Wall clock time and date at job start Wed Apr 1 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47569 * 2 1 4 4 C 1.35425 * 117.00425 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79707 * 0.02562 * 4 3 2 6 6 C 1.31882 * 121.79721 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.19051 * 0.02562 * 6 5 4 8 8 C 1.38340 * 119.45532 * 359.73643 * 7 6 5 9 9 C 1.39989 * 118.34683 * 0.50218 * 8 7 6 10 10 C 1.47522 * 120.59500 * 179.77782 * 9 8 7 11 11 O 1.21590 * 120.00011 * 221.38532 * 10 9 8 12 12 N 1.34775 * 120.00149 * 41.39038 * 10 9 8 13 13 C 1.49217 * 126.05469 * 355.16193 * 12 10 9 14 14 C 1.50358 * 104.85958 * 172.91451 * 13 12 10 15 15 H 1.08991 * 109.74103 * 279.05497 * 14 13 12 16 16 C 1.51008 * 125.53703 * 144.30274 * 14 13 12 17 17 C 1.56405 * 101.59388 * 204.00002 * 16 14 13 18 18 C 1.55944 * 105.78559 * 25.02065 * 17 16 14 19 19 H 1.08999 * 110.49584 * 248.87262 * 18 17 16 20 20 N 1.46502 * 110.60959 * 126.26706 * 18 17 16 21 21 C 1.36936 * 120.00207 * 90.19534 * 20 18 17 22 22 H 1.08002 * 119.99790 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99944 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99741 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00032 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46890 * 90.00355 * 25 23 21 27 27 H 1.48500 * 109.46943 * 210.00172 * 25 23 21 28 28 H 1.48498 * 109.46866 * 329.99999 * 25 23 21 29 29 C 1.50291 * 104.15777 * 7.54302 * 18 17 16 30 30 H 1.08996 * 109.99652 * 80.47421 * 29 18 17 31 31 C 1.49700 * 126.06258 * 175.14481 * 12 10 9 32 32 H 1.09003 * 109.47016 * 60.00054 * 1 2 3 33 33 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46872 * 300.00513 * 1 2 3 35 35 H 1.09003 * 109.46872 * 239.99487 * 2 1 3 36 36 H 1.09003 * 109.47016 * 119.99946 * 2 1 3 37 37 H 1.08000 * 119.40319 * 179.97438 * 6 5 4 38 38 H 1.07993 * 120.27386 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.82470 * 180.25993 * 8 7 6 40 40 H 1.09000 * 110.36355 * 54.07297 * 13 12 10 41 41 H 1.08997 * 110.36281 * 291.76372 * 13 12 10 42 42 H 1.08996 * 111.00336 * 322.07453 * 16 14 13 43 43 H 1.08994 * 111.00232 * 85.92476 * 16 14 13 44 44 H 1.08996 * 110.18827 * 144.09359 * 17 16 14 45 45 H 1.08992 * 110.18810 * 265.94313 * 17 16 14 46 46 H 0.97009 * 119.99779 * 270.20160 * 20 18 17 47 47 H 0.97003 * 119.99858 * 180.02562 * 24 23 21 48 48 H 1.08998 * 110.84349 * 36.68558 * 31 12 10 49 49 H 1.09001 * 110.84190 * 273.07635 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0015 6 6 5.4635 0.6001 -0.0026 7 6 6.0627 1.8472 -0.0022 8 6 5.2715 2.9820 -0.0062 9 6 3.8807 2.8227 0.0003 10 6 2.9903 3.9989 0.0014 11 8 1.9964 4.0084 0.7019 12 7 3.2782 5.0629 -0.7741 13 6 4.5060 5.2383 -1.6039 14 6 4.2582 6.4898 -2.3994 15 1 3.6330 6.2600 -3.2621 16 6 5.3039 7.5123 -2.7754 17 6 4.4301 8.7920 -2.9879 18 6 3.1484 8.5786 -2.1257 19 1 2.2772 8.4372 -2.7654 20 7 2.9405 9.7123 -1.2214 21 6 2.1908 10.7837 -1.6277 22 1 1.7525 10.7928 -2.6148 23 6 1.9943 11.8582 -0.7710 24 7 1.2734 12.8878 -1.1615 25 14 2.7519 11.8420 0.9364 26 1 4.1050 12.4517 0.8833 27 1 1.8943 12.6205 1.8658 28 1 2.8586 10.4411 1.4173 29 6 3.4355 7.3276 -1.3437 30 1 4.0638 7.5612 -0.4843 31 6 2.4230 6.2780 -0.9561 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 6.0819 -0.2853 -0.0030 38 1 7.1391 1.9340 -0.0026 39 1 5.7158 3.9663 -0.0101 40 1 4.6386 4.3857 -2.2699 41 1 5.3807 5.3616 -0.9655 42 1 6.0179 7.6571 -1.9647 43 1 5.8132 7.2297 -3.6966 44 1 4.9691 9.6762 -2.6478 45 1 4.1631 8.8947 -4.0396 46 1 3.3340 9.7039 -0.3347 47 1 1.1363 13.6388 -0.5630 48 1 1.9250 6.5449 -0.0240 49 1 1.6972 6.1253 -1.7549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026409916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:09 Heat of formation + Delta-G solvation = 4.330573 kcal Electronic energy + Delta-G solvation = -30551.127238 eV Core-core repulsion = 26479.779724 eV Total energy + Delta-G solvation = -4071.347514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28413 -40.37142 -38.49719 -38.24876 -35.47265 -33.56579 -33.00103 -32.35328 -31.20157 -30.55931 -29.40409 -28.78927 -25.78764 -25.15308 -24.22248 -23.08797 -22.59032 -22.38360 -20.39792 -19.95459 -19.29808 -18.70502 -17.70594 -17.26272 -17.17931 -16.66919 -16.25435 -15.60828 -15.19207 -15.08860 -14.73924 -14.37932 -14.22040 -14.17472 -13.87426 -13.71381 -13.47555 -13.06036 -12.93227 -12.72987 -12.67631 -12.64079 -12.30061 -11.99673 -11.97455 -11.78175 -11.59228 -11.17948 -11.05708 -10.87477 -10.83031 -10.54853 -10.41960 -10.35878 -10.29181 -10.04721 -9.87001 -9.69709 -9.57592 -8.95347 -8.88937 -8.66044 -7.29798 -5.78508 -3.14562 0.44367 0.87942 2.58604 2.72900 2.79056 3.37085 3.40304 3.43292 3.45523 3.83269 4.00639 4.34640 4.39434 4.57950 4.58400 4.70872 4.72759 4.74104 4.83414 4.91573 5.06257 5.10175 5.13442 5.22859 5.29899 5.39305 5.45912 5.48418 5.49890 5.57977 5.58217 5.66140 5.68457 5.75699 5.81619 5.88500 5.93724 5.97800 6.02108 6.11265 6.15478 6.23348 6.33533 6.50321 6.67815 6.90826 6.93772 7.35623 7.47213 7.97294 8.11736 8.40662 9.18327 9.90992 10.09971 11.39712 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.002639 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.168160 B =10609.089268 C =11400.389916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.283 6.283 4 C 0.369 3.631 5 N -0.544 5.544 6 C 0.159 3.841 7 C -0.218 4.218 8 C -0.014 4.014 9 C -0.197 4.197 10 C 0.583 3.417 11 O -0.520 6.520 12 N -0.622 5.622 13 C 0.119 3.881 14 C -0.129 4.129 15 H 0.085 0.915 16 C -0.097 4.097 17 C -0.142 4.142 18 C 0.201 3.799 19 H 0.065 0.935 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.122 4.122 30 H 0.079 0.921 31 C 0.130 3.870 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.084 0.916 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -27.663 -1.205 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.189 6.189 4 C 0.189 3.811 5 N -0.268 5.268 6 C 0.002 3.998 7 C -0.239 4.239 8 C -0.040 4.040 9 C -0.203 4.203 10 C 0.370 3.630 11 O -0.395 6.395 12 N -0.357 5.357 13 C -0.003 4.003 14 C -0.148 4.148 15 H 0.103 0.897 16 C -0.136 4.136 17 C -0.183 4.183 18 C 0.091 3.909 19 H 0.083 0.917 20 N -0.386 5.386 21 C -0.375 4.375 22 H 0.109 0.891 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.143 4.143 30 H 0.097 0.903 31 C 0.009 3.991 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.803 -28.195 -0.879 29.863 hybrid contribution 1.095 0.679 1.236 1.785 sum 10.897 -27.516 0.357 29.598 Atomic orbital electron populations 1.21815 0.92718 1.02737 1.03836 1.22685 0.95217 0.80805 1.02350 1.86400 1.15902 1.30589 1.85963 1.19707 0.84554 0.88324 0.88488 1.67469 1.06671 1.32260 1.20421 1.22637 0.89117 0.97674 0.90329 1.21936 1.01721 0.92876 1.07331 1.21855 0.91015 1.00468 0.90615 1.19912 0.94459 0.92317 1.13637 1.17393 0.84846 0.81164 0.79573 1.90832 1.27720 1.80520 1.40463 1.49738 1.21872 1.18566 1.45555 1.21425 0.87351 0.98115 0.93388 1.22194 1.00278 0.93714 0.98619 0.89693 1.21758 0.96422 0.94605 1.00785 1.23752 0.97411 0.96681 1.00468 1.20056 0.95552 0.84498 0.90828 0.91668 1.42852 1.62498 1.18777 1.14443 1.19078 1.23719 0.93903 1.00760 0.89125 1.24671 0.99903 0.96537 0.97889 1.69699 1.43579 1.08342 1.36422 0.86579 0.78960 0.77303 0.85868 1.21129 1.21730 1.20291 1.22562 0.97694 0.95386 0.98617 0.90257 1.21533 0.92669 0.82455 1.02407 0.91530 0.90278 0.91317 0.91591 0.91509 0.81898 0.83815 0.83309 0.91062 0.91274 0.91647 0.91896 0.90714 0.92135 0.80550 0.93039 0.89745 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.65 6.03 37.16 0.22 0.87 16 3 O -0.28 -3.93 8.96 -32.59 -0.29 -4.22 16 4 C 0.37 4.78 7.48 -16.61 -0.12 4.65 16 5 N -0.54 -5.84 9.21 -12.98 -0.12 -5.96 16 6 C 0.16 1.20 11.17 -17.49 -0.20 1.00 16 7 C -0.22 -1.48 10.09 -39.50 -0.40 -1.88 16 8 C -0.01 -0.12 8.57 -38.89 -0.33 -0.46 16 9 C -0.20 -2.49 5.56 -104.69 -0.58 -3.07 16 10 C 0.58 9.01 7.31 -12.48 -0.09 8.92 16 11 O -0.52 -10.08 16.55 -9.34 -0.15 -10.24 16 12 N -0.62 -8.49 3.43 -172.79 -0.59 -9.08 16 13 C 0.12 1.21 5.18 -3.85 -0.02 1.19 16 14 C -0.13 -1.45 2.77 -90.26 -0.25 -1.70 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.10 -1.09 6.72 -25.90 -0.17 -1.27 16 17 C -0.14 -2.15 6.74 -23.33 -0.16 -2.31 16 18 C 0.20 3.56 3.41 -67.71 -0.23 3.33 16 19 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 20 N -0.74 -16.82 4.91 -53.21 -0.26 -17.08 16 21 C -0.24 -6.70 10.44 -15.06 -0.16 -6.86 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 25 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 29 C -0.12 -1.80 2.41 -90.34 -0.22 -2.02 16 30 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 31 C 0.13 1.96 6.83 -3.31 -0.02 1.94 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 37 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.15 1.08 5.60 -52.49 -0.29 0.79 16 40 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 41 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.36 8.15 5.54 -40.82 -0.23 7.92 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -34.95 393.26 -9.46 -44.41 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.59 Total: 5.73 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.44 Total: 1.52 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.20 Total: -60.42 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.45 Total: -14.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.95 -9.46 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.741 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds