Wall clock time and date at job start Wed Apr 1 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.35639 * 117.00183 * 179.97438 * 3 2 1 5 5 C 1.39349 * 120.54310 * 0.27607 * 4 3 2 6 6 C 1.38305 * 118.43998 * 180.26238 * 5 4 3 7 7 C 1.38763 * 119.44377 * 359.72217 * 6 5 4 8 8 N 1.31373 * 121.07171 * 0.02562 * 7 6 5 9 9 C 1.32865 * 121.69421 * 359.97438 * 8 7 6 10 10 C 1.47823 * 119.78264 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00002 * 184.90228 * 10 9 8 12 12 N 1.34778 * 120.00320 * 4.90292 * 10 9 8 13 13 C 1.48342 * 128.20009 * 174.51755 * 12 10 9 14 14 C 1.54465 * 104.42237 * 138.20203 * 13 12 10 15 15 H 1.08997 * 111.93251 * 263.75331 * 14 13 12 16 16 C 1.54034 * 108.85004 * 138.38512 * 14 13 12 17 17 C 1.54842 * 104.44294 * 224.19482 * 16 14 13 18 18 C 1.54837 * 102.72993 * 38.31049 * 17 16 14 19 19 H 1.09000 * 110.56472 * 80.54795 * 18 17 16 20 20 N 1.46504 * 110.45630 * 203.05385 * 18 17 16 21 21 C 1.36929 * 120.00454 * 269.93304 * 20 18 17 22 22 H 1.08010 * 119.99683 * 359.97438 * 21 20 18 23 23 C 1.38810 * 120.00422 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47065 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46918 * 120.00121 * 25 23 21 28 28 H 1.48505 * 109.47219 * 240.00096 * 25 23 21 29 29 C 1.54139 * 104.34935 * 321.77236 * 18 17 16 30 30 H 1.09004 * 111.89710 * 260.14809 * 29 18 17 31 31 C 1.48333 * 128.19327 * 354.55761 * 12 10 9 32 32 H 1.08999 * 109.46856 * 60.00343 * 1 2 3 33 33 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47020 * 299.99738 * 1 2 3 35 35 H 1.08997 * 109.47020 * 240.00262 * 2 1 3 36 36 H 1.09001 * 109.46816 * 120.00205 * 2 1 3 37 37 H 1.07999 * 120.77735 * 0.02562 * 5 4 3 38 38 H 1.08001 * 120.27362 * 179.75550 * 6 5 4 39 39 H 1.08008 * 119.46406 * 180.02562 * 7 6 5 40 40 H 1.08994 * 110.46673 * 256.97893 * 13 12 10 41 41 H 1.09004 * 110.45876 * 19.43590 * 13 12 10 42 42 H 1.09007 * 110.33981 * 105.48735 * 16 14 13 43 43 H 1.08995 * 110.59487 * 343.03050 * 16 14 13 44 44 H 1.08998 * 110.75485 * 280.00275 * 17 16 14 45 45 H 1.08996 * 110.91417 * 156.69576 * 17 16 14 46 46 H 0.97004 * 119.99601 * 89.92251 * 20 18 17 47 47 H 0.97004 * 120.00161 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.46957 * 340.44307 * 31 12 10 49 49 H 1.09003 * 110.46345 * 103.02910 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.2104 0.4280 -0.0047 6 6 5.5739 0.6594 0.0016 7 6 6.0442 1.9649 0.0071 8 7 5.2154 2.9842 0.0068 9 6 3.8979 2.8126 0.0009 10 6 3.0040 3.9900 0.0003 11 8 1.8008 3.8396 0.0848 12 7 3.5231 5.2302 -0.0940 13 6 2.8010 6.5195 -0.2229 14 6 3.5633 7.4827 0.7137 15 1 3.0917 7.5558 1.6937 16 6 3.7038 8.8485 0.0156 17 6 5.1721 9.2658 0.2753 18 6 5.9354 7.9245 0.1491 19 1 6.1071 7.6788 -0.8989 20 7 7.2071 7.9889 0.8736 21 6 8.3394 8.4157 0.2329 22 1 8.2951 8.7046 -0.8070 23 6 9.5442 8.4772 0.9195 24 7 9.5981 8.1257 2.1867 25 14 11.0890 9.0588 0.0451 26 1 10.7638 9.3924 -1.3649 27 1 11.6210 10.2645 0.7295 28 1 12.1104 7.9813 0.0753 29 6 4.9970 6.8884 0.7987 30 1 5.2964 6.6528 1.8200 31 6 4.9519 5.6288 -0.0943 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.8207 -0.5792 -0.0097 38 1 6.2668 -0.1690 0.0018 39 1 7.1090 2.1460 0.0116 40 1 2.8406 6.8774 -1.2517 41 1 1.7663 6.4109 0.1024 42 1 3.0184 9.5721 0.4573 43 1 3.5184 8.7532 -1.0542 44 1 5.2843 9.6813 1.2767 45 1 5.5134 9.9768 -0.4770 46 1 7.2469 7.7292 1.8074 47 1 10.4399 8.1690 2.6667 48 1 5.5686 4.8374 0.3316 49 1 5.2809 5.8669 -1.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026436390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:17 Heat of formation + Delta-G solvation = -27.957840 kcal Electronic energy + Delta-G solvation = -30713.150797 eV Core-core repulsion = 26640.403152 eV Total energy + Delta-G solvation = -4072.747644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.07070 -41.02148 -39.43707 -39.23833 -36.56769 -35.00874 -33.50224 -33.05543 -32.63301 -31.13237 -30.46340 -29.72210 -26.65818 -26.22446 -25.33082 -24.50061 -23.97883 -23.11133 -21.62798 -20.86263 -20.29192 -19.24052 -18.97172 -18.53735 -17.78116 -17.36008 -17.21753 -16.74143 -16.47619 -16.14394 -15.82002 -15.63274 -15.40147 -15.03197 -14.91357 -14.64251 -14.52162 -14.15263 -13.77083 -13.70682 -13.58641 -13.48075 -13.29826 -13.17598 -12.95399 -12.86574 -12.57375 -12.36309 -12.25007 -12.01669 -11.93333 -11.85381 -11.63511 -11.55283 -11.46176 -11.36475 -11.19054 -10.86154 -10.86016 -10.28422 -9.82438 -9.45251 -8.90661 -7.87787 -5.14975 -0.38488 0.19403 1.50652 1.50932 1.60808 1.69994 1.87273 2.07964 2.61087 2.78716 3.08512 3.42767 3.48645 3.56247 3.68135 3.71648 3.81412 3.96584 4.01883 4.05435 4.13450 4.16794 4.28843 4.32611 4.38732 4.44009 4.54379 4.56410 4.65891 4.68544 4.77335 4.79064 4.85631 4.89278 4.90245 4.97578 5.02627 5.08381 5.19043 5.21266 5.25514 5.29564 5.43205 5.49856 5.55103 5.57376 5.65681 6.21935 6.34505 6.49499 6.70825 7.12218 7.40320 8.17480 8.40515 9.36105 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.002908 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.362990 B = 9625.514161 C =11400.343521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.035 3.965 3 O -0.304 6.304 4 C 0.128 3.872 5 C -0.169 4.169 6 C -0.085 4.085 7 C 0.046 3.954 8 N -0.437 5.437 9 C 0.005 3.995 10 C 0.583 3.417 11 O -0.559 6.559 12 N -0.610 5.610 13 C 0.110 3.890 14 C -0.093 4.093 15 H 0.087 0.913 16 C -0.100 4.100 17 C -0.137 4.137 18 C 0.179 3.821 19 H 0.055 0.945 20 N -0.732 5.732 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.295 1.295 29 C -0.104 4.104 30 H 0.066 0.934 31 C 0.110 3.890 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.184 0.816 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.108 0.892 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -18.772 -6.441 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 O -0.216 6.216 4 C 0.077 3.923 5 C -0.195 4.195 6 C -0.104 4.104 7 C -0.116 4.116 8 N -0.149 5.149 9 C -0.131 4.131 10 C 0.372 3.628 11 O -0.438 6.438 12 N -0.342 5.342 13 C -0.011 4.011 14 C -0.112 4.112 15 H 0.106 0.894 16 C -0.138 4.138 17 C -0.178 4.178 18 C 0.070 3.930 19 H 0.073 0.927 20 N -0.370 5.370 21 C -0.361 4.361 22 H 0.093 0.907 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.191 1.191 27 H -0.225 1.225 28 H -0.222 1.222 29 C -0.124 4.124 30 H 0.085 0.915 31 C -0.012 4.012 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.199 0.801 38 H 0.205 0.795 39 H 0.201 0.799 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.126 0.874 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.018 -17.909 -6.565 24.908 hybrid contribution 0.983 -0.436 0.333 1.126 sum -15.035 -18.344 -6.232 24.524 Atomic orbital electron populations 1.21784 0.91962 1.04141 1.02694 1.23292 0.97029 0.80461 1.03096 1.86382 1.17258 1.31537 1.86389 1.20145 0.84757 0.93905 0.93492 1.22162 0.93980 0.99124 1.04200 1.22687 0.95673 0.99058 0.92990 1.23374 1.00854 0.88595 0.98744 1.67712 1.01689 1.36360 1.09115 1.20456 0.90718 0.91113 1.10854 1.17638 0.86679 0.81870 0.76633 1.90761 1.15176 1.85531 1.52346 1.49026 1.09766 1.05088 1.70279 1.22755 0.96712 0.81479 1.00187 1.22716 0.94119 0.95233 0.99150 0.89440 1.22285 0.95922 0.94819 1.00819 1.23052 0.95479 0.98703 1.00534 1.21352 0.84306 0.92722 0.94602 0.92684 1.42637 1.04385 1.78727 1.11293 1.19643 0.87631 1.33845 0.95005 0.90659 1.25482 1.00744 1.03893 0.96802 1.69828 1.25719 1.56705 1.09959 0.85148 0.80081 0.76891 0.78129 1.19062 1.22508 1.22195 1.23000 0.95332 0.95155 0.98918 0.91544 1.22974 0.81280 0.97317 0.99638 0.92580 0.87317 0.92752 0.89820 0.90037 0.80055 0.79479 0.79939 0.89297 0.90403 0.90099 0.89914 0.93372 0.92461 0.79701 0.94264 0.87370 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.51 5.48 71.98 0.39 0.91 16 3 O -0.30 -7.94 8.21 -68.59 -0.56 -8.50 16 4 C 0.13 3.25 6.71 22.94 0.15 3.40 16 5 C -0.17 -2.65 9.13 22.55 0.21 -2.45 16 6 C -0.08 -1.18 10.10 22.41 0.23 -0.95 16 7 C 0.05 0.97 11.17 84.89 0.95 1.91 16 8 N -0.44 -12.75 6.68 -184.63 -1.23 -13.99 16 9 C 0.00 0.16 6.74 41.93 0.28 0.44 16 10 C 0.58 20.80 7.89 86.78 0.68 21.49 16 11 O -0.56 -22.28 15.42 17.05 0.26 -22.02 16 12 N -0.61 -20.07 3.31 -810.06 -2.68 -22.75 16 13 C 0.11 3.09 6.59 86.52 0.57 3.66 16 14 C -0.09 -2.61 3.98 -9.11 -0.04 -2.65 16 15 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.10 -2.57 6.35 31.57 0.20 -2.37 16 17 C -0.14 -4.69 6.57 31.85 0.21 -4.48 16 18 C 0.18 6.98 3.06 46.00 0.14 7.12 16 19 H 0.06 2.17 7.12 -2.39 -0.02 2.15 16 20 N -0.73 -36.56 5.20 -318.15 -1.65 -38.22 16 21 C -0.23 -12.55 9.96 84.03 0.84 -11.71 16 22 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 24 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 25 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 29 C -0.10 -3.57 3.66 -9.07 -0.03 -3.61 16 30 H 0.07 2.56 7.79 -2.39 -0.02 2.54 16 31 C 0.11 3.69 6.03 86.52 0.52 4.21 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.82 7.69 -2.39 -0.02 0.80 16 36 H 0.08 0.84 7.71 -2.39 -0.02 0.82 16 37 H 0.18 1.39 6.46 -2.91 -0.02 1.37 16 38 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.18 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.09 2.20 7.20 -2.39 -0.02 2.18 16 41 H 0.08 2.18 7.85 -2.39 -0.02 2.16 16 42 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.08 1.86 7.19 -2.39 -0.02 1.85 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.37 20.22 7.60 -92.71 -0.70 19.51 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.11 3.88 5.26 -2.39 -0.01 3.87 16 49 H 0.07 2.27 7.20 -2.39 -0.02 2.25 16 Total: -1.00 -76.31 390.26 3.22 -73.09 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.27 Total: 33.71 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.51 Total: 9.75 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -5.29 Total: -134.07 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.30 Total: -30.52 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.31 3.22 -73.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.132 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds