.94986 0.96586 1.05571 1.19896 0.93252 0.93178 1.00176 1.18335 0.81116 0.88799 0.76875 1.90800 1.61805 1.42043 1.51753 1.48775 1.05064 1.09550 1.69918 1.22983 0.87395 0.89126 1.04169 1.23329 0.95277 0.93849 0.97404 0.83048 1.22387 0.99057 0.97236 0.96033 1.22783 0.99905 0.96774 0.98565 1.21043 0.93738 0.84102 0.94967 0.92557 1.42985 1.11581 1.03725 1.80048 1.19681 0.94126 0.87503 1.35141 0.90175 1.25591 0.97602 1.00874 1.03459 1.69846 1.15253 1.23779 1.53715 0.85156 0.78575 0.79507 0.76644 1.21654 1.22850 1.18999 1.23155 0.92548 0.96794 0.99684 0.88299 1.22155 0.92602 0.84989 0.99926 1.23797 1.04989 0.91264 1.01635 1.23270 0.88331 0.98582 0.90603 1.67314 1.08106 1.32478 1.17815 0.87810 0.91974 0.91893 0.91178 0.91294 0.85174 0.86726 0.87491 0.93639 0.88228 0.90824 0.94725 0.79356 0.94352 0.92487 0.94162 0.78077 0.76826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.06 0.99 6.03 71.98 0.43 1.42 16 3 O -0.32 -7.58 10.11 -90.03 -0.91 -8.49 16 4 C 0.31 7.52 7.49 84.80 0.63 8.16 16 5 C -0.16 -4.41 9.61 22.75 0.22 -4.19 16 6 C -0.05 -1.38 5.90 -19.90 -0.12 -1.50 16 7 C 0.56 18.61 7.84 86.88 0.68 19.29 16 8 O -0.58 -25.89 16.77 -3.76 -0.06 -25.95 16 9 N -0.60 -17.04 3.35 -813.74 -2.73 -19.77 16 10 C 0.08 1.29 4.17 86.71 0.36 1.65 16 11 C -0.08 -1.34 4.18 -8.62 -0.04 -1.38 16 12 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 13 C -0.11 -2.28 5.61 31.61 0.18 -2.10 16 14 C -0.14 -4.23 6.56 31.27 0.21 -4.03 16 15 C 0.17 6.07 3.24 45.52 0.15 6.22 16 16 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 17 N -0.74 -36.77 4.79 -320.42 -1.54 -38.31 16 18 C -0.23 -12.81 9.95 84.03 0.84 -11.97 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 21 N -0.97 -62.13 13.06 21.65 0.28 -61.85 16 22 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.10 -2.90 4.01 -8.96 -0.04 -2.93 16 27 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 28 C 0.13 4.52 4.49 86.41 0.39 4.91 16 29 C -0.20 -2.96 8.66 22.63 0.20 -2.77 16 30 C 0.15 1.88 11.17 84.62 0.94 2.83 16 31 N -0.53 -10.24 9.18 -309.14 -2.84 -13.08 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.13 4.05 7.76 -2.91 -0.02 4.03 16 38 H 0.12 1.03 6.66 -2.39 -0.02 1.02 16 39 H 0.11 1.14 6.55 -2.39 -0.02 1.12 16 40 H 0.04 1.14 7.33 -2.39 -0.02 1.12 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 1.32 7.91 -2.39 -0.02 1.30 16 44 H 0.37 20.40 5.33 -92.71 -0.49 19.91 16 45 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.06 2.42 6.28 -2.39 -0.02 2.40 16 47 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 48 H 0.20 1.65 2.96 -3.20 -0.01 1.64 16 49 H 0.22 0.61 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -82.62 387.17 0.96 -81.67 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.48 Total: 28.48 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.24 Total: 8.20 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -6.82 Total: -133.01 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.97 Total: -34.44 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -82.62 0.96 -81.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026350964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.903 kcal (2) G-P(sol) polarization free energy of solvation -82.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds