Wall clock time and date at job start Wed Apr 1 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47569 * 2 1 4 4 C 1.35425 * 117.00425 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79707 * 0.02562 * 4 3 2 6 6 C 1.31882 * 121.79721 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.19051 * 0.02562 * 6 5 4 8 8 C 1.38340 * 119.45532 * 359.73643 * 7 6 5 9 9 C 1.39989 * 118.34683 * 0.50218 * 8 7 6 10 10 C 1.47522 * 120.59500 * 179.77782 * 9 8 7 11 11 O 1.21590 * 120.00011 * 221.38532 * 10 9 8 12 12 N 1.34775 * 120.00149 * 41.39038 * 10 9 8 13 13 C 1.49217 * 126.05469 * 355.16193 * 12 10 9 14 14 C 1.50358 * 104.85958 * 172.91451 * 13 12 10 15 15 H 1.08991 * 109.74103 * 279.05497 * 14 13 12 16 16 C 1.51008 * 125.53703 * 144.30274 * 14 13 12 17 17 C 1.56405 * 101.59388 * 204.00002 * 16 14 13 18 18 C 1.55944 * 105.78559 * 25.02065 * 17 16 14 19 19 H 1.08999 * 110.49584 * 248.87262 * 18 17 16 20 20 N 1.46502 * 110.60959 * 126.26706 * 18 17 16 21 21 C 1.36936 * 120.00207 * 90.19534 * 20 18 17 22 22 H 1.08002 * 119.99790 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99944 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99741 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00032 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46890 * 90.00355 * 25 23 21 27 27 H 1.48500 * 109.46943 * 210.00172 * 25 23 21 28 28 H 1.48498 * 109.46866 * 329.99999 * 25 23 21 29 29 C 1.50291 * 104.15777 * 7.54302 * 18 17 16 30 30 H 1.08996 * 109.99652 * 80.47421 * 29 18 17 31 31 C 1.49700 * 126.06258 * 175.14481 * 12 10 9 32 32 H 1.09003 * 109.47016 * 60.00054 * 1 2 3 33 33 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46872 * 300.00513 * 1 2 3 35 35 H 1.09003 * 109.46872 * 239.99487 * 2 1 3 36 36 H 1.09003 * 109.47016 * 119.99946 * 2 1 3 37 37 H 1.08000 * 119.40319 * 179.97438 * 6 5 4 38 38 H 1.07993 * 120.27386 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.82470 * 180.25993 * 8 7 6 40 40 H 1.09000 * 110.36355 * 54.07297 * 13 12 10 41 41 H 1.08997 * 110.36281 * 291.76372 * 13 12 10 42 42 H 1.08996 * 111.00336 * 322.07453 * 16 14 13 43 43 H 1.08994 * 111.00232 * 85.92476 * 16 14 13 44 44 H 1.08996 * 110.18827 * 144.09359 * 17 16 14 45 45 H 1.08992 * 110.18810 * 265.94313 * 17 16 14 46 46 H 0.97009 * 119.99779 * 270.20160 * 20 18 17 47 47 H 0.97003 * 119.99858 * 180.02562 * 24 23 21 48 48 H 1.08998 * 110.84349 * 36.68558 * 31 12 10 49 49 H 1.09001 * 110.84190 * 273.07635 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0015 6 6 5.4635 0.6001 -0.0026 7 6 6.0627 1.8472 -0.0022 8 6 5.2715 2.9820 -0.0062 9 6 3.8807 2.8227 0.0003 10 6 2.9903 3.9989 0.0014 11 8 1.9964 4.0084 0.7019 12 7 3.2782 5.0629 -0.7741 13 6 4.5060 5.2383 -1.6039 14 6 4.2582 6.4898 -2.3994 15 1 3.6330 6.2600 -3.2621 16 6 5.3039 7.5123 -2.7754 17 6 4.4301 8.7920 -2.9879 18 6 3.1484 8.5786 -2.1257 19 1 2.2772 8.4372 -2.7654 20 7 2.9405 9.7123 -1.2214 21 6 2.1908 10.7837 -1.6277 22 1 1.7525 10.7928 -2.6148 23 6 1.9943 11.8582 -0.7710 24 7 1.2734 12.8878 -1.1615 25 14 2.7519 11.8420 0.9364 26 1 4.1050 12.4517 0.8833 27 1 1.8943 12.6205 1.8658 28 1 2.8586 10.4411 1.4173 29 6 3.4355 7.3276 -1.3437 30 1 4.0638 7.5612 -0.4843 31 6 2.4230 6.2780 -0.9561 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 6.0819 -0.2853 -0.0030 38 1 7.1391 1.9340 -0.0026 39 1 5.7158 3.9663 -0.0101 40 1 4.6386 4.3857 -2.2699 41 1 5.3807 5.3616 -0.9655 42 1 6.0179 7.6571 -1.9647 43 1 5.8132 7.2297 -3.6966 44 1 4.9691 9.6762 -2.6478 45 1 4.1631 8.8947 -4.0396 46 1 3.3340 9.7039 -0.3347 47 1 1.1363 13.6388 -0.5630 48 1 1.9250 6.5449 -0.0240 49 1 1.6972 6.1253 -1.7549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026409916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:07 Heat of formation + Delta-G solvation = -20.265240 kcal Electronic energy + Delta-G solvation = -30552.193792 eV Core-core repulsion = 26479.779724 eV Total energy + Delta-G solvation = -4072.414068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.16683 -41.37680 -39.62662 -39.06624 -36.92179 -35.16709 -33.83650 -33.07941 -33.05328 -31.38327 -30.54819 -29.96165 -27.19980 -25.95868 -25.04692 -24.57286 -23.79275 -23.26288 -21.56851 -20.93972 -20.59065 -19.59379 -19.46602 -18.25990 -18.07697 -17.62794 -17.27075 -16.65933 -16.31732 -16.25165 -15.96909 -15.80684 -15.09589 -15.05018 -14.95600 -14.78649 -14.68257 -14.48430 -14.12508 -13.83045 -13.54910 -13.42282 -13.38875 -13.31383 -13.22403 -13.00495 -12.62977 -12.53219 -12.33898 -12.30016 -12.13832 -11.83835 -11.79273 -11.59523 -11.39531 -11.31981 -11.07417 -11.00423 -10.91568 -10.61924 -9.84109 -9.54538 -9.29361 -8.02241 -5.34605 -0.27867 0.21762 1.36174 1.39415 1.46114 1.56461 1.77155 1.96500 2.47639 2.70840 2.89631 3.18923 3.30273 3.51591 3.51932 3.75039 3.85084 3.93996 3.95230 4.01003 4.09578 4.14617 4.18840 4.25949 4.35857 4.39932 4.45759 4.48850 4.55777 4.63231 4.67435 4.74377 4.76887 4.85505 4.86090 4.90798 4.93256 5.04008 5.08751 5.13878 5.14493 5.24710 5.34420 5.43992 5.52706 5.54846 5.79506 6.18170 6.22833 6.37267 6.72508 7.00570 7.08422 7.85639 8.03144 9.19500 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.002639 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.168160 B =10609.089268 C =11400.389916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.317 6.317 4 C 0.345 3.655 5 N -0.556 5.556 6 C 0.159 3.841 7 C -0.198 4.198 8 C -0.010 4.010 9 C -0.224 4.224 10 C 0.578 3.422 11 O -0.577 6.577 12 N -0.619 5.619 13 C 0.120 3.880 14 C -0.106 4.106 15 H 0.086 0.914 16 C -0.080 4.080 17 C -0.138 4.138 18 C 0.190 3.810 19 H 0.047 0.953 20 N -0.749 5.749 21 C -0.224 4.224 22 H 0.058 0.942 23 C -0.065 4.065 24 N -0.985 5.985 25 Si 0.952 3.048 26 H -0.274 1.274 27 H -0.300 1.300 28 H -0.258 1.258 29 C -0.124 4.124 30 H 0.079 0.921 31 C 0.129 3.871 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.203 0.797 38 H 0.188 0.812 39 H 0.169 0.831 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.364 0.636 47 H 0.256 0.744 48 H 0.054 0.946 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.817 -30.757 -1.329 34.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.224 6.224 4 C 0.166 3.834 5 N -0.281 5.281 6 C 0.003 3.997 7 C -0.218 4.218 8 C -0.036 4.036 9 C -0.231 4.231 10 C 0.368 3.632 11 O -0.457 6.457 12 N -0.353 5.353 13 C 0.000 4.000 14 C -0.125 4.125 15 H 0.105 0.895 16 C -0.118 4.118 17 C -0.179 4.179 18 C 0.081 3.919 19 H 0.065 0.935 20 N -0.392 5.392 21 C -0.355 4.355 22 H 0.076 0.924 23 C -0.256 4.256 24 N -0.636 5.636 25 Si 0.780 3.220 26 H -0.200 1.200 27 H -0.227 1.227 28 H -0.183 1.183 29 C -0.144 4.144 30 H 0.097 0.903 31 C 0.007 3.993 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.220 0.780 38 H 0.205 0.795 39 H 0.187 0.813 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.485 -31.352 -1.049 34.552 hybrid contribution -0.321 1.534 1.156 1.948 sum 14.164 -29.818 0.108 33.011 Atomic orbital electron populations 1.21842 0.91961 1.04240 1.02680 1.22834 0.95855 0.79808 1.02721 1.86365 1.17222 1.32366 1.86430 1.19923 0.84500 0.89113 0.89892 1.67534 1.08122 1.31522 1.20919 1.23458 0.88241 0.99820 0.88176 1.22402 1.03548 0.91446 1.04364 1.22139 0.89308 1.02372 0.89731 1.19830 0.95668 0.90767 1.16790 1.17961 0.84587 0.81983 0.78708 1.90787 1.30359 1.81630 1.42944 1.49756 1.22662 1.17427 1.45447 1.21676 0.86552 0.98155 0.93621 1.22167 0.99480 0.93444 0.97452 0.89537 1.21676 0.95704 0.91528 1.02920 1.23569 0.96215 0.98408 0.99682 1.20336 0.96461 0.84260 0.90835 0.93461 1.42879 1.62028 1.18877 1.15385 1.19045 1.22408 0.94899 0.99163 0.92357 1.25457 1.01394 0.96474 1.02297 1.69879 1.46234 1.09434 1.38034 0.85456 0.78040 0.78037 0.80512 1.20020 1.22714 1.18300 1.22314 0.98137 0.94399 0.99557 0.90291 1.21377 0.93227 0.83890 1.00801 0.92332 0.87390 0.92745 0.90801 0.91341 0.78016 0.79494 0.81334 0.88615 0.88339 0.90189 0.88726 0.92623 0.91815 0.80286 0.93471 0.92775 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.06 1.27 6.03 71.98 0.43 1.71 16 3 O -0.32 -9.17 8.96 -73.22 -0.66 -9.83 16 4 C 0.34 8.75 7.48 85.13 0.64 9.39 16 5 N -0.56 -10.80 9.21 -308.00 -2.84 -13.64 16 6 C 0.16 1.70 11.17 84.71 0.95 2.65 16 7 C -0.20 -1.60 10.09 22.32 0.23 -1.37 16 8 C -0.01 -0.14 8.57 22.72 0.19 0.05 16 9 C -0.22 -5.39 5.56 -19.91 -0.11 -5.50 16 10 C 0.58 18.05 7.31 86.69 0.63 18.68 16 11 O -0.58 -23.78 16.55 9.99 0.17 -23.61 16 12 N -0.62 -16.33 3.43 -818.84 -2.81 -19.14 16 13 C 0.12 1.98 5.18 85.00 0.44 2.42 16 14 C -0.11 -2.04 2.77 -10.56 -0.03 -2.07 16 15 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 16 C -0.08 -1.45 6.72 31.13 0.21 -1.24 16 17 C -0.14 -3.95 6.74 32.80 0.22 -3.72 16 18 C 0.19 6.70 3.41 45.14 0.15 6.85 16 19 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 20 N -0.75 -34.19 4.91 -322.25 -1.58 -35.78 16 21 C -0.22 -12.68 10.44 84.03 0.88 -11.80 16 22 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 23 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 25 Si 0.95 46.28 27.74 68.60 1.90 48.18 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 28 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 29 C -0.12 -3.52 2.41 -10.61 -0.03 -3.55 16 30 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 31 C 0.13 3.98 6.83 85.07 0.58 4.56 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 37 H 0.20 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 39 H 0.17 1.55 5.60 -2.91 -0.02 1.53 16 40 H 0.10 1.22 7.97 -2.39 -0.02 1.20 16 41 H 0.10 1.12 6.30 -2.39 -0.02 1.10 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.82 7.98 -2.39 -0.02 1.80 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.36 16.19 5.54 -92.70 -0.51 15.67 16 47 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 48 H 0.05 1.97 8.06 -2.39 -0.02 1.96 16 49 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -83.85 393.26 1.47 -82.38 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.39 Total: 23.05 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.59 Total: 11.83 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -6.92 Total: -132.01 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.49 Total: -33.44 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Total: -83.85 1.47 -82.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.117 kcal (2) G-P(sol) polarization free energy of solvation -83.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds