Wall clock time and date at job start Wed Apr 1 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47249 * 2 1 4 4 C 1.35643 * 117.00416 * 180.02562 * 3 2 1 5 5 C 1.39352 * 120.53983 * 0.02582 * 4 3 2 6 6 C 1.38299 * 118.44241 * 179.97438 * 5 4 3 7 7 C 1.38764 * 119.44333 * 359.97438 * 6 5 4 8 8 N 1.31375 * 121.06867 * 359.72717 * 7 6 5 9 9 C 1.32864 * 121.69781 * 0.56095 * 8 7 6 10 10 C 1.47827 * 119.78626 * 179.71138 * 9 8 7 11 11 O 1.21554 * 119.99743 * 179.73073 * 10 9 8 12 12 N 1.34771 * 120.00004 * 359.73019 * 10 9 8 13 13 C 1.49214 * 126.05832 * 0.02562 * 12 10 9 14 14 C 1.50352 * 104.85922 * 172.93323 * 13 12 10 15 15 H 1.09001 * 110.04671 * 278.95672 * 14 13 12 16 16 C 1.50991 * 125.57383 * 144.33414 * 14 13 12 17 17 C 1.56399 * 101.59815 * 203.97654 * 16 14 13 18 18 C 1.54944 * 105.61608 * 24.46582 * 17 16 14 19 19 H 1.08996 * 109.34039 * 126.79265 * 18 17 16 20 20 N 1.46500 * 111.17291 * 249.12391 * 18 17 16 21 21 C 1.36933 * 120.00304 * 270.74135 * 20 18 17 22 22 H 1.08006 * 119.99966 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00400 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00572 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99726 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47175 * 90.00266 * 25 23 21 27 27 H 1.48498 * 109.47231 * 210.00132 * 25 23 21 28 28 H 1.48499 * 109.47115 * 330.00032 * 25 23 21 29 29 C 1.50297 * 104.64655 * 8.41797 * 18 17 16 30 30 H 1.09002 * 109.99891 * 79.41323 * 29 18 17 31 31 C 1.49698 * 126.05662 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47048 * 300.00484 * 1 2 3 34 34 H 1.09004 * 109.46983 * 59.99621 * 1 2 3 35 35 H 1.09001 * 109.46960 * 240.00463 * 2 1 3 36 36 H 1.08994 * 109.47454 * 120.00156 * 2 1 3 37 37 H 1.08001 * 120.77641 * 359.95393 * 5 4 3 38 38 H 1.07998 * 120.27940 * 179.97438 * 6 5 4 39 39 H 1.07999 * 119.46878 * 179.97438 * 7 6 5 40 40 H 1.08996 * 110.35983 * 291.77327 * 13 12 10 41 41 H 1.08991 * 110.36389 * 53.97724 * 13 12 10 42 42 H 1.08998 * 110.99959 * 322.05267 * 16 14 13 43 43 H 1.09001 * 111.00066 * 85.85657 * 16 14 13 44 44 H 1.08996 * 110.19173 * 144.09549 * 17 16 14 45 45 H 1.09004 * 110.18497 * 265.86335 * 17 16 14 46 46 H 0.97007 * 119.99963 * 90.73384 * 20 18 17 47 47 H 0.97000 * 120.00781 * 180.02562 * 24 23 21 48 48 H 1.08994 * 110.84799 * 36.67241 * 31 12 10 49 49 H 1.08999 * 111.01881 * 273.13216 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2104 0.4280 -0.0016 6 6 5.5739 0.6594 -0.0027 7 6 6.0443 1.9649 -0.0032 8 7 5.2154 2.9841 -0.0080 9 6 3.8979 2.8126 -0.0016 10 6 3.0041 3.9901 -0.0010 11 8 1.7981 3.8376 0.0000 12 7 3.5262 5.2325 -0.0015 13 6 4.9786 5.5748 -0.0031 14 6 5.0228 7.0670 -0.1818 15 1 4.9019 7.3210 -1.2349 16 6 6.0262 7.9985 0.4547 17 6 5.2441 9.3529 0.4516 18 6 3.7435 8.9678 0.4234 19 1 3.2269 9.4686 1.2421 20 7 3.1316 9.3174 -0.8610 21 6 2.5765 10.5562 -1.0404 22 1 2.5894 11.2756 -0.2349 23 6 1.9972 10.8876 -2.2575 24 7 1.4632 12.0782 -2.4299 25 14 1.9755 9.6438 -3.6510 26 1 0.7378 8.8273 -3.5666 27 1 2.0095 10.3579 -4.9526 28 1 3.1617 8.7572 -3.5417 29 6 3.7294 7.4785 0.6250 30 1 3.8604 7.2441 1.6814 31 6 2.7519 6.5137 -0.0004 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.8207 -0.5792 -0.0013 38 1 6.2668 -0.1690 -0.0031 39 1 7.1089 2.1460 -0.0036 40 1 5.4358 5.2928 0.9452 41 1 5.4846 5.0770 -0.8302 42 1 6.2599 7.6848 1.4721 43 1 6.9317 8.0682 -0.1481 44 1 5.4788 9.9250 1.3492 45 1 5.4952 9.9302 -0.4382 46 1 3.1197 8.6712 -1.5844 47 1 1.0580 12.3097 -3.2802 48 1 1.8528 6.4230 0.6090 49 1 2.5009 6.8196 -1.0160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026436392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:28 Heat of formation + Delta-G solvation = 10.296189 kcal Electronic energy + Delta-G solvation = -30916.081709 eV Core-core repulsion = 26844.992883 eV Total energy + Delta-G solvation = -4071.088825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.23860 -40.26955 -38.64349 -38.20707 -35.23260 -33.34277 -32.73170 -32.41797 -31.05428 -30.45061 -29.25379 -28.66641 -25.73064 -25.23967 -24.29065 -22.99706 -22.65118 -22.36538 -19.97648 -19.91173 -18.93239 -18.48827 -17.84435 -17.35961 -17.06003 -16.59110 -15.86964 -15.56173 -15.28507 -14.92803 -14.57739 -14.45601 -14.33389 -13.94505 -13.76487 -13.63521 -13.48077 -13.01061 -12.88247 -12.81159 -12.58042 -12.52525 -12.27188 -11.91001 -11.81011 -11.68040 -11.30805 -11.27210 -10.99883 -10.84923 -10.61162 -10.37731 -10.28727 -10.26435 -10.18240 -10.05533 -9.57172 -9.54988 -9.49071 -8.89727 -8.81284 -8.38377 -7.23819 -5.73749 -3.08998 0.39315 0.87750 2.71242 2.74939 2.94742 3.40853 3.44400 3.49539 3.66300 3.93236 4.17120 4.23495 4.33811 4.52892 4.55398 4.62531 4.67159 4.77806 4.83127 4.99599 5.05198 5.19850 5.28289 5.31822 5.47700 5.47900 5.53418 5.57010 5.57550 5.60869 5.71466 5.75491 5.78975 5.87155 5.95339 6.04444 6.06756 6.15266 6.25059 6.32954 6.38364 6.47317 6.49283 6.63269 6.79648 6.89894 7.01536 7.44651 7.66862 8.03407 8.29958 8.45751 9.23898 9.96684 10.16205 11.44704 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.003070 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.329413 B = 9116.920613 C =10401.447234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.270 6.270 4 C 0.140 3.860 5 C -0.178 4.178 6 C -0.109 4.109 7 C 0.053 3.947 8 N -0.413 5.413 9 C 0.050 3.950 10 C 0.581 3.419 11 O -0.520 6.520 12 N -0.609 5.609 13 C 0.141 3.859 14 C -0.134 4.134 15 H 0.082 0.918 16 C -0.095 4.095 17 C -0.145 4.145 18 C 0.200 3.800 19 H 0.062 0.938 20 N -0.742 5.742 21 C -0.241 4.241 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.878 3.122 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.278 1.278 29 C -0.125 4.125 30 H 0.081 0.919 31 C 0.132 3.868 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.081 0.919 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -28.000 7.433 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.180 6.180 4 C 0.088 3.912 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.107 4.107 8 N -0.124 5.124 9 C -0.089 4.089 10 C 0.368 3.632 11 O -0.395 6.395 12 N -0.343 5.343 13 C 0.020 3.980 14 C -0.154 4.154 15 H 0.100 0.900 16 C -0.133 4.133 17 C -0.185 4.185 18 C 0.090 3.910 19 H 0.080 0.920 20 N -0.385 5.385 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.708 3.292 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.145 4.145 30 H 0.099 0.901 31 C 0.011 3.989 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.182 0.818 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.502 -26.914 7.443 29.496 hybrid contribution -0.064 -2.030 -1.196 2.356 sum 9.438 -28.943 6.248 31.077 Atomic orbital electron populations 1.21744 0.92117 1.02627 1.04306 1.22950 0.96842 0.81970 1.01122 1.86449 1.16796 1.28668 1.86133 1.20010 0.84325 0.93667 0.93154 1.21740 0.94182 0.98662 1.05900 1.22198 0.95218 0.98957 0.96528 1.22764 1.00059 0.87886 1.00022 1.67925 1.01734 1.34848 1.07918 1.20696 0.90349 0.91029 1.06784 1.17225 0.86760 0.81253 0.77962 1.90846 1.13563 1.84863 1.50237 1.49642 1.08367 1.04768 1.71540 1.21251 0.80538 0.93826 1.02412 1.22377 0.97921 0.93747 1.01312 0.90001 1.21704 0.96821 0.95171 0.99580 1.23650 0.96968 0.95809 1.02110 1.19877 0.91872 0.89559 0.89721 0.91974 1.42798 1.69593 1.15335 1.10795 1.19089 1.29012 0.89989 0.99017 0.89065 1.24638 1.00558 0.96318 0.97428 1.69690 1.43877 1.19683 1.24941 0.86655 0.77946 0.81405 0.83165 1.20924 1.21739 1.20426 1.22505 0.95570 0.96788 0.99592 0.90085 1.21427 0.94529 0.81140 1.01811 0.90395 0.91152 0.91137 0.91971 0.91968 0.83775 0.84058 0.81791 0.91214 0.90348 0.91879 0.92021 0.92341 0.90537 0.80571 0.93091 0.90061 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.38 5.48 37.16 0.20 0.58 16 3 O -0.27 -3.54 8.20 -40.58 -0.33 -3.87 16 4 C 0.14 1.71 6.71 -38.55 -0.26 1.45 16 5 C -0.18 -1.46 9.13 -39.14 -0.36 -1.82 16 6 C -0.11 -0.73 10.10 -39.36 -0.40 -1.13 16 7 C 0.05 0.44 11.17 -17.55 -0.20 0.25 16 8 N -0.41 -4.91 6.94 -9.71 -0.07 -4.98 16 9 C 0.05 0.72 6.74 -82.88 -0.56 0.16 16 10 C 0.58 10.05 7.86 -12.34 -0.10 9.95 16 11 O -0.52 -10.48 15.47 -16.63 -0.26 -10.73 16 12 N -0.61 -9.94 3.43 -172.68 -0.59 -10.53 16 13 C 0.14 1.94 5.26 -3.86 -0.02 1.92 16 14 C -0.13 -1.96 2.72 -90.27 -0.25 -2.21 16 15 H 0.08 1.37 7.60 -51.93 -0.39 0.98 16 16 C -0.09 -1.25 6.72 -25.91 -0.17 -1.42 16 17 C -0.14 -2.35 6.74 -23.88 -0.16 -2.51 16 18 C 0.20 3.74 3.34 -68.25 -0.23 3.51 16 19 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 20 N -0.74 -17.22 4.62 -53.74 -0.25 -17.46 16 21 C -0.24 -6.72 10.44 -15.06 -0.16 -6.88 16 22 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 25 Si 0.88 22.55 27.73 -169.99 -4.71 17.84 16 26 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 29 C -0.12 -2.00 2.65 -90.33 -0.24 -2.24 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 C 0.13 2.31 6.52 -3.31 -0.02 2.29 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 36 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 37 H 0.14 0.76 6.46 -52.49 -0.34 0.43 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.07 0.89 7.92 -51.93 -0.41 0.47 16 41 H 0.08 1.05 7.12 -51.93 -0.37 0.68 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 46 H 0.36 8.40 4.00 -40.82 -0.16 8.24 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 48 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 49 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -35.04 387.50 -9.71 -44.75 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.49 Total: 6.66 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.62 Total: 1.22 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.13 Total: -61.69 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.59 Total: -14.61 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.04 -9.71 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.043 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds