Wall clock time and date at job start Wed Apr 1 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.35639 * 117.00183 * 179.97438 * 3 2 1 5 5 C 1.39349 * 120.54310 * 0.27607 * 4 3 2 6 6 C 1.38305 * 118.43998 * 180.26238 * 5 4 3 7 7 C 1.38763 * 119.44377 * 359.72217 * 6 5 4 8 8 N 1.31373 * 121.07171 * 0.02562 * 7 6 5 9 9 C 1.32865 * 121.69421 * 359.97438 * 8 7 6 10 10 C 1.47823 * 119.78264 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00002 * 184.90228 * 10 9 8 12 12 N 1.34778 * 120.00320 * 4.90292 * 10 9 8 13 13 C 1.48342 * 128.20009 * 174.51755 * 12 10 9 14 14 C 1.54465 * 104.42237 * 138.20203 * 13 12 10 15 15 H 1.08997 * 111.93251 * 263.75331 * 14 13 12 16 16 C 1.54034 * 108.85004 * 138.38512 * 14 13 12 17 17 C 1.54842 * 104.44294 * 224.19482 * 16 14 13 18 18 C 1.54837 * 102.72993 * 38.31049 * 17 16 14 19 19 H 1.09000 * 110.56472 * 80.54795 * 18 17 16 20 20 N 1.46504 * 110.45630 * 203.05385 * 18 17 16 21 21 C 1.36929 * 120.00454 * 269.93304 * 20 18 17 22 22 H 1.08010 * 119.99683 * 359.97438 * 21 20 18 23 23 C 1.38810 * 120.00422 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47065 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46918 * 120.00121 * 25 23 21 28 28 H 1.48505 * 109.47219 * 240.00096 * 25 23 21 29 29 C 1.54139 * 104.34935 * 321.77236 * 18 17 16 30 30 H 1.09004 * 111.89710 * 260.14809 * 29 18 17 31 31 C 1.48333 * 128.19327 * 354.55761 * 12 10 9 32 32 H 1.08999 * 109.46856 * 60.00343 * 1 2 3 33 33 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47020 * 299.99738 * 1 2 3 35 35 H 1.08997 * 109.47020 * 240.00262 * 2 1 3 36 36 H 1.09001 * 109.46816 * 120.00205 * 2 1 3 37 37 H 1.07999 * 120.77735 * 0.02562 * 5 4 3 38 38 H 1.08001 * 120.27362 * 179.75550 * 6 5 4 39 39 H 1.08008 * 119.46406 * 180.02562 * 7 6 5 40 40 H 1.08994 * 110.46673 * 256.97893 * 13 12 10 41 41 H 1.09004 * 110.45876 * 19.43590 * 13 12 10 42 42 H 1.09007 * 110.33981 * 105.48735 * 16 14 13 43 43 H 1.08995 * 110.59487 * 343.03050 * 16 14 13 44 44 H 1.08998 * 110.75485 * 280.00275 * 17 16 14 45 45 H 1.08996 * 110.91417 * 156.69576 * 17 16 14 46 46 H 0.97004 * 119.99601 * 89.92251 * 20 18 17 47 47 H 0.97004 * 120.00161 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.46957 * 340.44307 * 31 12 10 49 49 H 1.09003 * 110.46345 * 103.02910 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2104 0.4280 -0.0047 6 6 5.5739 0.6594 0.0016 7 6 6.0442 1.9649 0.0071 8 7 5.2154 2.9842 0.0068 9 6 3.8979 2.8126 0.0009 10 6 3.0040 3.9900 0.0003 11 8 1.8008 3.8396 0.0848 12 7 3.5231 5.2302 -0.0940 13 6 2.8010 6.5195 -0.2229 14 6 3.5633 7.4827 0.7137 15 1 3.0917 7.5558 1.6937 16 6 3.7038 8.8485 0.0156 17 6 5.1721 9.2658 0.2753 18 6 5.9354 7.9245 0.1491 19 1 6.1071 7.6788 -0.8989 20 7 7.2071 7.9889 0.8736 21 6 8.3394 8.4157 0.2329 22 1 8.2951 8.7046 -0.8070 23 6 9.5442 8.4772 0.9195 24 7 9.5981 8.1257 2.1867 25 14 11.0890 9.0588 0.0451 26 1 10.7638 9.3924 -1.3649 27 1 11.6210 10.2645 0.7295 28 1 12.1104 7.9813 0.0753 29 6 4.9970 6.8884 0.7987 30 1 5.2964 6.6528 1.8200 31 6 4.9519 5.6288 -0.0943 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.8207 -0.5792 -0.0097 38 1 6.2668 -0.1690 0.0018 39 1 7.1090 2.1460 0.0116 40 1 2.8406 6.8774 -1.2517 41 1 1.7663 6.4109 0.1024 42 1 3.0184 9.5721 0.4573 43 1 3.5184 8.7532 -1.0542 44 1 5.2843 9.6813 1.2767 45 1 5.5134 9.9768 -0.4770 46 1 7.2469 7.7292 1.8074 47 1 10.4399 8.1690 2.6667 48 1 5.5686 4.8374 0.3316 49 1 5.2809 5.8669 -1.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026436390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:18 Heat of formation + Delta-G solvation = -7.908769 kcal Electronic energy + Delta-G solvation = -30712.281404 eV Core-core repulsion = 26640.403152 eV Total energy + Delta-G solvation = -4071.878251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11675 -39.80218 -38.50687 -38.00814 -34.98075 -33.38227 -32.54952 -32.36602 -30.90889 -30.24188 -29.02674 -28.32505 -25.28875 -24.97163 -24.39099 -22.92760 -22.75536 -22.35937 -20.27798 -19.69748 -18.85119 -18.38716 -17.45538 -17.06676 -16.79286 -16.53250 -15.88743 -15.48524 -15.17302 -15.04005 -14.61851 -14.34644 -14.21938 -13.79645 -13.61625 -13.50003 -12.96717 -12.95953 -12.88226 -12.81280 -12.68845 -12.40644 -12.11874 -11.69525 -11.61022 -11.52478 -11.22780 -11.09213 -10.76470 -10.74636 -10.61371 -10.28501 -10.20794 -10.11327 -10.07278 -9.95120 -9.83347 -9.62690 -9.26003 -8.81907 -8.72149 -8.37395 -6.88929 -5.72862 -3.00628 0.51141 1.00888 2.78111 2.80821 3.06628 3.45055 3.51130 3.53013 3.75874 4.10235 4.31250 4.40135 4.56024 4.62012 4.65278 4.73835 4.83816 4.86488 4.93010 4.96744 5.09929 5.17253 5.31636 5.47914 5.55213 5.58251 5.60288 5.64523 5.71299 5.73355 5.78163 5.79515 5.95264 6.00730 6.07137 6.10291 6.15332 6.29748 6.34067 6.41904 6.54591 6.62002 6.71746 6.83340 6.90089 6.99489 7.13999 7.59433 7.74870 7.78931 8.33924 8.45940 9.57080 10.16164 10.50471 11.49875 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.002908 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.362990 B = 9625.514161 C =11400.343521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.273 6.273 4 C 0.136 3.864 5 C -0.178 4.178 6 C -0.108 4.108 7 C 0.060 3.940 8 N -0.408 5.408 9 C 0.050 3.950 10 C 0.590 3.410 11 O -0.528 6.528 12 N -0.607 5.607 13 C 0.110 3.890 14 C -0.102 4.102 15 H 0.083 0.917 16 C -0.115 4.115 17 C -0.142 4.142 18 C 0.184 3.816 19 H 0.057 0.943 20 N -0.720 5.720 21 C -0.234 4.234 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 C -0.109 4.109 30 H 0.086 0.914 31 C 0.100 3.900 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.384 0.616 47 H 0.253 0.747 48 H 0.118 0.882 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -16.929 -5.056 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.183 6.183 4 C 0.085 3.915 5 C -0.204 4.204 6 C -0.128 4.128 7 C -0.100 4.100 8 N -0.119 5.119 9 C -0.089 4.089 10 C 0.378 3.622 11 O -0.404 6.404 12 N -0.339 5.339 13 C -0.012 4.012 14 C -0.121 4.121 15 H 0.101 0.899 16 C -0.153 4.153 17 C -0.183 4.183 18 C 0.073 3.927 19 H 0.075 0.925 20 N -0.360 5.360 21 C -0.365 4.365 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 C -0.129 4.129 30 H 0.105 0.895 31 C -0.022 4.022 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.218 0.782 47 H 0.063 0.937 48 H 0.135 0.865 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.657 -16.083 -5.137 23.026 hybrid contribution 0.922 -0.878 -0.085 1.276 sum -14.735 -16.961 -5.222 23.067 Atomic orbital electron populations 1.21735 0.92270 1.02572 1.04104 1.22930 0.96675 0.82140 1.01182 1.86415 1.16935 1.28520 1.86433 1.19965 0.84162 0.93663 0.93717 1.21727 0.94188 0.98573 1.05914 1.22230 0.95202 0.99005 0.96359 1.22913 1.00441 0.87786 0.98892 1.67875 1.01615 1.34444 1.07986 1.20672 0.90422 0.90865 1.06954 1.17161 0.86560 0.81091 0.77407 1.90807 1.13950 1.84974 1.50702 1.48968 1.09909 1.04610 1.70436 1.22651 0.96901 0.82207 0.99414 1.22758 0.95987 0.94820 0.98565 0.89890 1.22350 0.98264 0.95204 0.99521 1.23214 0.93220 1.00317 1.01534 1.21142 0.85607 0.90776 0.95165 0.92528 1.42458 1.03104 1.78747 1.11667 1.19288 0.86784 1.35615 0.94834 0.91195 1.24718 0.97742 1.02550 0.96029 1.69672 1.25437 1.54595 1.08450 0.86162 0.83807 0.77924 0.78588 1.20609 1.22012 1.21978 1.23164 0.94291 0.95246 1.00194 0.89546 1.23165 0.80956 0.98000 1.00109 0.91291 0.90449 0.91221 0.92011 0.91955 0.83818 0.83934 0.81385 0.90899 0.90516 0.92375 0.91794 0.91669 0.92331 0.78218 0.93663 0.86468 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.38 5.48 37.16 0.20 0.58 16 3 O -0.27 -3.58 8.21 -40.52 -0.33 -3.92 16 4 C 0.14 1.76 6.71 -38.55 -0.26 1.50 16 5 C -0.18 -1.66 9.13 -39.14 -0.36 -2.02 16 6 C -0.11 -0.93 10.10 -39.36 -0.40 -1.33 16 7 C 0.06 0.67 11.17 -17.55 -0.20 0.47 16 8 N -0.41 -5.86 6.68 -9.71 -0.06 -5.93 16 9 C 0.05 0.76 6.74 -82.88 -0.56 0.20 16 10 C 0.59 10.16 7.89 -12.34 -0.10 10.06 16 11 O -0.53 -10.11 15.42 -16.59 -0.26 -10.37 16 12 N -0.61 -9.77 3.31 -170.01 -0.56 -10.34 16 13 C 0.11 1.58 6.59 -2.26 -0.01 1.56 16 14 C -0.10 -1.47 3.98 -88.02 -0.35 -1.82 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.11 -1.59 6.35 -25.22 -0.16 -1.75 16 17 C -0.14 -2.47 6.57 -24.79 -0.16 -2.64 16 18 C 0.18 3.56 3.06 -66.36 -0.20 3.35 16 19 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 20 N -0.72 -17.57 5.20 -51.91 -0.27 -17.84 16 21 C -0.23 -6.35 9.96 -15.06 -0.15 -6.50 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 25 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 C -0.11 -1.84 3.66 -87.96 -0.32 -2.16 16 30 H 0.09 1.59 7.79 -51.93 -0.40 1.18 16 31 C 0.10 1.63 6.03 -2.26 -0.01 1.61 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 36 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 37 H 0.14 0.89 6.46 -52.49 -0.34 0.55 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.07 0.96 7.20 -51.93 -0.37 0.59 16 41 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 42 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 43 H 0.06 0.82 7.19 -51.93 -0.37 0.44 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.38 10.05 7.60 -40.82 -0.31 9.74 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.12 2.01 5.26 -51.93 -0.27 1.73 16 49 H 0.07 1.13 7.20 -51.93 -0.37 0.76 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -33.52 390.26 -10.03 -43.55 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.38 Total: 9.00 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.75 Total: -0.07 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.17 Total: -61.24 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.59 Total: -14.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.52 -10.03 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.639 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds